RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 CCDC85CA6NKD9 419 aa16.39■□□□□ 0.21
TNFRSF1A-216ENST00000543995 NOP56O00567 594 aaKnown RBP16.39■□□□□ 0.21
TNFRSF1A-216ENST00000543995 FARP2O94887 1054 aaPredicted RBP16.39■□□□□ 0.21
TNFRSF1A-216ENST00000543995 BAG4O95429 457 aaKnown RBP16.39■□□□□ 0.21
TNFRSF1A-216ENST00000543995 GJA8P48165 433 aa16.39■□□□□ 0.21
TNFRSF1A-216ENST00000543995 ARHGAP1Q07960 439 aa16.39■□□□□ 0.21
TNFRSF1A-216ENST00000543995 ORC2Q13416 577 aaPredicted RBP16.39■□□□□ 0.21
TNFRSF1A-216ENST00000543995 CALCRLQ16602 461 aa16.39■□□□□ 0.21
TNFRSF1A-216ENST00000543995 BRDTQ58F21 947 aaPredicted RBP16.39■□□□□ 0.21
TNFRSF1A-216ENST00000543995 GNASQ5JWF2 1037 aa16.39■□□□□ 0.21
TNFRSF1A-216ENST00000543995 METTL7BQ6UX53 244 aa16.39■□□□□ 0.21
TNFRSF1A-216ENST00000543995 ARRDC4Q8NCT1 418 aa16.39■□□□□ 0.21
TNFRSF1A-216ENST00000543995 BCAS3Q9H6U6 928 aa16.39■□□□□ 0.21
TNFRSF1A-216ENST00000543995 JPH1Q9HDC5 661 aaPredicted RBP16.39■□□□□ 0.21
TNFRSF1A-216ENST00000543995 TBC1D22BQ9NU19 505 aa16.39■□□□□ 0.21
TNFRSF1A-216ENST00000543995 PCDHB6Q9Y5E3 794 aa16.39■□□□□ 0.21
TNFRSF1A-216ENST00000543995 MYH15Q9Y2K3 1946 aa16.39■□□□□ 0.21
TNFRSF1A-216ENST00000543995 GAS7O60861 476 aa16.38■□□□□ 0.21
TNFRSF1A-216ENST00000543995 CPT1AP50416 773 aa16.38■□□□□ 0.21
TNFRSF1A-216ENST00000543995 IRX5P78411 483 aaPredicted RBP16.38■□□□□ 0.21
TNFRSF1A-216ENST00000543995 BEX3Q00994 111 aa16.38■□□□□ 0.21
TNFRSF1A-216ENST00000543995 ITGB3BPQ13352 177 aaPredicted RBP16.38■□□□□ 0.21
TNFRSF1A-216ENST00000543995 FSCN1Q16658 493 aaKnown RBP16.38■□□□□ 0.21
TNFRSF1A-216ENST00000543995 LRCH2Q5VUJ6 765 aa16.38■□□□□ 0.21
TNFRSF1A-216ENST00000543995 FAM173BQ6P4H8 233 aa16.38■□□□□ 0.21
TNFRSF1A-216ENST00000543995 AFG1LQ8WV93 481 aa16.38■□□□□ 0.21
TNFRSF1A-216ENST00000543995 GJA10Q969M2 543 aa16.38■□□□□ 0.21
TNFRSF1A-216ENST00000543995 IPO9Q96P70 1041 aaKnown RBP16.38■□□□□ 0.21
TNFRSF1A-216ENST00000543995 TEKT3Q9BXF9 490 aa16.38■□□□□ 0.21
TNFRSF1A-216ENST00000543995 CRISPLD2Q9H0B8 497 aa16.38■□□□□ 0.21
TNFRSF1A-216ENST00000543995 UPF3AQ9H1J1 476 aaKnown RBP16.38■□□□□ 0.21
TNFRSF1A-216ENST00000543995 OGDHLQ9ULD0 1010 aa16.38■□□□□ 0.21
TNFRSF1A-216ENST00000543995 NFASCO94856 1347 aa16.37■□□□□ 0.21
TNFRSF1A-216ENST00000543995 MYADML2A6NDP7 307 aa16.37■□□□□ 0.21
TNFRSF1A-216ENST00000543995 TBX3O15119 743 aa16.37■□□□□ 0.21
TNFRSF1A-216ENST00000543995 ADAMTS4O75173 837 aa16.37■□□□□ 0.21
TNFRSF1A-216ENST00000543995 LRRC41Q15345 812 aa16.37■□□□□ 0.21
TNFRSF1A-216ENST00000543995 FOXD4L6Q3SYB3 417 aaPredicted RBP16.37■□□□□ 0.21
TNFRSF1A-216ENST00000543995 FOXD4L3Q6VB84 417 aaPredicted RBP16.37■□□□□ 0.21
TNFRSF1A-216ENST00000543995 SLFN12Q8IYM2 578 aa16.37■□□□□ 0.21
TNFRSF1A-216ENST00000543995 ETNPPLQ8TBG4 499 aa16.37■□□□□ 0.21
TNFRSF1A-216ENST00000543995 SLC5A5Q92911 643 aa16.37■□□□□ 0.21
TNFRSF1A-216ENST00000543995 EMID1Q96A84 441 aaPredicted RBP16.37■□□□□ 0.21
TNFRSF1A-216ENST00000543995 FAM20AQ96MK3 541 aa16.37■□□□□ 0.21
TNFRSF1A-216ENST00000543995 KCNMB3Q9NPA1 279 aa16.37■□□□□ 0.21
TNFRSF1A-216ENST00000543995 SLC9A2Q9UBY0 812 aa16.37■□□□□ 0.21
TNFRSF1A-216ENST00000543995 POTEFA5A3E0 1075 aa16.36■□□□□ 0.21
TNFRSF1A-216ENST00000543995 KBTBD13C9JR72 458 aa16.36■□□□□ 0.21
TNFRSF1A-216ENST00000543995 ZEB2O60315 1214 aa16.36■□□□□ 0.21
TNFRSF1A-216ENST00000543995 BRD1O95696 1058 aa16.36■□□□□ 0.21
TNFRSF1A-216ENST00000543995 NUCB2P80303 420 aa16.36■□□□□ 0.21
TNFRSF1A-216ENST00000543995 HSDL1Q3SXM5 330 aa16.36■□□□□ 0.21
TNFRSF1A-216ENST00000543995 PPTC7Q8NI37 304 aa16.36■□□□□ 0.21
TNFRSF1A-216ENST00000543995 RIT2Q99578 217 aa16.36■□□□□ 0.21
TNFRSF1A-216ENST00000543995 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.36■□□□□ 0.21
TNFRSF1A-216ENST00000543995 DHX15O43143 795 aaKnown RBP16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 MMP3P08254 477 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 OR52Z1P0C646 297 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 CEBPZQ03701 1054 aaKnown RBP16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 PTGDRQ13258 359 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 DGKDQ16760 1214 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 PCSK9Q8NBP7 692 aaKnown RBP16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 KLHDC9Q8NEP7 349 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 HAS1Q92839 578 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 TMEM60Q9H2L4 133 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 ZDHHC9Q9Y397 364 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 SAMM50Q9Y512 469 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 A6NJR5 290 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 DNM1LO00429 736 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 CTAGE5O15320 804 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 CHMP2AO43633 222 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 PSMD10O75832 226 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 MYL3P08590 195 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 CAPN2P17655 700 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 CST5P28325 142 aaPredicted RBP16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 DDIT3P35638 169 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 TXKP42681 527 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 SOX10P56693 466 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 NKX3-2P78367 333 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 KRT76Q01546 638 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 SF3A1Q15459 793 aaKnown RBP16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 KCNA10Q16322 511 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 ZNF396Q96N95 335 aaPredicted RBP16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 TTC12Q9H892 705 aaPredicted RBP16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 PCDHA12Q9UN75 941 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 CEP131Q9UPN4 1083 aa16.35■□□□□ 0.21
TNFRSF1A-216ENST00000543995 LAD1O00515 517 aa16.34■□□□□ 0.21
TNFRSF1A-216ENST00000543995 PPFIA4O75335 1185 aa16.34■□□□□ 0.21
TNFRSF1A-216ENST00000543995 EN2P19622 333 aaPredicted RBP16.34■□□□□ 0.21
TNFRSF1A-216ENST00000543995 TCF7P36402 384 aaPredicted RBP16.34■□□□□ 0.21
TNFRSF1A-216ENST00000543995 ACTR2P61160 394 aa16.34■□□□□ 0.21
TNFRSF1A-216ENST00000543995 ZNF746Q6NUN9 644 aaPredicted RBP16.34■□□□□ 0.21
TNFRSF1A-216ENST00000543995 ANKLE1Q8NAG6 615 aa16.34■□□□□ 0.21
TNFRSF1A-216ENST00000543995 SEPT1Q8WYJ6 367 aa16.34■□□□□ 0.21
TNFRSF1A-216ENST00000543995 MTMR9Q96QG7 549 aa16.34■□□□□ 0.21
TNFRSF1A-216ENST00000543995 GPR20Q99678 358 aa16.34■□□□□ 0.21
TNFRSF1A-216ENST00000543995 POLR3EQ9NVU0 708 aa16.34■□□□□ 0.21
TNFRSF1A-216ENST00000543995 TELO2Q9Y4R8 837 aa16.34■□□□□ 0.21
TNFRSF1A-216ENST00000543995 ATP6V1DQ9Y5K8 247 aa16.34■□□□□ 0.21
TNFRSF1A-216ENST00000543995 CLIC4Q9Y696 253 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms