RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 RESP18Q5W5W9 173 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 IQSEC1Q6DN90 963 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 B3GNT9Q6UX72 402 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 EMID1Q96A84 441 aaPredicted RBP18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 CCDC34Q96HJ3 373 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 CCSER1Q9C0I3 900 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 GDPD2Q9HCC8 539 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 VAV3Q9UKW4 847 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 CEP350Q5VT06 3117 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 MYH9P35579 1960 aaKnown RBP18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 PRPF40AO75400 957 aaKnown RBP18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 SNAI1O95863 264 aaPredicted RBP18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 SPIRE1Q08AE8 756 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 SEMA3FQ13275 785 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 ACVR2BQ13705 512 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 CCDC62Q6P9F0 684 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 METTL7BQ6UX53 244 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 OTOP1Q7RTM1 612 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 SLAIN1Q8ND83 568 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 ARHGAP39Q9C0H5 1083 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 LRWD1Q9UFC0 647 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 USP25Q9UHP3 1055 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 DDX41Q9UJV9 622 aaKnown RBP18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 Q9Y3F1 56 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 WDR64B1ANS9 1081 aa18.03■□□□□ 0.48
PRPF40A-212ENST00000545856 DHX15O43143 795 aaKnown RBP18.03■□□□□ 0.48
PRPF40A-212ENST00000545856 DKC1O60832 514 aaKnown RBP eCLIP18.03■□□□□ 0.48
PRPF40A-212ENST00000545856 HMGCRP04035 888 aa18.03■□□□□ 0.48
PRPF40A-212ENST00000545856 UBA7P41226 1012 aa18.03■□□□□ 0.48
PRPF40A-212ENST00000545856 KRT79Q5XKE5 535 aa18.03■□□□□ 0.48
PRPF40A-212ENST00000545856 CCDC73Q6ZRK6 1079 aa18.03■□□□□ 0.48
PRPF40A-212ENST00000545856 NT5C3AQ9H0P0 336 aa18.03■□□□□ 0.48
PRPF40A-212ENST00000545856 JPH1Q9HDC5 661 aaPredicted RBP18.03■□□□□ 0.48
PRPF40A-212ENST00000545856 CCDC39Q9UFE4 941 aa18.03■□□□□ 0.48
PRPF40A-212ENST00000545856 DOCK5Q9H7D0 1870 aa18.02■□□□□ 0.48
PRPF40A-212ENST00000545856 UBA1P22314 1058 aaKnown RBP18.02■□□□□ 0.47
PRPF40A-212ENST00000545856 TECP42680 631 aa18.02■□□□□ 0.47
PRPF40A-212ENST00000545856 ITGB3BPQ13352 177 aaPredicted RBP18.02■□□□□ 0.47
PRPF40A-212ENST00000545856 DUSP28Q4G0W2 176 aa18.02■□□□□ 0.47
PRPF40A-212ENST00000545856 TAPT1Q6NXT6 567 aa18.02■□□□□ 0.47
PRPF40A-212ENST00000545856 SEPT14Q6ZU15 432 aa18.02■□□□□ 0.47
PRPF40A-212ENST00000545856 FBXO16Q8IX29 292 aaPredicted RBP18.02■□□□□ 0.47
PRPF40A-212ENST00000545856 RAET1EQ8TD07 263 aa18.02■□□□□ 0.47
PRPF40A-212ENST00000545856 CHAMP1Q96JM3 812 aa18.02■□□□□ 0.47
PRPF40A-212ENST00000545856 CSRNP2Q9H175 543 aa18.02■□□□□ 0.47
PRPF40A-212ENST00000545856 CUEDC2Q9H467 287 aa18.02■□□□□ 0.47
PRPF40A-212ENST00000545856 MAGEF1Q9HAY2 307 aa18.02■□□□□ 0.47
PRPF40A-212ENST00000545856 SLC9A2Q9UBY0 812 aa18.02■□□□□ 0.47
PRPF40A-212ENST00000545856 FAM160A1Q05DH4 1040 aa18.01■□□□□ 0.47
PRPF40A-212ENST00000545856 LAMC2Q13753 1193 aa18.01■□□□□ 0.47
PRPF40A-212ENST00000545856 EPHA7Q15375 998 aa18.01■□□□□ 0.47
PRPF40A-212ENST00000545856 NFKBIBQ15653 356 aa18.01■□□□□ 0.47
PRPF40A-212ENST00000545856 HYIQ5T013 277 aa18.01■□□□□ 0.47
PRPF40A-212ENST00000545856 SHC4Q6S5L8 630 aa18.01■□□□□ 0.47
PRPF40A-212ENST00000545856 CALML4Q96GE6 196 aa18.01■□□□□ 0.47
PRPF40A-212ENST00000545856 POLR3CQ9BUI4 534 aaPredicted RBP18.01■□□□□ 0.47
PRPF40A-212ENST00000545856 TUFT1Q9NNX1 390 aa18.01■□□□□ 0.47
PRPF40A-212ENST00000545856 HPSEQ9Y251 543 aa18.01■□□□□ 0.47
PRPF40A-212ENST00000545856 GH1P01241 217 aa18■□□□□ 0.47
PRPF40A-212ENST00000545856 TXNP10599 105 aaKnown RBP18■□□□□ 0.47
PRPF40A-212ENST00000545856 AKR1A1P14550 325 aa18■□□□□ 0.47
PRPF40A-212ENST00000545856 RPA1P27694 616 aa18■□□□□ 0.47
PRPF40A-212ENST00000545856 CTCFP49711 727 aaPredicted RBP18■□□□□ 0.47
PRPF40A-212ENST00000545856 IL17AQ16552 155 aa18■□□□□ 0.47
PRPF40A-212ENST00000545856 ELOA2Q8IYF1 753 aaPredicted RBP18■□□□□ 0.47
PRPF40A-212ENST00000545856 TRIB2Q92519 343 aa18■□□□□ 0.47
PRPF40A-212ENST00000545856 TIGD1Q96MW7 591 aa18■□□□□ 0.47
PRPF40A-212ENST00000545856 FLRT1Q9NZU1 646 aa18■□□□□ 0.47
PRPF40A-212ENST00000545856 FAM184BQ9ULE4 1060 aa18■□□□□ 0.47
PRPF40A-212ENST00000545856 GABRQQ9UN88 632 aa18■□□□□ 0.47
PRPF40A-212ENST00000545856 ADCY3O60266 1144 aa17.99■□□□□ 0.47
PRPF40A-212ENST00000545856 MSCO60682 206 aa17.99■□□□□ 0.47
PRPF40A-212ENST00000545856 FARP2O94887 1054 aaPredicted RBP17.99■□□□□ 0.47
PRPF40A-212ENST00000545856 ZNF865P0CJ78 1059 aaPredicted RBP17.99■□□□□ 0.47
PRPF40A-212ENST00000545856 CYBAP13498 195 aa17.99■□□□□ 0.47
PRPF40A-212ENST00000545856 PKN2Q16513 984 aaKnown RBP17.99■□□□□ 0.47
PRPF40A-212ENST00000545856 CELF3Q5SZQ8 465 aaKnown RBP17.99■□□□□ 0.47
PRPF40A-212ENST00000545856 MAP3K21Q5TCX8 1036 aa17.99■□□□□ 0.47
PRPF40A-212ENST00000545856 FSIP1Q8NA03 581 aa17.99■□□□□ 0.47
PRPF40A-212ENST00000545856 SYMPKQ92797 1274 aaKnown RBP17.99■□□□□ 0.47
PRPF40A-212ENST00000545856 CLIC6Q96NY7 704 aa17.99■□□□□ 0.47
PRPF40A-212ENST00000545856 DDX19AQ9NUU7 478 aaKnown RBP17.99■□□□□ 0.47
PRPF40A-212ENST00000545856 STK17AQ9UEE5 414 aa17.99■□□□□ 0.47
PRPF40A-212ENST00000545856 ZHX1Q9UKY1 873 aaPredicted RBP17.99■□□□□ 0.47
PRPF40A-212ENST00000545856 PCDHA10Q9Y5I2 948 aa17.99■□□□□ 0.47
PRPF40A-212ENST00000545856 POTEMA6NI47 508 aa17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 ATP9AO75110 1047 aa17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 ATG7O95352 703 aa17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 LYPLA2O95372 231 aa17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 GGPS1O95749 300 aa17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 PSAPP07602 524 aa17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 CCL14Q16627 93 aa17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 KLHL40Q2TBA0 621 aa17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 BRDTQ58F21 947 aaPredicted RBP17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 KANK3Q6NY19 840 aa17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 MIS18BP1Q6P0N0 1132 aa17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 MIER3Q7Z3K6 550 aa17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 CABP7Q86V35 215 aa17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 DHX37Q8IY37 1157 aaKnown RBP17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 IQUBQ8NA54 791 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms