RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 MRPL4Q9BYD3 311 aaKnown RBP9.07□□□□□ -0.96
YBX3-210ENST00000540975 NCOA5Q9HCD5 579 aaKnown RBP9.07□□□□□ -0.96
YBX3-210ENST00000540975 DTLQ9NZJ0 730 aa9.07□□□□□ -0.96
YBX3-210ENST00000540975 ADAMTS20P59510 1910 aa9.06□□□□□ -0.96
YBX3-210ENST00000540975 TCRBV5S4A2TA0A5A2 114 aa9.06□□□□□ -0.96
YBX3-210ENST00000540975 LRG1P02750 347 aa9.06□□□□□ -0.96
YBX3-210ENST00000540975 NKX3-2P78367 333 aa9.06□□□□□ -0.96
YBX3-210ENST00000540975 VWA3BQ502W6 1294 aa9.06□□□□□ -0.96
YBX3-210ENST00000540975 C16orf59Q7L2K0 433 aa9.06□□□□□ -0.96
YBX3-210ENST00000540975 SAPCD2Q86UD0 394 aa9.06□□□□□ -0.96
YBX3-210ENST00000540975 TP53I13Q8NBR0 393 aaPredicted RBP9.06□□□□□ -0.96
YBX3-210ENST00000540975 ZNF526Q8TF50 670 aaPredicted RBP9.06□□□□□ -0.96
YBX3-210ENST00000540975 SCLYQ96I15 445 aa9.06□□□□□ -0.96
YBX3-210ENST00000540975 C11orf84Q9BUA3 381 aaPredicted RBP9.06□□□□□ -0.96
YBX3-210ENST00000540975 PDGFDQ9GZP0 370 aaPredicted RBP9.06□□□□□ -0.96
YBX3-210ENST00000540975 NUB1Q9Y5A7 615 aa9.06□□□□□ -0.96
YBX3-210ENST00000540975 PYGMP11217 842 aa9.05□□□□□ -0.96
YBX3-210ENST00000540975 GRIN1Q05586 938 aa9.05□□□□□ -0.96
YBX3-210ENST00000540975 TUSC3Q13454 348 aa9.05□□□□□ -0.96
YBX3-210ENST00000540975 TEPPQ6URK8 271 aa9.05□□□□□ -0.96
YBX3-210ENST00000540975 STK32CQ86UX6 486 aa9.05□□□□□ -0.96
YBX3-210ENST00000540975 OSTM1Q86WC4 334 aa9.05□□□□□ -0.96
YBX3-210ENST00000540975 ZC3H7AQ8IWR0 971 aaKnown RBP9.05□□□□□ -0.96
YBX3-210ENST00000540975 ZBTB8AQ96BR9 441 aa9.05□□□□□ -0.96
YBX3-210ENST00000540975 CATSPERZQ9NTU4 200 aa9.05□□□□□ -0.96
YBX3-210ENST00000540975 SPATA6Q9NWH7 488 aaPredicted RBP9.05□□□□□ -0.96
YBX3-210ENST00000540975 USP35Q9P2H5 1018 aa9.05□□□□□ -0.96
YBX3-210ENST00000540975 ARID1BQ8NFD5 2236 aaPredicted RBP9.04□□□□□ -0.96
YBX3-210ENST00000540975 PLD2O14939 933 aa9.04□□□□□ -0.96
YBX3-210ENST00000540975 GSTA4O15217 222 aa9.04□□□□□ -0.96
YBX3-210ENST00000540975 LTFP02788 710 aa9.04□□□□□ -0.96
YBX3-210ENST00000540975 DLX2Q07687 328 aaPredicted RBP9.04□□□□□ -0.96
YBX3-210ENST00000540975 SMAD4Q13485 552 aaKnown RBP9.04□□□□□ -0.96
YBX3-210ENST00000540975 GPR19Q15760 415 aa9.04□□□□□ -0.96
YBX3-210ENST00000540975 FBLN7Q53RD9 439 aa9.04□□□□□ -0.96
YBX3-210ENST00000540975 ARHGAP36Q6ZRI8 547 aa9.04□□□□□ -0.96
YBX3-210ENST00000540975 ADGRG2Q8IZP9 1017 aa9.04□□□□□ -0.96
YBX3-210ENST00000540975 MARCH10Q8NA82 808 aaPredicted RBP9.04□□□□□ -0.96
YBX3-210ENST00000540975 KYQ8NBH2 561 aa9.04□□□□□ -0.96
YBX3-210ENST00000540975 SH3RF2Q8TEC5 729 aa9.04□□□□□ -0.96
YBX3-210ENST00000540975 RNPC3Q96LT9 517 aaKnown RBP9.04□□□□□ -0.96
YBX3-210ENST00000540975 HSPBP1Q9NZL4 362 aa9.04□□□□□ -0.96
YBX3-210ENST00000540975 SFMBT1Q9UHJ3 866 aa9.04□□□□□ -0.96
YBX3-210ENST00000540975 TELO2Q9Y4R8 837 aa9.04□□□□□ -0.96
YBX3-210ENST00000540975 SH3D21A4FU49 640 aa9.03□□□□□ -0.96
YBX3-210ENST00000540975 RASGRP1O95267 797 aa9.03□□□□□ -0.96
YBX3-210ENST00000540975 RAPGEF3O95398 923 aa9.03□□□□□ -0.96
YBX3-210ENST00000540975 PDE6AP16499 860 aa9.03□□□□□ -0.96
YBX3-210ENST00000540975 BMP7P18075 431 aa9.03□□□□□ -0.96
YBX3-210ENST00000540975 EPHA5P54756 1037 aa9.03□□□□□ -0.96
YBX3-210ENST00000540975 ST5P78524 1137 aa9.03□□□□□ -0.96
YBX3-210ENST00000540975 FGD2Q7Z6J4 655 aa9.03□□□□□ -0.96
YBX3-210ENST00000540975 TTLL11Q8NHH1 800 aa9.03□□□□□ -0.96
YBX3-210ENST00000540975 CLUHP3Q96NS8 147 aa9.03□□□□□ -0.96
YBX3-210ENST00000540975 TRIM39Q9HCM9 518 aa9.03□□□□□ -0.96
YBX3-210ENST00000540975 TMEM260Q9NX78 707 aa9.03□□□□□ -0.96
YBX3-210ENST00000540975 CBLCQ9ULV8 474 aa9.03□□□□□ -0.96
YBX3-210ENST00000540975 TRIM13O60858 407 aa9.02□□□□□ -0.97
YBX3-210ENST00000540975 AMY2AP04746 511 aa9.02□□□□□ -0.97
YBX3-210ENST00000540975 CKMP06732 381 aa9.02□□□□□ -0.97
YBX3-210ENST00000540975 AMY2BP19961 511 aa9.02□□□□□ -0.97
YBX3-210ENST00000540975 ITGA1P56199 1179 aa9.02□□□□□ -0.97
YBX3-210ENST00000540975 FAM47CQ5HY64 1035 aa9.02□□□□□ -0.97
YBX3-210ENST00000540975 KCTD1Q719H9 257 aa9.02□□□□□ -0.97
YBX3-210ENST00000540975 BRAPQ7Z569 592 aa9.02□□□□□ -0.97
YBX3-210ENST00000540975 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.02□□□□□ -0.97
YBX3-210ENST00000540975 KRTAP9-9Q9BYP9 154 aa9.02□□□□□ -0.97
YBX3-210ENST00000540975 KRTAP9-4Q9BYQ2 154 aa9.02□□□□□ -0.97
YBX3-210ENST00000540975 WASF3Q9UPY6 502 aa9.02□□□□□ -0.97
YBX3-210ENST00000540975 A0A1B0GTL3 188 aa9.01□□□□□ -0.97
YBX3-210ENST00000540975 ESYT3A0FGR9 886 aa9.01□□□□□ -0.97
YBX3-210ENST00000540975 CCDC66A2RUB6 948 aa9.01□□□□□ -0.97
YBX3-210ENST00000540975 PPP1R12AO14974 1030 aaPredicted RBP9.01□□□□□ -0.97
YBX3-210ENST00000540975 APPP05067 770 aa9.01□□□□□ -0.97
YBX3-210ENST00000540975 KCNA6P17658 529 aa9.01□□□□□ -0.97
YBX3-210ENST00000540975 DNM2P50570 870 aa9.01□□□□□ -0.97
YBX3-210ENST00000540975 LACTBP83111 547 aaPredicted RBP9.01□□□□□ -0.97
YBX3-210ENST00000540975 CRY1Q16526 586 aa9.01□□□□□ -0.97
YBX3-210ENST00000540975 PAN2Q504Q3 1202 aaKnown RBP9.01□□□□□ -0.97
YBX3-210ENST00000540975 FNDC3BQ53EP0 1204 aaKnown RBP9.01□□□□□ -0.97
YBX3-210ENST00000540975 TTLL7Q6ZT98 887 aa9.01□□□□□ -0.97
YBX3-210ENST00000540975 TTLL6Q8N841 843 aa9.01□□□□□ -0.97
YBX3-210ENST00000540975 CD244Q9BZW8 370 aa9.01□□□□□ -0.97
YBX3-210ENST00000540975 TCRBV16S1A1N1A0A5B0 115 aa9□□□□□ -0.97
YBX3-210ENST00000540975 BTBD11A6QL63 1104 aa9□□□□□ -0.97
YBX3-210ENST00000540975 SMARCA5O60264 1052 aaPredicted RBP9□□□□□ -0.97
YBX3-210ENST00000540975 FAHP16930 419 aa9□□□□□ -0.97
YBX3-210ENST00000540975 JAM2P57087 298 aa9□□□□□ -0.97
YBX3-210ENST00000540975 ADAM9Q13443 819 aa9□□□□□ -0.97
YBX3-210ENST00000540975 LIPIQ6XZB0 460 aa9□□□□□ -0.97
YBX3-210ENST00000540975 NLGN4XQ8N0W4 816 aa9□□□□□ -0.97
YBX3-210ENST00000540975 KCNC2Q96PR1 638 aa9□□□□□ -0.97
YBX3-210ENST00000540975 ACOT7O00154 380 aa8.99□□□□□ -0.97
YBX3-210ENST00000540975 ASMTLO95671 621 aa8.99□□□□□ -0.97
YBX3-210ENST00000540975 THBS2P35442 1172 aa8.99□□□□□ -0.97
YBX3-210ENST00000540975 SLURP1P55000 103 aa8.99□□□□□ -0.97
YBX3-210ENST00000540975 PROSER1Q86XN7 944 aa8.99□□□□□ -0.97
YBX3-210ENST00000540975 PTRH1Q86Y79 214 aaKnown RBP8.99□□□□□ -0.97
YBX3-210ENST00000540975 PARD6AQ9NPB6 346 aa8.99□□□□□ -0.97
YBX3-210ENST00000540975 RBPJLQ9UBG7 517 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms