RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 FAM76AQ8TAV0 307 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 MMP19Q99542 508 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 NXF1Q9UBU9 619 aaKnown RBP15.39■□□□□ 0.05
USP3-204ENST00000540797 MAN1B1Q9UKM7 699 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 SAR1BQ9Y6B6 198 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 FRMPD1Q5SYB0 1578 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 PNPLA7Q6ZV29 1317 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 RIMS1Q86UR5 1692 aaKnown RBP15.39■□□□□ 0.05
USP3-204ENST00000540797 CPS1P31327 1500 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 CEP170BQ9Y4F5 1589 aaPredicted RBP15.39■□□□□ 0.05
USP3-204ENST00000540797 ARHGEF37A1IGU5 675 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 PSMC4P43686 418 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 NFX1Q12986 1120 aaKnown RBP15.39■□□□□ 0.05
USP3-204ENST00000540797 ALCAMQ13740 583 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 LGSNQ5TDP6 509 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 NEDD1Q8NHV4 660 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 TBC1D22BQ9NU19 505 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 BZW2Q9Y6E2 419 aaKnown RBP15.39■□□□□ 0.05
USP3-204ENST00000540797 IQSEC2Q5JU85 1478 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 DDIT3P35638 169 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 PAK2Q13177 524 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 MAN2A1Q16706 1144 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 PTPROQ16827 1216 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 CATSPER4Q7RTX7 472 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.39■□□□□ 0.05
USP3-204ENST00000540797 HAUS1Q96CS2 278 aa15.39■□□□□ 0.05
USP3-204ENST00000540797 ITKQ08881 620 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 MYO1EQ12965 1108 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 CCDC94Q9BW85 323 aaPredicted RBP15.38■□□□□ 0.05
USP3-204ENST00000540797 SAMD15Q9P1V8 674 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 CSPG5O95196 566 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 FDX1P10109 184 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 FCER1AP12319 257 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 RCAN1P53805 252 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 ARPP19P56211 112 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 QRICH1Q2TAL8 776 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 STYK1Q6J9G0 422 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 SLC16A10Q8TF71 515 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 FAM81BQ96LP2 452 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 ACAD9Q9H845 621 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 RPF1Q9H9Y2 349 aaKnown RBP15.38■□□□□ 0.05
USP3-204ENST00000540797 STK36Q9NRP7 1315 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 WDR64B1ANS9 1081 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 GIPC1O14908 333 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 ORC4O43929 436 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 LMNB1P20700 586 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 STAT3P40763 770 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 PRELPP51888 382 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 NKX1-1Q15270 411 aaPredicted RBP15.38■□□□□ 0.05
USP3-204ENST00000540797 ADGRF4Q8IZF3 695 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 SMC1BQ8NDV3 1235 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 FAM149B1Q96BN6 582 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 MRFAP1L1Q96HT8 127 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 RAB17Q9H0T7 212 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 ELP3Q9H9T3 547 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 HACL1Q9UJ83 578 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 DPEP1P16444 411 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 CAPN2P17655 700 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 HPDP32754 393 aaPredicted RBP15.38■□□□□ 0.05
USP3-204ENST00000540797 HMGCS2P54868 508 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 PEX3P56589 373 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 SARNPP82979 210 aaKnown RBP15.38■□□□□ 0.05
USP3-204ENST00000540797 TTLL4Q14679 1199 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 SURF1Q15526 300 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 NME8Q8N427 588 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 PIGOQ8TEQ8 1089 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 MSTO1Q9BUK6 570 aa15.38■□□□□ 0.05
USP3-204ENST00000540797 RPAP3Q9H6T3 665 aaPredicted RBP15.38■□□□□ 0.05
USP3-204ENST00000540797 ZBTB12Q9Y330 459 aaPredicted RBP15.38■□□□□ 0.05
USP3-204ENST00000540797 CSF1RP07333 972 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 DPCR1Q3MIW9 517 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 PAGE5Q96GU1 130 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 A6NJR5 290 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 NEDD9Q14511 834 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 C12orf60Q5U649 245 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 KRT76Q01546 638 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 C7orf31Q8N865 590 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 OSBPL5Q9H0X9 879 aaPredicted RBP15.37■□□□□ 0.05
USP3-204ENST00000540797 RSPH14Q9UHP6 348 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 HYOU1Q9Y4L1 999 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 ZC3H13Q5T200 1668 aaKnown RBP15.37■□□□□ 0.05
USP3-204ENST00000540797 TBC1D8O95759 1140 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 ARHGAP4P98171 946 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 SLFN12LQ6IEE8 588 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 VPS37BQ9H9H4 285 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 ATP6V0A4Q9HBG4 840 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 GJB4Q9NTQ9 266 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 SEPT10Q9P0V9 454 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 CCNE1P24864 410 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 SLC12A2P55011 1212 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 SETDB1Q15047 1291 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 RSBN1LQ6PCB5 846 aaPredicted RBP15.37■□□□□ 0.05
USP3-204ENST00000540797 NBPF11Q86T75 865 aa15.37■□□□□ 0.05
USP3-204ENST00000540797 USP42Q9H9J4 1324 aaKnown RBP15.36■□□□□ 0.05
USP3-204ENST00000540797 KRIT1O00522 736 aa15.36■□□□□ 0.05
USP3-204ENST00000540797 CASP14P31944 242 aa15.36■□□□□ 0.05
USP3-204ENST00000540797 COPB2P35606 906 aa15.36■□□□□ 0.05
USP3-204ENST00000540797 CROCCP2Q86T23 111 aa15.36■□□□□ 0.05
USP3-204ENST00000540797 BANK1Q8NDB2 785 aa15.36■□□□□ 0.05
USP3-204ENST00000540797 HAUS4Q9H6D7 363 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms