RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 PRKCAP17252 672 aa5.02□□□□□ -1.61
LIMA1-206ENST00000550611 GNA15P30679 374 aa5.02□□□□□ -1.61
LIMA1-206ENST00000550611 SAPCD2Q86UD0 394 aa5.02□□□□□ -1.61
LIMA1-206ENST00000550611 TTC9BQ8N6N2 239 aa5.02□□□□□ -1.61
LIMA1-206ENST00000550611 ZCRB1Q8TBF4 217 aaKnown RBP5.02□□□□□ -1.61
LIMA1-206ENST00000550611 FNIP1Q8TF40 1166 aa5.02□□□□□ -1.61
LIMA1-206ENST00000550611 PUS7Q96PZ0 661 aaKnown RBP5.02□□□□□ -1.61
LIMA1-206ENST00000550611 RBM15Q96T37 977 aaKnown RBP eCLIP5.02□□□□□ -1.61
LIMA1-206ENST00000550611 SLC12A5Q9H2X9 1139 aa5.02□□□□□ -1.61
LIMA1-206ENST00000550611 REV1Q9UBZ9 1251 aa5.02□□□□□ -1.61
LIMA1-206ENST00000550611 SUSD2Q9UGT4 822 aa5.02□□□□□ -1.61
LIMA1-206ENST00000550611 QSER1Q2KHR3 1735 aa5.02□□□□□ -1.61
LIMA1-206ENST00000550611 RGPD5Q99666 1765 aa5.01□□□□□ -1.61
LIMA1-206ENST00000550611 FAM221AA4D161 298 aa5.01□□□□□ -1.61
LIMA1-206ENST00000550611 GLTPD2A6NH11 291 aa5.01□□□□□ -1.61
LIMA1-206ENST00000550611 RGS13O14921 159 aa5.01□□□□□ -1.61
LIMA1-206ENST00000550611 NOBOXO60393 691 aa5.01□□□□□ -1.61
LIMA1-206ENST00000550611 BPNT1O95861 308 aa5.01□□□□□ -1.61
LIMA1-206ENST00000550611 MMP10P09238 476 aa5.01□□□□□ -1.61
LIMA1-206ENST00000550611 FBLN1P23142 703 aa5.01□□□□□ -1.61
LIMA1-206ENST00000550611 HOXC9P31274 260 aa5.01□□□□□ -1.61
LIMA1-206ENST00000550611 NBPF9Q3BBW0 867 aa5.01□□□□□ -1.61
LIMA1-206ENST00000550611 ZC3H14Q6PJT7 736 aaKnown RBP5.01□□□□□ -1.61
LIMA1-206ENST00000550611 LSRQ86X29 649 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-206ENST00000550611 EAF1Q96JC9 268 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-206ENST00000550611 ASB16Q96NS5 453 aa5.01□□□□□ -1.61
LIMA1-206ENST00000550611 SPATA25Q9BR10 227 aa5.01□□□□□ -1.61
LIMA1-206ENST00000550611 KLHL3Q9UH77 587 aa5.01□□□□□ -1.61
LIMA1-206ENST00000550611 WNK3Q9BYP7 1800 aa5.01□□□□□ -1.61
LIMA1-206ENST00000550611 PXDNLA1KZ92 1463 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 MAP3K19Q56UN5 1328 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 EDC4Q6P2E9 1401 aaKnown RBP5□□□□□ -1.61
LIMA1-206ENST00000550611 HTR3BO95264 441 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 ZNF20P17024 532 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 CNR2P34972 360 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 HMGA2P52926 109 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 CHMP4BP1P59074 171 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 TGFB2P61812 414 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 ZNF200P98182 395 aaPredicted RBP5□□□□□ -1.61
LIMA1-206ENST00000550611 PDE4CQ08493 712 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 GRM1Q13255 1194 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 HABP4Q5JVS0 413 aaKnown RBP5□□□□□ -1.61
LIMA1-206ENST00000550611 NBPF6Q5VWK0 638 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 HDGFL2Q7Z4V5 671 aaPredicted RBP5□□□□□ -1.61
LIMA1-206ENST00000550611 TMC3Q7Z5M5 1100 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 PHACTR4Q8IZ21 702 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 PHC3Q8NDX5 983 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 NBPF4Q96M43 638 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 SAMD11Q96NU1 681 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 SIN3AQ96ST3 1273 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 KIF2CQ99661 725 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 TRAIPQ9BWF2 469 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 LNPKQ9C0E8 428 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 DUSP10Q9Y6W6 482 aa5□□□□□ -1.61
LIMA1-206ENST00000550611 CICQ96RK0 1608 aaPredicted RBP5□□□□□ -1.61
LIMA1-206ENST00000550611 CGNL1Q0VF96 1302 aa4.99□□□□□ -1.61
LIMA1-206ENST00000550611 WDR33Q9C0J8 1336 aaKnown RBP4.99□□□□□ -1.61
LIMA1-206ENST00000550611 C10orf71Q711Q0 1435 aa4.99□□□□□ -1.61
LIMA1-206ENST00000550611 A0A1B0GTL3 188 aa4.99□□□□□ -1.61
LIMA1-206ENST00000550611 SIGLEC6O43699 453 aa4.99□□□□□ -1.61
LIMA1-206ENST00000550611 PLA2G1BP04054 148 aaKnown RBP4.99□□□□□ -1.61
LIMA1-206ENST00000550611 HMGB2P26583 209 aaKnown RBP4.99□□□□□ -1.61
LIMA1-206ENST00000550611 CHRNA5P30532 468 aa4.99□□□□□ -1.61
LIMA1-206ENST00000550611 GBP1P32455 592 aa4.99□□□□□ -1.61
LIMA1-206ENST00000550611 DEFB115Q30KQ5 88 aa4.99□□□□□ -1.61
LIMA1-206ENST00000550611 ADGRG2Q8IZP9 1017 aa4.99□□□□□ -1.61
LIMA1-206ENST00000550611 NUP43Q8NFH3 380 aa4.99□□□□□ -1.61
LIMA1-206ENST00000550611 LTV1Q96GA3 475 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-206ENST00000550611 NOC4LQ9BVI4 516 aaKnown RBP4.99□□□□□ -1.61
LIMA1-206ENST00000550611 RNF38Q9H0F5 515 aa4.99□□□□□ -1.61
LIMA1-206ENST00000550611 ERVK13-1Q9NX77 482 aa4.99□□□□□ -1.61
LIMA1-206ENST00000550611 TERF2IPQ9NYB0 399 aa4.99□□□□□ -1.61
LIMA1-206ENST00000550611 TLR6Q9Y2C9 796 aa4.99□□□□□ -1.61
LIMA1-206ENST00000550611 PMF1-BGLAPU3KQ54 211 aa4.99□□□□□ -1.61
LIMA1-206ENST00000550611 A0A1W2PP64 1363 aa4.99□□□□□ -1.61
LIMA1-206ENST00000550611 ROCK2O75116 1388 aaKnown RBP4.99□□□□□ -1.61
LIMA1-206ENST00000550611 USP47Q96K76 1375 aa4.99□□□□□ -1.61
LIMA1-206ENST00000550611 QRICH2Q9H0J4 1663 aa4.99□□□□□ -1.61
LIMA1-206ENST00000550611 CASP8AP2Q9UKL3 1982 aa4.98□□□□□ -1.61
LIMA1-206ENST00000550611 MEGF6O75095 1541 aa4.98□□□□□ -1.61
LIMA1-206ENST00000550611 CYP27B1O15528 508 aa4.98□□□□□ -1.61
LIMA1-206ENST00000550611 DNAJA2O60884 412 aa4.98□□□□□ -1.61
LIMA1-206ENST00000550611 PRAMEF1O95521 474 aa4.98□□□□□ -1.61
LIMA1-206ENST00000550611 LDHBP07195 334 aaKnown RBP4.98□□□□□ -1.61
LIMA1-206ENST00000550611 FOXO4P98177 505 aa4.98□□□□□ -1.61
LIMA1-206ENST00000550611 DLX2Q07687 328 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-206ENST00000550611 DALRD3Q5D0E6 543 aaKnown RBP4.98□□□□□ -1.61
LIMA1-206ENST00000550611 NBPF12Q5TAG4 269 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-206ENST00000550611 BNC2Q6ZN30 1099 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-206ENST00000550611 GATAD2BQ8WXI9 593 aa4.98□□□□□ -1.61
LIMA1-206ENST00000550611 DDX1Q92499 740 aaKnown RBP4.98□□□□□ -1.61
LIMA1-206ENST00000550611 MENTQ9BUN1 341 aa4.98□□□□□ -1.61
LIMA1-206ENST00000550611 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.98□□□□□ -1.61
LIMA1-206ENST00000550611 AK5Q9Y6K8 562 aa4.98□□□□□ -1.61
LIMA1-206ENST00000550611 COL6A3P12111 3177 aa4.98□□□□□ -1.61
LIMA1-206ENST00000550611 PLEKHG2Q9H7P9 1386 aa4.98□□□□□ -1.61
LIMA1-206ENST00000550611 USP54Q70EL1 1684 aa4.98□□□□□ -1.61
LIMA1-206ENST00000550611 MKI67P46013 3256 aaKnown RBP4.98□□□□□ -1.61
LIMA1-206ENST00000550611 PASKQ96RG2 1323 aa4.97□□□□□ -1.61
LIMA1-206ENST00000550611 SBF1O95248 1867 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms