RNA–Protein interactions for RNA: ENST00000553145.1

HDAC4-217, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-217ENST00000553145 WNT8AQ9H1J5 351 aa21.48■■□□□ 1.03
HDAC4-217ENST00000553145 C6orf50Q9HD87 102 aa21.48■■□□□ 1.03
HDAC4-217ENST00000553145 PKD2L1Q9P0L9 805 aa21.48■■□□□ 1.03
HDAC4-217ENST00000553145 LGALS2P05162 132 aa21.47■■□□□ 1.03
HDAC4-217ENST00000553145 SUPT20HL2P0C7V6 817 aa21.47■■□□□ 1.03
HDAC4-217ENST00000553145 SP4Q02446 784 aa21.47■■□□□ 1.03
HDAC4-217ENST00000553145 KIAA0753Q2KHM9 967 aa21.47■■□□□ 1.03
HDAC4-217ENST00000553145 GDF6Q6KF10 455 aaPredicted RBP21.47■■□□□ 1.03
HDAC4-217ENST00000553145 TRIM22Q8IYM9 498 aa21.47■■□□□ 1.03
HDAC4-217ENST00000553145 RASGRP4Q8TDF6 673 aa21.47■■□□□ 1.03
HDAC4-217ENST00000553145 AIFM3Q96NN9 605 aa21.47■■□□□ 1.03
HDAC4-217ENST00000553145 MXRA8Q9BRK3 442 aa21.47■■□□□ 1.03
HDAC4-217ENST00000553145 KATNAL1Q9BW62 490 aa21.47■■□□□ 1.03
HDAC4-217ENST00000553145 HDAC6Q9UBN7 1215 aa21.47■■□□□ 1.03
HDAC4-217ENST00000553145 NOP56O00567 594 aaKnown RBP21.46■■□□□ 1.03
HDAC4-217ENST00000553145 PFKFB2O60825 505 aa21.46■■□□□ 1.03
HDAC4-217ENST00000553145 LARGE1O95461 756 aa21.46■■□□□ 1.03
HDAC4-217ENST00000553145 CCL23P55773 120 aa21.46■■□□□ 1.03
HDAC4-217ENST00000553145 C16orf59Q7L2K0 433 aa21.46■■□□□ 1.03
HDAC4-217ENST00000553145 REXO1Q8N1G1 1221 aaKnown RBP21.46■■□□□ 1.03
HDAC4-217ENST00000553145 TMEM199Q8N511 208 aa21.46■■□□□ 1.03
HDAC4-217ENST00000553145 CCDC148Q8NFR7 591 aa21.46■■□□□ 1.03
HDAC4-217ENST00000553145 CRYGNQ8WXF5 182 aa21.46■■□□□ 1.03
HDAC4-217ENST00000553145 CDHR1Q96JP9 859 aa21.46■■□□□ 1.03
HDAC4-217ENST00000553145 SLKQ9H2G2 1235 aaPredicted RBP21.46■■□□□ 1.03
HDAC4-217ENST00000553145 GTF2IRD1Q9UHL9 959 aa21.46■■□□□ 1.03
HDAC4-217ENST00000553145 DEXIO95424 95 aa21.45■■□□□ 1.02
HDAC4-217ENST00000553145 ARHGAP4P98171 946 aa21.45■■□□□ 1.02
HDAC4-217ENST00000553145 HIC1Q14526 733 aa21.45■■□□□ 1.02
HDAC4-217ENST00000553145 ANKRD1Q15327 319 aa21.45■■□□□ 1.02
HDAC4-217ENST00000553145 TRIM50Q86XT4 487 aa21.45■■□□□ 1.02
HDAC4-217ENST00000553145 KCNH7Q9NS40 1196 aa21.45■■□□□ 1.02
HDAC4-217ENST00000553145 ARP10275 920 aa21.44■■□□□ 1.02
HDAC4-217ENST00000553145 ACRP10323 421 aa21.44■■□□□ 1.02
HDAC4-217ENST00000553145 GNA11P29992 359 aa21.44■■□□□ 1.02
HDAC4-217ENST00000553145 NEK4P51957 841 aa21.44■■□□□ 1.02
HDAC4-217ENST00000553145 PPIGQ13427 754 aaKnown RBP eCLIP21.44■■□□□ 1.02
HDAC4-217ENST00000553145 PTGISQ16647 500 aa21.44■■□□□ 1.02
HDAC4-217ENST00000553145 CEP55Q53EZ4 464 aa21.44■■□□□ 1.02
HDAC4-217ENST00000553145 CPLX2Q6PUV4 134 aaKnown RBP21.44■■□□□ 1.02
HDAC4-217ENST00000553145 C7orf31Q8N865 590 aa21.44■■□□□ 1.02
HDAC4-217ENST00000553145 GIMAP8Q8ND71 665 aaPredicted RBP21.44■■□□□ 1.02
HDAC4-217ENST00000553145 SCLYQ96I15 445 aa21.44■■□□□ 1.02
HDAC4-217ENST00000553145 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.44■■□□□ 1.02
HDAC4-217ENST00000553145 SH3GLB2Q9NR46 395 aa21.44■■□□□ 1.02
HDAC4-217ENST00000553145 FAM86B1E9PN63 330 aa21.43■■□□□ 1.02
HDAC4-217ENST00000553145 H3BRB1 525 aa21.43■■□□□ 1.02
HDAC4-217ENST00000553145 MEIS1O00470 390 aa21.43■■□□□ 1.02
HDAC4-217ENST00000553145 MAFGO15525 162 aa21.43■■□□□ 1.02
HDAC4-217ENST00000553145 CTDNEP1O95476 244 aa21.43■■□□□ 1.02
HDAC4-217ENST00000553145 FAM86B2P0C5J1 330 aa21.43■■□□□ 1.02
HDAC4-217ENST00000553145 NLRP5P59047 1200 aa21.43■■□□□ 1.02
HDAC4-217ENST00000553145 ME3Q16798 604 aa21.43■■□□□ 1.02
HDAC4-217ENST00000553145 DHX38Q92620 1227 aaKnown RBP21.43■■□□□ 1.02
HDAC4-217ENST00000553145 VWCEQ96DN2 955 aa21.43■■□□□ 1.02
HDAC4-217ENST00000553145 TUT1Q9H6E5 874 aaKnown RBP21.43■■□□□ 1.02
HDAC4-217ENST00000553145 NOD1Q9Y239 953 aa21.43■■□□□ 1.02
HDAC4-217ENST00000553145 LAMA3Q16787 3333 aa21.43■■□□□ 1.02
HDAC4-217ENST00000553145 IGLV3-22A0A075B6J6 115 aa21.42■■□□□ 1.02
HDAC4-217ENST00000553145 GSTTP1A0A1W2PQM5 241 aa21.42■■□□□ 1.02
HDAC4-217ENST00000553145 CYP3A4P08684 503 aa21.42■■□□□ 1.02
HDAC4-217ENST00000553145 ZNF200P98182 395 aaPredicted RBP21.42■■□□□ 1.02
HDAC4-217ENST00000553145 NPY5RQ15761 445 aa21.42■■□□□ 1.02
HDAC4-217ENST00000553145 TMEM240Q5SV17 173 aa21.42■■□□□ 1.02
HDAC4-217ENST00000553145 UTP14CQ5TAP6 766 aaKnown RBP21.42■■□□□ 1.02
HDAC4-217ENST00000553145 MCTP2Q6DN12 878 aa21.42■■□□□ 1.02
HDAC4-217ENST00000553145 NECAB1Q8N987 351 aa21.42■■□□□ 1.02
HDAC4-217ENST00000553145 RNPC3Q96LT9 517 aaKnown RBP21.42■■□□□ 1.02
HDAC4-217ENST00000553145 TANC1Q9C0D5 1861 aa21.42■■□□□ 1.02
HDAC4-217ENST00000553145 AGO4Q9HCK5 861 aaKnown RBP21.42■■□□□ 1.02
HDAC4-217ENST00000553145 IL23AQ9NPF7 189 aa21.42■■□□□ 1.02
HDAC4-217ENST00000553145 STK36Q9NRP7 1315 aa21.41■■□□□ 1.02
HDAC4-217ENST00000553145 TCF7P36402 384 aaPredicted RBP21.41■■□□□ 1.02
HDAC4-217ENST00000553145 ITGB3BPQ13352 177 aaPredicted RBP21.41■■□□□ 1.02
HDAC4-217ENST00000553145 BICD2Q8TD16 824 aa21.41■■□□□ 1.02
HDAC4-217ENST00000553145 KIF2CQ99661 725 aa21.41■■□□□ 1.02
HDAC4-217ENST00000553145 EDIL3O43854 480 aa21.4■■□□□ 1.02
HDAC4-217ENST00000553145 CDKL5O76039 1030 aa21.4■■□□□ 1.02
HDAC4-217ENST00000553145 HOXC8P31273 242 aa21.4■■□□□ 1.02
HDAC4-217ENST00000553145 ZNF76P36508 570 aa21.4■■□□□ 1.02
HDAC4-217ENST00000553145 ZNF365Q70YC5 407 aa21.4■■□□□ 1.02
HDAC4-217ENST00000553145 NIPA1Q7RTP0 329 aa21.4■■□□□ 1.02
HDAC4-217ENST00000553145 SEPT1Q8WYJ6 367 aa21.4■■□□□ 1.02
HDAC4-217ENST00000553145 WNT8BQ93098 351 aa21.4■■□□□ 1.02
HDAC4-217ENST00000553145 GTF3C6Q969F1 213 aa21.4■■□□□ 1.02
HDAC4-217ENST00000553145 JPH1Q9HDC5 661 aaPredicted RBP21.4■■□□□ 1.02
HDAC4-217ENST00000553145 PCDHA4Q9UN74 947 aa21.4■■□□□ 1.02
HDAC4-217ENST00000553145 SCN5AQ14524 2016 aa21.39■■□□□ 1.02
HDAC4-217ENST00000553145 NFASCO94856 1347 aa21.39■■□□□ 1.01
HDAC4-217ENST00000553145 RBAK-RBAKDNI3L0D1 243 aa21.39■■□□□ 1.01
HDAC4-217ENST00000553145 M0R2N6 131 aa21.39■■□□□ 1.01
HDAC4-217ENST00000553145 PITPNM1O00562 1244 aa21.39■■□□□ 1.01
HDAC4-217ENST00000553145 SMIM10L2AP0DMW4 78 aa21.39■■□□□ 1.01
HDAC4-217ENST00000553145 SMIM10L2BP0DMW5 78 aa21.39■■□□□ 1.01
HDAC4-217ENST00000553145 ST3GAL1Q11201 340 aa21.39■■□□□ 1.01
HDAC4-217ENST00000553145 PSRC1Q6PGN9 363 aaPredicted RBP21.39■■□□□ 1.01
HDAC4-217ENST00000553145 PLA2G4DQ86XP0 818 aa21.39■■□□□ 1.01
HDAC4-217ENST00000553145 GJB4Q9NTQ9 266 aa21.39■■□□□ 1.01
HDAC4-217ENST00000553145 SLC9A2Q9UBY0 812 aa21.39■■□□□ 1.01
HDAC4-217ENST00000553145 IQCF3P0C7M6 154 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms