RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 NEDD9Q14511 834 aa15.37■□□□□ 0.05
CPSF6-204ENST00000547486 CCDC85BQ15834 202 aaPredicted RBP15.37■□□□□ 0.05
CPSF6-204ENST00000547486 METTL7BQ6UX53 244 aa15.37■□□□□ 0.05
CPSF6-204ENST00000547486 MICU3Q86XE3 530 aa15.37■□□□□ 0.05
CPSF6-204ENST00000547486 NEK1Q96PY6 1258 aa15.37■□□□□ 0.05
CPSF6-204ENST00000547486 SLC9A7Q96T83 725 aa15.37■□□□□ 0.05
CPSF6-204ENST00000547486 CERS4Q9HA82 394 aa15.37■□□□□ 0.05
CPSF6-204ENST00000547486 BRPF3Q9ULD4 1205 aa15.37■□□□□ 0.05
CPSF6-204ENST00000547486 BAIAP3O94812 1187 aa15.36■□□□□ 0.05
CPSF6-204ENST00000547486 SMIM10L2AP0DMW4 78 aa15.36■□□□□ 0.05
CPSF6-204ENST00000547486 SMIM10L2BP0DMW5 78 aa15.36■□□□□ 0.05
CPSF6-204ENST00000547486 ITGB5P18084 799 aa15.36■□□□□ 0.05
CPSF6-204ENST00000547486 HOXC8P31273 242 aa15.36■□□□□ 0.05
CPSF6-204ENST00000547486 WDR5P61964 334 aaKnown RBP15.36■□□□□ 0.05
CPSF6-204ENST00000547486 UBE2SQ16763 222 aa15.36■□□□□ 0.05
CPSF6-204ENST00000547486 TSGA10IPQ3SY00 556 aa15.36■□□□□ 0.05
CPSF6-204ENST00000547486 XRRA1Q6P2D8 792 aa15.36■□□□□ 0.05
CPSF6-204ENST00000547486 SPRED2Q7Z698 418 aa15.36■□□□□ 0.05
CPSF6-204ENST00000547486 SERINC5Q86VE9 423 aa15.36■□□□□ 0.05
CPSF6-204ENST00000547486 RNPEPQ9H4A4 650 aa15.36■□□□□ 0.05
CPSF6-204ENST00000547486 EPOPA6NHQ4 379 aa15.35■□□□□ 0.05
CPSF6-204ENST00000547486 NOP56O00567 594 aaKnown RBP15.35■□□□□ 0.05
CPSF6-204ENST00000547486 TREHO43280 583 aa15.35■□□□□ 0.05
CPSF6-204ENST00000547486 PARNO95453 639 aaKnown RBP15.35■□□□□ 0.05
CPSF6-204ENST00000547486 THPOP40225 353 aa15.35■□□□□ 0.05
CPSF6-204ENST00000547486 DEFB103AP81534 67 aa15.35■□□□□ 0.05
CPSF6-204ENST00000547486 TAP1Q03518 808 aa15.35■□□□□ 0.05
CPSF6-204ENST00000547486 FUT2Q10981 343 aa15.35■□□□□ 0.05
CPSF6-204ENST00000547486 RNF20Q5VTR2 975 aa15.35■□□□□ 0.05
CPSF6-204ENST00000547486 CNKSR3Q6P9H4 555 aa15.35■□□□□ 0.05
CPSF6-204ENST00000547486 APOA5Q6Q788 366 aa15.35■□□□□ 0.05
CPSF6-204ENST00000547486 DHX32Q7L7V1 743 aaKnown RBP15.35■□□□□ 0.05
CPSF6-204ENST00000547486 TRIM50Q86XT4 487 aa15.35■□□□□ 0.05
CPSF6-204ENST00000547486 ATP6V0A1Q93050 837 aa15.35■□□□□ 0.05
CPSF6-204ENST00000547486 SENP7Q9BQF6 1050 aa15.35■□□□□ 0.05
CPSF6-204ENST00000547486 USP26Q9BXU7 913 aa15.35■□□□□ 0.05
CPSF6-204ENST00000547486 OSBPL7Q9BZF2 842 aa15.35■□□□□ 0.05
CPSF6-204ENST00000547486 TET1Q8NFU7 2136 aa15.35■□□□□ 0.05
CPSF6-204ENST00000547486 C17orf102A2RUQ5 167 aa15.34■□□□□ 0.05
CPSF6-204ENST00000547486 LCHNA4D1U4 455 aa15.34■□□□□ 0.05
CPSF6-204ENST00000547486 CDC45O75419 566 aa15.34■□□□□ 0.05
CPSF6-204ENST00000547486 SP4Q02446 784 aa15.34■□□□□ 0.05
CPSF6-204ENST00000547486 UTP14CQ5TAP6 766 aaKnown RBP15.34■□□□□ 0.05
CPSF6-204ENST00000547486 TYW1BQ6NUM6 668 aa15.34■□□□□ 0.05
CPSF6-204ENST00000547486 HEATR3Q7Z4Q2 680 aa15.34■□□□□ 0.05
CPSF6-204ENST00000547486 NLRX1Q86UT6 975 aa15.34■□□□□ 0.05
CPSF6-204ENST00000547486 FAM217BQ9NTX9 383 aaPredicted RBP15.34■□□□□ 0.05
CPSF6-204ENST00000547486 SETD4Q9NVD3 440 aa15.34■□□□□ 0.05
CPSF6-204ENST00000547486 PCDHA6Q9UN73 950 aa15.34■□□□□ 0.05
CPSF6-204ENST00000547486 PCDHA8Q9Y5H6 950 aa15.34■□□□□ 0.05
CPSF6-204ENST00000547486 MYH7BA7E2Y1 1941 aa15.34■□□□□ 0.05
CPSF6-204ENST00000547486 TRIP12Q14669 1992 aaPredicted RBP15.33■□□□□ 0.05
CPSF6-204ENST00000547486 RSPH10B2B2RC85 870 aa15.33■□□□□ 0.04
CPSF6-204ENST00000547486 TLL1O43897 1013 aa15.33■□□□□ 0.04
CPSF6-204ENST00000547486 RSPH10BP0C881 870 aa15.33■□□□□ 0.04
CPSF6-204ENST00000547486 CPA1P15085 419 aa15.33■□□□□ 0.04
CPSF6-204ENST00000547486 KCNA2P16389 499 aa15.33■□□□□ 0.04
CPSF6-204ENST00000547486 KCNJ6P48051 423 aa15.33■□□□□ 0.04
CPSF6-204ENST00000547486 WWC2Q6AWC2 1192 aa15.33■□□□□ 0.04
CPSF6-204ENST00000547486 SYNE3Q6ZMZ3 975 aa15.33■□□□□ 0.04
CPSF6-204ENST00000547486 UBIAD1Q9Y5Z9 338 aa15.33■□□□□ 0.04
CPSF6-204ENST00000547486 V9GY48 417 aaPredicted RBP15.33■□□□□ 0.04
CPSF6-204ENST00000547486 CNTNAP5Q8WYK1 1306 aa15.33■□□□□ 0.04
CPSF6-204ENST00000547486 SPTBN5Q9NRC6 3674 aaKnown RBP15.33■□□□□ 0.04
CPSF6-204ENST00000547486 GBF1Q92538 1859 aa15.33■□□□□ 0.04
CPSF6-204ENST00000547486 ABHD14A-ACY1A0A1B0GW23 586 aa15.32■□□□□ 0.04
CPSF6-204ENST00000547486 GSTTP1A0A1W2PQM5 241 aa15.32■□□□□ 0.04
CPSF6-204ENST00000547486 KIF28PB7ZC32 967 aa15.32■□□□□ 0.04
CPSF6-204ENST00000547486 LGR5O75473 907 aa15.32■□□□□ 0.04
CPSF6-204ENST00000547486 CDC27P30260 824 aa15.32■□□□□ 0.04
CPSF6-204ENST00000547486 ADAM17P78536 824 aa15.32■□□□□ 0.04
CPSF6-204ENST00000547486 MKRN4PQ13434 485 aaPredicted RBP15.32■□□□□ 0.04
CPSF6-204ENST00000547486 IKBKEQ14164 716 aa15.32■□□□□ 0.04
CPSF6-204ENST00000547486 KRT40Q6A162 431 aa15.32■□□□□ 0.04
CPSF6-204ENST00000547486 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.32■□□□□ 0.04
CPSF6-204ENST00000547486 DBF4BQ8NFT6 615 aa15.32■□□□□ 0.04
CPSF6-204ENST00000547486 ARNTL2Q8WYA1 636 aa15.32■□□□□ 0.04
CPSF6-204ENST00000547486 GPRASP2Q96D09 838 aa15.32■□□□□ 0.04
CPSF6-204ENST00000547486 PKD2L1Q9P0L9 805 aa15.32■□□□□ 0.04
CPSF6-204ENST00000547486 MTCH2Q9Y6C9 303 aa15.32■□□□□ 0.04
CPSF6-204ENST00000547486 REV3LO60673 3130 aa15.32■□□□□ 0.04
CPSF6-204ENST00000547486 TANC1Q9C0D5 1861 aa15.31■□□□□ 0.04
CPSF6-204ENST00000547486 SPDYE3A6NKU9 549 aa15.31■□□□□ 0.04
CPSF6-204ENST00000547486 ZBTB43O43298 467 aa15.31■□□□□ 0.04
CPSF6-204ENST00000547486 POU3F3P20264 500 aaPredicted RBP15.31■□□□□ 0.04
CPSF6-204ENST00000547486 TCF7P36402 384 aaPredicted RBP15.31■□□□□ 0.04
CPSF6-204ENST00000547486 RTN1Q16799 776 aa15.31■□□□□ 0.04
CPSF6-204ENST00000547486 MICALL1Q8N3F8 863 aa15.31■□□□□ 0.04
CPSF6-204ENST00000547486 GIMAP8Q8ND71 665 aaPredicted RBP15.31■□□□□ 0.04
CPSF6-204ENST00000547486 CYP2W1Q8TAV3 490 aa15.31■□□□□ 0.04
CPSF6-204ENST00000547486 KCNB2Q92953 911 aa15.31■□□□□ 0.04
CPSF6-204ENST00000547486 PGBD1Q96JS3 809 aa15.31■□□□□ 0.04
CPSF6-204ENST00000547486 ZBED2Q9BTP6 218 aa15.31■□□□□ 0.04
CPSF6-204ENST00000547486 JADE2Q9NQC1 790 aa15.31■□□□□ 0.04
CPSF6-204ENST00000547486 RBM28Q9NW13 759 aaKnown RBP15.31■□□□□ 0.04
CPSF6-204ENST00000547486 CUL9Q8IWT3 2517 aa15.31■□□□□ 0.04
CPSF6-204ENST00000547486 KLF18A0A0U1RQI7 1052 aa15.3■□□□□ 0.04
CPSF6-204ENST00000547486 STXBP3O00186 592 aa15.3■□□□□ 0.04
CPSF6-204ENST00000547486 GJB5O95377 273 aa15.3■□□□□ 0.04
CPSF6-204ENST00000547486 CTSHP09668 335 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms