RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 INPP4AQ96PE3 977 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-215ENST00000554656 LY9Q9HBG7 655 aa12.22□□□□□ -0.45
SHMT2-215ENST00000554656 RBM8AQ9Y5S9 174 aaKnown RBP12.22□□□□□ -0.45
SHMT2-215ENST00000554656 KAT6AQ92794 2004 aa12.21□□□□□ -0.45
SHMT2-215ENST00000554656 REC8O95072 547 aa12.21□□□□□ -0.45
SHMT2-215ENST00000554656 LGALS2P05162 132 aa12.21□□□□□ -0.45
SHMT2-215ENST00000554656 TGFB3P10600 412 aa12.21□□□□□ -0.45
SHMT2-215ENST00000554656 BMP1P13497 986 aa12.21□□□□□ -0.45
SHMT2-215ENST00000554656 KCNJ6P48051 423 aa12.21□□□□□ -0.45
SHMT2-215ENST00000554656 KCNV1Q6PIU1 500 aa12.21□□□□□ -0.45
SHMT2-215ENST00000554656 RALYLQ86SE5 291 aaKnown RBP12.21□□□□□ -0.45
SHMT2-215ENST00000554656 TRIM50Q86XT4 487 aa12.21□□□□□ -0.45
SHMT2-215ENST00000554656 ZNF654Q8IZM8 581 aa12.21□□□□□ -0.45
SHMT2-215ENST00000554656 GDPD5Q8WTR4 605 aa12.21□□□□□ -0.45
SHMT2-215ENST00000554656 UHRF1Q96T88 793 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-215ENST00000554656 SPZ1Q9BXG8 430 aa12.21□□□□□ -0.45
SHMT2-215ENST00000554656 ABHD14A-ACY1A0A1B0GW23 586 aa12.2□□□□□ -0.46
SHMT2-215ENST00000554656 ERICH2A1L162 156 aa12.2□□□□□ -0.46
SHMT2-215ENST00000554656 GJB5O95377 273 aa12.2□□□□□ -0.46
SHMT2-215ENST00000554656 PLEKHA8P1O95397 391 aa12.2□□□□□ -0.46
SHMT2-215ENST00000554656 PARNO95453 639 aaKnown RBP12.2□□□□□ -0.46
SHMT2-215ENST00000554656 SMIM10L2AP0DMW4 78 aa12.2□□□□□ -0.46
SHMT2-215ENST00000554656 SMIM10L2BP0DMW5 78 aa12.2□□□□□ -0.46
SHMT2-215ENST00000554656 ICAM3P32942 547 aa12.2□□□□□ -0.46
SHMT2-215ENST00000554656 RBM25P49756 843 aaKnown RBP12.2□□□□□ -0.46
SHMT2-215ENST00000554656 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.2□□□□□ -0.464e-7■□□□□ 9.3
SHMT2-215ENST00000554656 CATIPQ7Z7H3 387 aa12.2□□□□□ -0.46
SHMT2-215ENST00000554656 C22orf23Q9BZE7 217 aa12.2□□□□□ -0.46
SHMT2-215ENST00000554656 LINC01553A4QN01 128 aa12.19□□□□□ -0.46
SHMT2-215ENST00000554656 SPATA31C2B4DYI2 1134 aa12.19□□□□□ -0.46
SHMT2-215ENST00000554656 KIF28PB7ZC32 967 aa12.19□□□□□ -0.46
SHMT2-215ENST00000554656 H3BRB1 525 aa12.19□□□□□ -0.46
SHMT2-215ENST00000554656 MEIS2O14770 477 aa12.19□□□□□ -0.46
SHMT2-215ENST00000554656 TREHO43280 583 aa12.19□□□□□ -0.46
SHMT2-215ENST00000554656 GTPBP6O43824 516 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-215ENST00000554656 LGR5O75473 907 aa12.19□□□□□ -0.46
SHMT2-215ENST00000554656 THPOP40225 353 aa12.19□□□□□ -0.46
SHMT2-215ENST00000554656 SART3Q15020 963 aaKnown RBP12.19□□□□□ -0.46
SHMT2-215ENST00000554656 SKIV2LQ15477 1246 aaKnown RBP12.19□□□□□ -0.46
SHMT2-215ENST00000554656 FAM117BQ6P1L5 589 aa12.19□□□□□ -0.46
SHMT2-215ENST00000554656 USP17L6PQ6QN14 398 aa12.19□□□□□ -0.46
SHMT2-215ENST00000554656 METTL7BQ6UX53 244 aa12.19□□□□□ -0.46
SHMT2-215ENST00000554656 CYFIP1Q7L576 1253 aa12.19□□□□□ -0.46
SHMT2-215ENST00000554656 SRBD1Q8N5C6 995 aaKnown RBP12.19□□□□□ -0.46
SHMT2-215ENST00000554656 DBF4BQ8NFT6 615 aa12.19□□□□□ -0.46
SHMT2-215ENST00000554656 MAP3K14Q99558 947 aa12.19□□□□□ -0.46
SHMT2-215ENST00000554656 GPR20Q99678 358 aa12.19□□□□□ -0.46
SHMT2-215ENST00000554656 LSG1Q9H089 658 aaKnown RBP12.19□□□□□ -0.46
SHMT2-215ENST00000554656 TUT1Q9H6E5 874 aaKnown RBP12.19□□□□□ -0.46
SHMT2-215ENST00000554656 MLXIPQ9HAP2 919 aa12.19□□□□□ -0.46
SHMT2-215ENST00000554656 RTEL1Q9NZ71 1219 aa12.19□□□□□ -0.46
SHMT2-215ENST00000554656 COL4A6Q14031 1691 aa12.19□□□□□ -0.46
SHMT2-215ENST00000554656 RALGAPA2Q2PPJ7 1873 aa12.19□□□□□ -0.46
SHMT2-215ENST00000554656 LOXHD1Q8IVV2 1947 aa12.18□□□□□ -0.46
SHMT2-215ENST00000554656 C17orf102A2RUQ5 167 aa12.18□□□□□ -0.46
SHMT2-215ENST00000554656 SH2B2O14492 632 aaPredicted RBP12.18□□□□□ -0.46
SHMT2-215ENST00000554656 PRC1O43663 620 aa12.18□□□□□ -0.46
SHMT2-215ENST00000554656 DDAH1O94760 285 aa12.18□□□□□ -0.46
SHMT2-215ENST00000554656 RXRAP19793 462 aa12.18□□□□□ -0.46
SHMT2-215ENST00000554656 ERVK-21P61565 698 aa12.18□□□□□ -0.46
SHMT2-215ENST00000554656 ADAM17P78536 824 aa12.18□□□□□ -0.46
SHMT2-215ENST00000554656 TRAF1Q13077 416 aa12.18□□□□□ -0.46
SHMT2-215ENST00000554656 PLEKHG4Q58EX7 1191 aa12.18□□□□□ -0.46
SHMT2-215ENST00000554656 RAB11FIP4Q86YS3 637 aa12.18□□□□□ -0.46
SHMT2-215ENST00000554656 CMTR1Q8N1G2 835 aaKnown RBP12.18□□□□□ -0.46
SHMT2-215ENST00000554656 IL27Q8NEV9 243 aa12.18□□□□□ -0.46
SHMT2-215ENST00000554656 ATP6V0A1Q93050 837 aa12.18□□□□□ -0.46
SHMT2-215ENST00000554656 RAD9AQ99638 391 aa12.18□□□□□ -0.46
SHMT2-215ENST00000554656 ESYT1Q9BSJ8 1104 aa12.18□□□□□ -0.46
SHMT2-215ENST00000554656 ZBED2Q9BTP6 218 aa12.18□□□□□ -0.46
SHMT2-215ENST00000554656 RNPEPQ9H4A4 650 aa12.18□□□□□ -0.46
SHMT2-215ENST00000554656 SUGCTQ9HAC7 445 aa12.18□□□□□ -0.46
SHMT2-215ENST00000554656 RAPGEFL1Q9UHV5 662 aa12.18□□□□□ -0.46
SHMT2-215ENST00000554656 MTUS1Q9ULD2 1270 aa12.18□□□□□ -0.46
SHMT2-215ENST00000554656 hCG_1642624A0A1W2PR95 340 aa12.17□□□□□ -0.46
SHMT2-215ENST00000554656 RSPH10B2B2RC85 870 aa12.17□□□□□ -0.46
SHMT2-215ENST00000554656 PIK3CDO00329 1044 aa12.17□□□□□ -0.46
SHMT2-215ENST00000554656 FIBPO43427 364 aa12.17□□□□□ -0.46
SHMT2-215ENST00000554656 EFCAB14O75071 495 aa12.17□□□□□ -0.46
SHMT2-215ENST00000554656 STAM2O75886 525 aa12.17□□□□□ -0.46
SHMT2-215ENST00000554656 CTSHP09668 335 aa12.17□□□□□ -0.46
SHMT2-215ENST00000554656 RSPH10BP0C881 870 aa12.17□□□□□ -0.46
SHMT2-215ENST00000554656 IKBKEQ14164 716 aa12.17□□□□□ -0.46
SHMT2-215ENST00000554656 GNPTABQ3T906 1256 aa12.17□□□□□ -0.46
SHMT2-215ENST00000554656 PCNX4Q63HM2 1172 aa12.17□□□□□ -0.46
SHMT2-215ENST00000554656 LMBR1Q8WVP7 490 aa12.17□□□□□ -0.46
SHMT2-215ENST00000554656 RRP36Q96EU6 259 aaKnown RBP12.17□□□□□ -0.46
SHMT2-215ENST00000554656 TSPYL2Q9H2G4 693 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-215ENST00000554656 SETD4Q9NVD3 440 aa12.17□□□□□ -0.46
SHMT2-215ENST00000554656 MYO7AQ13402 2215 aa12.17□□□□□ -0.46
SHMT2-215ENST00000554656 EMSYQ7Z589 1322 aa12.16□□□□□ -0.46
SHMT2-215ENST00000554656 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-215ENST00000554656 NOP56O00567 594 aaKnown RBP12.16□□□□□ -0.46
SHMT2-215ENST00000554656 SLC27A2O14975 620 aa12.16□□□□□ -0.46
SHMT2-215ENST00000554656 ATP9AO75110 1047 aa12.16□□□□□ -0.46
SHMT2-215ENST00000554656 KCNA2P16389 499 aa12.16□□□□□ -0.46
SHMT2-215ENST00000554656 HTRA4P83105 476 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-215ENST00000554656 SP4Q02446 784 aa12.16□□□□□ -0.46
SHMT2-215ENST00000554656 NEDD9Q14511 834 aa12.16□□□□□ -0.46
SHMT2-215ENST00000554656 UBE2SQ16763 222 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms