RNA–Protein interactions for RNA: ENST00000550283.1

RAB5B-208, Transcript of RAB5B, member RAS oncogene family, human

TSL 3

Gene RAB5B, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB5B-208	ENST00000550283	PPTC7	Q8NI37	304 aa		12.81	□□□□□ -0.36
RAB5B-208	ENST00000550283	TNFRSF25	Q93038	417 aa		12.81	□□□□□ -0.36
RAB5B-208	ENST00000550283	VTI1A	Q96AJ9	217 aa		12.81	□□□□□ -0.36
RAB5B-208	ENST00000550283	SPATA33	Q96N06	139 aa		12.81	□□□□□ -0.36
RAB5B-208	ENST00000550283	GPR20	Q99678	358 aa		12.81	□□□□□ -0.36
RAB5B-208	ENST00000550283	C16orf70	Q9BSU1	422 aa		12.81	□□□□□ -0.36
RAB5B-208	ENST00000550283	KCNH7	Q9NS40	1196 aa		12.81	□□□□□ -0.36
RAB5B-208	ENST00000550283	TRMT13	Q9NUP7	481 aa	Known RBP	12.81	□□□□□ -0.36
RAB5B-208	ENST00000550283	RBM27	Q9P2N5	1060 aa	Known RBP	12.81	□□□□□ -0.36
RAB5B-208	ENST00000550283	PCDHA4	Q9UN74	947 aa		12.81	□□□□□ -0.36
RAB5B-208	ENST00000550283	GSTTP1	A0A1W2PQM5	241 aa		12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	DHX15	O43143	795 aa	Known RBP	12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	EIF5B	O60841	1220 aa	Known RBP	12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	TDP2	O95551	362 aa		12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	FOS	P01100	380 aa	Predicted RBP	12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	CYP3A4	P08684	503 aa		12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	CPT1A	P50416	773 aa		12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	EPHB4	P54760	987 aa		12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	CHMP4BP1	P59074	171 aa		12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	ZNF200	P98182	395 aa	Predicted RBP	12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	MDM2	Q00987	491 aa	Predicted RBP	12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	MTMR1	Q13613	665 aa		12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	LAMC2	Q13753	1193 aa		12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	CEP55	Q53EZ4	464 aa		12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	DAGLB	Q8NCG7	672 aa		12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	WNT8B	Q93098	351 aa		12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	GPRASP2	Q96D09	838 aa		12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	VWCE	Q96DN2	955 aa		12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	TMX3	Q96JJ7	454 aa		12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	PCYT2	Q99447	389 aa		12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	GDF15	Q99988	308 aa		12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	MTG1	Q9BT17	334 aa	Predicted RBP	12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	AGO4	Q9HCK5	861 aa	Known RBP	12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	PRDM5	Q9NQX1	630 aa	Predicted RBP	12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	TBX21	Q9UL17	535 aa		12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	RBM19	Q9Y4C8	960 aa	Known RBP	12.8	□□□□□ -0.36
RAB5B-208	ENST00000550283	HAS3	O00219	553 aa		12.79	□□□□□ -0.36
RAB5B-208	ENST00000550283	STAM2	O75886	525 aa		12.79	□□□□□ -0.36
RAB5B-208	ENST00000550283	CDKL5	O76039	1030 aa		12.79	□□□□□ -0.36
RAB5B-208	ENST00000550283	CCNE2	O96020	404 aa		12.79	□□□□□ -0.36
RAB5B-208	ENST00000550283	F2	P00734	622 aa		12.79	□□□□□ -0.36
RAB5B-208	ENST00000550283	TGFB3	P10600	412 aa		12.79	□□□□□ -0.36
RAB5B-208	ENST00000550283	CYP2C9	P11712	490 aa		12.79	□□□□□ -0.36
RAB5B-208	ENST00000550283	CPLX2	Q6PUV4	134 aa	Known RBP	12.79	□□□□□ -0.36
RAB5B-208	ENST00000550283	METTL7B	Q6UX53	244 aa		12.79	□□□□□ -0.36
RAB5B-208	ENST00000550283	CCDC148	Q8NFR7	591 aa		12.79	□□□□□ -0.36
RAB5B-208	ENST00000550283	TBCK	Q8TEA7	893 aa		12.79	□□□□□ -0.36
RAB5B-208	ENST00000550283	MLXIP	Q9HAP2	919 aa		12.79	□□□□□ -0.36
RAB5B-208	ENST00000550283	POLR3E	Q9NVU0	708 aa		12.79	□□□□□ -0.36
RAB5B-208	ENST00000550283	NR2E3	Q9Y5X4	410 aa		12.79	□□□□□ -0.36
RAB5B-208	ENST00000550283	LAMA2	P24043	3122 aa	Known RBP	12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	DDX39A	O00148	427 aa	Known RBP	12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	LGALS2	P05162	132 aa		12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	CLTB	P09497	229 aa		12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	GNA11	P29992	359 aa		12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	CIITA	P33076	1130 aa		12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	PSEN2	P49810	448 aa		12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	INF2	Q27J81	1249 aa		12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	GNPTAB	Q3T906	1256 aa		12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	KRT40	Q6A162	431 aa		12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	GDF6	Q6KF10	455 aa	Predicted RBP	12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	NLRX1	Q86UT6	975 aa		12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	PLA2G4D	Q86XP0	818 aa		12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	CCDC12	Q8WUD4	166 aa	Predicted RBP	12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	DHX38	Q92620	1227 aa	Known RBP	12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	BAD	Q92934	168 aa		12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	ZBTB10	Q96DT7	871 aa		12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	SENP7	Q9BQF6	1050 aa		12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	HDAC6	Q9UBN7	1215 aa		12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	LAMA3	Q16787	3333 aa		12.78	□□□□□ -0.36
RAB5B-208	ENST00000550283	BTBD18	B2RXH4	712 aa		12.77	□□□□□ -0.37
RAB5B-208	ENST00000550283	KIAA0355	O15063	1070 aa		12.77	□□□□□ -0.37
RAB5B-208	ENST00000550283	SLC37A4	O43826	429 aa		12.77	□□□□□ -0.37
RAB5B-208	ENST00000550283	ZEB2	O60315	1214 aa		12.77	□□□□□ -0.37
RAB5B-208	ENST00000550283	CABYR	O75952	493 aa		12.77	□□□□□ -0.37
RAB5B-208	ENST00000550283	CYP2C18	P33260	490 aa		12.77	□□□□□ -0.37
RAB5B-208	ENST00000550283	MFSD10	Q14728	455 aa		12.77	□□□□□ -0.37
RAB5B-208	ENST00000550283	DGKD	Q16760	1214 aa		12.77	□□□□□ -0.37
RAB5B-208	ENST00000550283	PRR16	Q569H4	304 aa		12.77	□□□□□ -0.37
RAB5B-208	ENST00000550283	UTP14C	Q5TAP6	766 aa	Known RBP	12.77	□□□□□ -0.37
RAB5B-208	ENST00000550283	KCNV1	Q6PIU1	500 aa		12.77	□□□□□ -0.37
RAB5B-208	ENST00000550283	TOX2	Q96NM4	488 aa		12.77	□□□□□ -0.37
RAB5B-208	ENST00000550283	PPP1R12C	Q9BZL4	782 aa		12.77	□□□□□ -0.37
RAB5B-208	ENST00000550283	GLT8D2	Q9H1C3	349 aa		12.77	□□□□□ -0.37
RAB5B-208	ENST00000550283	WNT8A	Q9H1J5	351 aa		12.77	□□□□□ -0.37
RAB5B-208	ENST00000550283	TMEM39A	Q9NV64	488 aa		12.77	□□□□□ -0.37
RAB5B-208	ENST00000550283	SZT2	Q5T011	3432 aa		12.76	□□□□□ -0.37
RAB5B-208	ENST00000550283	KIF28P	B7ZC32	967 aa		12.76	□□□□□ -0.37
RAB5B-208	ENST00000550283	MSH4	O15457	936 aa		12.76	□□□□□ -0.37
RAB5B-208	ENST00000550283	PPFIA4	O75335	1185 aa		12.76	□□□□□ -0.37
RAB5B-208	ENST00000550283	MMP1	P03956	469 aa		12.76	□□□□□ -0.37
RAB5B-208	ENST00000550283	TCF7	P36402	384 aa	Predicted RBP	12.76	□□□□□ -0.37
RAB5B-208	ENST00000550283	MKRN4P	Q13434	485 aa	Predicted RBP	12.76	□□□□□ -0.37
RAB5B-208	ENST00000550283	NEDD9	Q14511	834 aa		12.76	□□□□□ -0.37
RAB5B-208	ENST00000550283	KIAA0753	Q2KHM9	967 aa		12.76	□□□□□ -0.37
RAB5B-208	ENST00000550283	FAM47C	Q5HY64	1035 aa		12.76	□□□□□ -0.37
RAB5B-208	ENST00000550283	PIK3AP1	Q6ZUJ8	805 aa		12.76	□□□□□ -0.37
RAB5B-208	ENST00000550283	C16orf59	Q7L2K0	433 aa		12.76	□□□□□ -0.37
RAB5B-208	ENST00000550283	TEX2	Q8IWB9	1127 aa		12.76	□□□□□ -0.37
RAB5B-208	ENST00000550283	BICD2	Q8TD16	824 aa		12.76	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms