RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 VDRP11473 427 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 SYKP43405 635 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 VSNL1P62760 191 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 MDM2Q00987 491 aaPredicted RBP8.83□□□□□ -1
PDLIM5-221ENST00000542407 USP17L2Q6R6M4 530 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 SRGAP1Q7Z6B7 1085 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 C3orf20Q8ND61 904 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 GMLQ99445 158 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 CPVLQ9H3G5 476 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 KLHL42Q9P2K6 505 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 TMEM98Q9Y2Y6 226 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 TRIM75PA6NK02 468 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 KRT38O76015 456 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 PARP1P09874 1014 aaKnown RBP8.83□□□□□ -1
PDLIM5-221ENST00000542407 CA8P35219 290 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 NLRP5P59047 1200 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 KIF4BQ2VIQ3 1234 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 RTKN2Q8IZC4 609 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 VTI1AQ96AJ9 217 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 SPOCK3Q9BQ16 436 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 ACBD3Q9H3P7 528 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 RIOX1Q9H6W3 641 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 TUBE1Q9UJT0 475 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 KCNH3Q9ULD8 1083 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 PCDHA4Q9UN74 947 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 CEP131Q9UPN4 1083 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 FAM169AQ9Y6X4 670 aa8.83□□□□□ -1
PDLIM5-221ENST00000542407 BAZ2BQ9UIF8 2168 aaKnown RBP8.83□□□□□ -1
PDLIM5-221ENST00000542407 LRRIQ3A6PVS8 624 aaPredicted RBP8.82□□□□□ -1
PDLIM5-221ENST00000542407 EBAG9O00559 213 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 MYO1BO43795 1136 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 CYP11B2P19099 503 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 ATP2C1P98194 919 aaPredicted RBP8.82□□□□□ -1
PDLIM5-221ENST00000542407 PTK7Q13308 1070 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 CRYMQ14894 314 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 SHROOM1Q2M3G4 852 aaPredicted RBP8.82□□□□□ -1
PDLIM5-221ENST00000542407 SPECC1Q5M775 1068 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 BLIDQ8IZY5 108 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 RIN2Q8WYP3 895 aaPredicted RBP8.82□□□□□ -1
PDLIM5-221ENST00000542407 KIFC2Q96AC6 838 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 FAM81BQ96LP2 452 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 SGIP1Q9BQI5 828 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 LRRC27Q9C0I9 530 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 CSRNP2Q9H175 543 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 DIS3Q9Y2L1 958 aaKnown RBP8.82□□□□□ -1
PDLIM5-221ENST00000542407 IVNS1ABPQ9Y6Y0 642 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 MYH4Q9Y623 1939 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 HLA-DOAP06340 250 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 VIL1P09327 827 aaKnown RBP8.82□□□□□ -1
PDLIM5-221ENST00000542407 TRAPPC10P48553 1259 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 NCAPHQ15003 741 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 FXNQ16595 210 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 TTC38Q5R3I4 469 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 TATDN1Q6P1N9 297 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 PIK3AP1Q6ZUJ8 805 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 USP49Q70CQ1 688 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 LRRC47Q8N1G4 583 aaKnown RBP8.82□□□□□ -1
PDLIM5-221ENST00000542407 C4orf32Q8N8J7 132 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 PARD3BQ8TEW8 1205 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 FAM107BQ9H098 131 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 DHX36Q9H2U1 1008 aaKnown RBP8.82□□□□□ -1
PDLIM5-221ENST00000542407 FANCLQ9NW38 375 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 MKS1Q9NXB0 559 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 PCDHA6Q9UN73 950 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 PCDHA8Q9Y5H6 950 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 FER1L6Q2WGJ9 1857 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 ARFGEF1Q9Y6D6 1849 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.82□□□□□ -1
PDLIM5-221ENST00000542407 A0A087X0B3 334 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 GOLGA6L9A6NEM1 432 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 TTLL1O95922 423 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 CALML3P27482 149 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 INPP5BP32019 993 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 NLRP12P59046 1061 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 ATP2B2Q01814 1243 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 USP4Q13107 963 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 MTF1Q14872 753 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 IL17AQ16552 155 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 FILIP1LQ4L180 1135 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 ARMC9Q7Z3E5 817 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 SPATA21Q7Z572 469 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 ANKRD13BQ86YJ7 626 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 HNRNPLLQ8WVV9 542 aaKnown RBP8.82□□□□□ -1
PDLIM5-221ENST00000542407 PRMT6Q96LA8 375 aaPredicted RBP8.82□□□□□ -1
PDLIM5-221ENST00000542407 ZMYND12Q9H0C1 365 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 CAPN7Q9Y6W3 813 aa8.82□□□□□ -1
PDLIM5-221ENST00000542407 POM121CA8CG34 1229 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 ACTN4O43707 911 aaKnown RBP8.81□□□□□ -1
PDLIM5-221ENST00000542407 MAGEA10P43363 369 aaPredicted RBP8.81□□□□□ -1
PDLIM5-221ENST00000542407 RAB27AP51159 221 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 TCP10Q12799 353 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 NEDD9Q14511 834 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 ZNF569Q5MCW4 686 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 SMYD5Q6GMV2 418 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 GALNT17Q6IS24 598 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 RSBN1LQ6PCB5 846 aaPredicted RBP8.81□□□□□ -1
PDLIM5-221ENST00000542407 FOXP4Q8IVH2 680 aaPredicted RBP8.81□□□□□ -1
PDLIM5-221ENST00000542407 RASGRP4Q8TDF6 673 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 RMDN2Q96LZ7 410 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 BPIFA3Q9BQP9 254 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 115.5 ms