RNA–Protein interactions for RNA: ENST00000553491.5

ATXN3-220, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 857 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-220ENST00000553491 APAF1O14727 1248 aa6.05□□□□□ -1.44
ATXN3-220ENST00000553491 KCNQ3O43525 872 aa6.05□□□□□ -1.44
ATXN3-220ENST00000553491 RAG1P15918 1043 aa6.05□□□□□ -1.44
ATXN3-220ENST00000553491 RFC4P35249 363 aa6.05□□□□□ -1.44
ATXN3-220ENST00000553491 CCNFP41002 786 aa6.05□□□□□ -1.44
ATXN3-220ENST00000553491 TMPOP42166 694 aaKnown RBP6.05□□□□□ -1.44
ATXN3-220ENST00000553491 ITPK1Q13572 414 aa6.05□□□□□ -1.44
ATXN3-220ENST00000553491 FXNQ16595 210 aa6.05□□□□□ -1.44
ATXN3-220ENST00000553491 DDR2Q16832 855 aa6.05□□□□□ -1.44
ATXN3-220ENST00000553491 COL23A1Q86Y22 540 aaPredicted RBP6.05□□□□□ -1.44
ATXN3-220ENST00000553491 CREG2Q8IUH2 290 aa6.05□□□□□ -1.44
ATXN3-220ENST00000553491 DNAJC10Q8IXB1 793 aa6.05□□□□□ -1.44
ATXN3-220ENST00000553491 TMEM192Q8IY95 271 aa6.05□□□□□ -1.44
ATXN3-220ENST00000553491 NGEFQ8N5V2 710 aa6.05□□□□□ -1.44
ATXN3-220ENST00000553491 LINC00116Q8NCU8 138 aa6.05□□□□□ -1.44
ATXN3-220ENST00000553491 KRTAP4-7Q9BYR0 210 aa6.05□□□□□ -1.44
ATXN3-220ENST00000553491 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.05□□□□□ -1.44
ATXN3-220ENST00000553491 GPATCH2Q9NW75 528 aa6.05□□□□□ -1.44
ATXN3-220ENST00000553491 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.05□□□□□ -1.44
ATXN3-220ENST00000553491 MSRB2Q9Y3D2 182 aa6.05□□□□□ -1.44
ATXN3-220ENST00000553491 COL5A3P25940 1745 aaPredicted RBP6.05□□□□□ -1.44
ATXN3-220ENST00000553491 CACNA1SQ13698 1873 aa6.05□□□□□ -1.44
ATXN3-220ENST00000553491 FAM221BA6H8Z2 402 aa6.04□□□□□ -1.44
ATXN3-220ENST00000553491 HTATSF1O43719 755 aaKnown RBP6.04□□□□□ -1.44
ATXN3-220ENST00000553491 SMARCA5O60264 1052 aaPredicted RBP6.04□□□□□ -1.44
ATXN3-220ENST00000553491 POLD1P28340 1107 aa6.04□□□□□ -1.44
ATXN3-220ENST00000553491 AFMP43652 599 aa6.04□□□□□ -1.44
ATXN3-220ENST00000553491 RASA3Q14644 834 aa6.04□□□□□ -1.44
ATXN3-220ENST00000553491 NBPF9Q3BBW0 867 aa6.04□□□□□ -1.44
ATXN3-220ENST00000553491 ZNF790Q6PG37 636 aa6.04□□□□□ -1.44
ATXN3-220ENST00000553491 ZSWIM9Q86XI8 627 aa6.04□□□□□ -1.44
ATXN3-220ENST00000553491 PLEKHF1Q96S99 279 aa6.04□□□□□ -1.44
ATXN3-220ENST00000553491 ADAMTS10Q9H324 1103 aa6.04□□□□□ -1.44
ATXN3-220ENST00000553491 SLAMF8Q9P0V8 285 aa6.04□□□□□ -1.44
ATXN3-220ENST00000553491 DUSP13Q9UII6 198 aa6.04□□□□□ -1.44
ATXN3-220ENST00000553491 TMEM59LQ9UK28 342 aa6.04□□□□□ -1.44
ATXN3-220ENST00000553491 PCDHA11Q9Y5I1 949 aa6.04□□□□□ -1.44
ATXN3-220ENST00000553491 CCDC88AQ3V6T2 1871 aa6.04□□□□□ -1.44
ATXN3-220ENST00000553491 NUP98P52948 1817 aa6.04□□□□□ -1.44
ATXN3-220ENST00000553491 CASZ1Q86V15 1759 aa6.03□□□□□ -1.44
ATXN3-220ENST00000553491 UBR2Q8IWV8 1755 aa6.03□□□□□ -1.44
ATXN3-220ENST00000553491 TJP1Q07157 1748 aa6.03□□□□□ -1.44
ATXN3-220ENST00000553491 CCDC85CA6NKD9 419 aa6.03□□□□□ -1.44
ATXN3-220ENST00000553491 B2RBV5 119 aa6.03□□□□□ -1.44
ATXN3-220ENST00000553491 GJB6O95452 261 aa6.03□□□□□ -1.44
ATXN3-220ENST00000553491 STARD3NLO95772 234 aa6.03□□□□□ -1.44
ATXN3-220ENST00000553491 A1BGP04217 495 aa6.03□□□□□ -1.44
ATXN3-220ENST00000553491 EIF2S2P20042 333 aaKnown RBP6.03□□□□□ -1.44
ATXN3-220ENST00000553491 CRKLP46109 303 aaKnown RBP6.03□□□□□ -1.44
ATXN3-220ENST00000553491 PIP4K2AP48426 406 aaPredicted RBP6.03□□□□□ -1.44
ATXN3-220ENST00000553491 ERVFC1P60507 584 aa6.03□□□□□ -1.44
ATXN3-220ENST00000553491 LMOD3Q0VAK6 560 aa6.03□□□□□ -1.44
ATXN3-220ENST00000553491 SNW1Q13573 536 aaKnown RBP6.03□□□□□ -1.44
ATXN3-220ENST00000553491 C6orf15Q6UXA7 325 aaPredicted RBP6.03□□□□□ -1.44
ATXN3-220ENST00000553491 ENOX1Q8TC92 643 aaKnown RBP6.03□□□□□ -1.44
ATXN3-220ENST00000553491 ZNF496Q96IT1 587 aaPredicted RBP6.03□□□□□ -1.44
ATXN3-220ENST00000553491 DEPDC7Q96QD5 511 aa6.03□□□□□ -1.44
ATXN3-220ENST00000553491 SRPK1Q96SB4 655 aaKnown RBP6.03□□□□□ -1.44
ATXN3-220ENST00000553491 HDAC8Q9BY41 377 aa6.03□□□□□ -1.44
ATXN3-220ENST00000553491 CCDC113Q9H0I3 377 aa6.03□□□□□ -1.44
ATXN3-220ENST00000553491 SNTG2Q9NY99 539 aa6.03□□□□□ -1.44
ATXN3-220ENST00000553491 EBF1Q9UH73 591 aa6.03□□□□□ -1.44
ATXN3-220ENST00000553491 TSPYL4Q9UJ04 414 aa6.03□□□□□ -1.44
ATXN3-220ENST00000553491 PCDHB10Q9UN67 800 aa6.03□□□□□ -1.44
ATXN3-220ENST00000553491 SLC12A7Q9Y666 1083 aa6.03□□□□□ -1.44
ATXN3-220ENST00000553491 N4BP2Q86UW6 1770 aaPredicted RBP6.03□□□□□ -1.44
ATXN3-220ENST00000553491 PNPLA7Q6ZV29 1317 aa6.02□□□□□ -1.45
ATXN3-220ENST00000553491 CACNA1FO60840 1977 aa6.02□□□□□ -1.45
ATXN3-220ENST00000553491 AFDNP55196 1824 aaKnown RBP6.02□□□□□ -1.45
ATXN3-220ENST00000553491 CHD4Q14839 1912 aa6.02□□□□□ -1.45
ATXN3-220ENST00000553491 NPHP1O15259 732 aa6.02□□□□□ -1.45
ATXN3-220ENST00000553491 RPS6KA4O75676 772 aa6.02□□□□□ -1.45
ATXN3-220ENST00000553491 HPXP02790 462 aa6.02□□□□□ -1.45
ATXN3-220ENST00000553491 ZGLP1P0C6A0 271 aa6.02□□□□□ -1.45
ATXN3-220ENST00000553491 RNF4P78317 190 aa6.02□□□□□ -1.45
ATXN3-220ENST00000553491 TEKQ02763 1124 aa6.02□□□□□ -1.45
ATXN3-220ENST00000553491 EGR3Q06889 387 aa6.02□□□□□ -1.45
ATXN3-220ENST00000553491 MESP2Q0VG99 397 aa6.02□□□□□ -1.45
ATXN3-220ENST00000553491 LRP10Q7Z4F1 713 aa6.02□□□□□ -1.45
ATXN3-220ENST00000553491 TMC3Q7Z5M5 1100 aa6.02□□□□□ -1.45
ATXN3-220ENST00000553491 FAM178BQ8IXR5 827 aa6.02□□□□□ -1.45
ATXN3-220ENST00000553491 PNISRQ8TF01 805 aaKnown RBP6.02□□□□□ -1.45
ATXN3-220ENST00000553491 MRFAP1L1Q96HT8 127 aa6.02□□□□□ -1.45
ATXN3-220ENST00000553491 TEX13AQ9BXU3 409 aaPredicted RBP6.02□□□□□ -1.45
ATXN3-220ENST00000553491 MTFR1LQ9H019 292 aa6.02□□□□□ -1.45
ATXN3-220ENST00000553491 PHAXQ9H814 394 aaKnown RBP6.02□□□□□ -1.45
ATXN3-220ENST00000553491 ZNF214Q9UL59 606 aaPredicted RBP6.02□□□□□ -1.45
ATXN3-220ENST00000553491 USP16Q9Y5T5 823 aa6.02□□□□□ -1.45
ATXN3-220ENST00000553491 KDM3BQ7LBC6 1761 aa6.02□□□□□ -1.45
ATXN3-220ENST00000553491 PAPPAQ13219 1627 aa6.01□□□□□ -1.45
ATXN3-220ENST00000553491 PRAMEF22A3QJZ6 481 aa6.01□□□□□ -1.45
ATXN3-220ENST00000553491 ELL2O00472 640 aaPredicted RBP6.01□□□□□ -1.45
ATXN3-220ENST00000553491 DDAH1O94760 285 aa6.01□□□□□ -1.45
ATXN3-220ENST00000553491 SNRPA1P09661 255 aaKnown RBP6.01□□□□□ -1.45
ATXN3-220ENST00000553491 CYP19A1P11511 503 aaPredicted RBP6.01□□□□□ -1.45
ATXN3-220ENST00000553491 MYL6BP14649 208 aa6.01□□□□□ -1.45
ATXN3-220ENST00000553491 NMIQ13287 307 aaPredicted RBP6.01□□□□□ -1.45
ATXN3-220ENST00000553491 KCNMB1Q16558 191 aa6.01□□□□□ -1.45
ATXN3-220ENST00000553491 MRM1Q6IN84 353 aaKnown RBP6.01□□□□□ -1.45
ATXN3-220ENST00000553491 SYTL5Q8TDW5 730 aaPredicted RBP6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms