RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 MRPS9P82933 396 aaKnown RBP15.72■□□□□ 0.11
SS18-204ENST00000539244 GNPTABQ3T906 1256 aa15.72■□□□□ 0.11
SS18-204ENST00000539244 METTL7BQ6UX53 244 aa15.72■□□□□ 0.11
SS18-204ENST00000539244 FCHSD1Q86WN1 690 aa15.72■□□□□ 0.11
SS18-204ENST00000539244 ATP6V0A1Q93050 837 aa15.72■□□□□ 0.11
SS18-204ENST00000539244 LRFN3Q9BTN0 628 aa15.72■□□□□ 0.11
SS18-204ENST00000539244 USP26Q9BXU7 913 aa15.72■□□□□ 0.11
SS18-204ENST00000539244 UBE2ZQ9H832 354 aaPredicted RBP15.72■□□□□ 0.11
SS18-204ENST00000539244 SORBS3O60504 671 aa15.71■□□□□ 0.11
SS18-204ENST00000539244 CYP21A2P08686 494 aa15.71■□□□□ 0.11
SS18-204ENST00000539244 GSPT1P15170 499 aaKnown RBP15.71■□□□□ 0.11
SS18-204ENST00000539244 NEDD9Q14511 834 aa15.71■□□□□ 0.11
SS18-204ENST00000539244 LEXMQ3ZCV2 418 aa15.71■□□□□ 0.11
SS18-204ENST00000539244 FAM117BQ6P1L5 589 aa15.71■□□□□ 0.11
SS18-204ENST00000539244 MYOCDQ8IZQ8 938 aa15.71■□□□□ 0.11
SS18-204ENST00000539244 FBXO22Q8NEZ5 403 aa15.71■□□□□ 0.11
SS18-204ENST00000539244 SAMD11Q96NU1 681 aa15.71■□□□□ 0.11
SS18-204ENST00000539244 C17orf80Q9BSJ5 609 aa15.71■□□□□ 0.11
SS18-204ENST00000539244 RNPEPQ9H4A4 650 aa15.71■□□□□ 0.11
SS18-204ENST00000539244 BCAS3Q9H6U6 928 aa15.71■□□□□ 0.11
SS18-204ENST00000539244 SENP2Q9HC62 589 aa15.71■□□□□ 0.11
SS18-204ENST00000539244 U3KPZ7 1027 aaPredicted RBP15.71■□□□□ 0.11
SS18-204ENST00000539244 ERICH2A1L162 156 aa15.7■□□□□ 0.1
SS18-204ENST00000539244 SPATA31C2B4DYI2 1134 aa15.7■□□□□ 0.1
SS18-204ENST00000539244 IFIT3O14879 490 aaKnown RBP15.7■□□□□ 0.1
SS18-204ENST00000539244 TREHO43280 583 aa15.7■□□□□ 0.1
SS18-204ENST00000539244 ADAM17P78536 824 aa15.7■□□□□ 0.1
SS18-204ENST00000539244 SEMA3FQ13275 785 aa15.7■□□□□ 0.1
SS18-204ENST00000539244 EXOC6Q8TAG9 804 aa15.7■□□□□ 0.1
SS18-204ENST00000539244 SEPT8Q92599 483 aa15.7■□□□□ 0.1
SS18-204ENST00000539244 TOP1MTQ969P6 601 aa15.7■□□□□ 0.1
SS18-204ENST00000539244 MRPL38Q96DV4 380 aaKnown RBP15.7■□□□□ 0.1
SS18-204ENST00000539244 FAM122AQ96E09 287 aa15.7■□□□□ 0.1
SS18-204ENST00000539244 ZFP91Q96JP5 570 aaPredicted RBP15.7■□□□□ 0.1
SS18-204ENST00000539244 DOCK5Q9H7D0 1870 aa15.69■□□□□ 0.1
SS18-204ENST00000539244 RBAK-RBAKDNI3L0D1 243 aa15.69■□□□□ 0.1
SS18-204ENST00000539244 NOP56O00567 594 aaKnown RBP15.69■□□□□ 0.1
SS18-204ENST00000539244 FIBPO43427 364 aa15.69■□□□□ 0.1
SS18-204ENST00000539244 GPR37L1O60883 481 aa15.69■□□□□ 0.1
SS18-204ENST00000539244 GNAT1P11488 350 aa15.69■□□□□ 0.1
SS18-204ENST00000539244 WTAPQ15007 396 aa15.69■□□□□ 0.1
SS18-204ENST00000539244 SART3Q15020 963 aaKnown RBP15.69■□□□□ 0.1
SS18-204ENST00000539244 TMEM31Q5JXX7 168 aa15.69■□□□□ 0.1
SS18-204ENST00000539244 TTC22Q5TAA0 569 aa15.69■□□□□ 0.1
SS18-204ENST00000539244 NCOA7Q8NI08 942 aa15.69■□□□□ 0.1
SS18-204ENST00000539244 KHSRPQ92945 711 aaKnown RBP eCLIP15.69■□□□□ 0.13e-7■■■■□ 20.1
SS18-204ENST00000539244 GPR20Q99678 358 aa15.69■□□□□ 0.1
SS18-204ENST00000539244 SENP7Q9BQF6 1050 aa15.69■□□□□ 0.1
SS18-204ENST00000539244 CD320Q9NPF0 282 aa15.69■□□□□ 0.1
SS18-204ENST00000539244 C11orf16Q9NQ32 467 aa15.69■□□□□ 0.1
SS18-204ENST00000539244 RALGAPA2Q2PPJ7 1873 aa15.68■□□□□ 0.1
SS18-204ENST00000539244 NLRC5Q86WI3 1866 aa15.68■□□□□ 0.1
SS18-204ENST00000539244 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.68■□□□□ 0.1
SS18-204ENST00000539244 PI4K2BG5E9Z4 385 aa15.68■□□□□ 0.1
SS18-204ENST00000539244 H3BNC9 293 aa15.68■□□□□ 0.1
SS18-204ENST00000539244 PIK3CDO00329 1044 aa15.68■□□□□ 0.1
SS18-204ENST00000539244 PDE4AP27815 886 aa15.68■□□□□ 0.1
SS18-204ENST00000539244 PTH1RQ03431 593 aa15.68■□□□□ 0.1
SS18-204ENST00000539244 PTPROQ16827 1216 aa15.68■□□□□ 0.1
SS18-204ENST00000539244 EPC2Q52LR7 807 aa15.68■□□□□ 0.1
SS18-204ENST00000539244 FAM26DQ5JW98 314 aa15.68■□□□□ 0.1
SS18-204ENST00000539244 XRRA1Q6P2D8 792 aa15.68■□□□□ 0.1
SS18-204ENST00000539244 CYFIP1Q7L576 1253 aa15.68■□□□□ 0.1
SS18-204ENST00000539244 RALYLQ86SE5 291 aaKnown RBP15.68■□□□□ 0.1
SS18-204ENST00000539244 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.68■□□□□ 0.1
SS18-204ENST00000539244 RUFY2Q8WXA3 655 aa15.68■□□□□ 0.1
SS18-204ENST00000539244 APBB2Q92870 758 aa15.68■□□□□ 0.1
SS18-204ENST00000539244 MAP3K14Q99558 947 aa15.68■□□□□ 0.1
SS18-204ENST00000539244 OSBPL7Q9BZF2 842 aa15.68■□□□□ 0.1
SS18-204ENST00000539244 ZNF215Q9UL58 517 aaPredicted RBP15.68■□□□□ 0.1
SS18-204ENST00000539244 KAT6AQ92794 2004 aa15.68■□□□□ 0.1
SS18-204ENST00000539244 E7EWF7 191 aa15.67■□□□□ 0.1
SS18-204ENST00000539244 KCNA5P22460 613 aa15.67■□□□□ 0.1
SS18-204ENST00000539244 CHMLP26374 656 aa15.67■□□□□ 0.1
SS18-204ENST00000539244 SMARCA1P28370 1054 aa15.67■□□□□ 0.1
SS18-204ENST00000539244 COL19A1Q14993 1142 aa15.67■□□□□ 0.1
SS18-204ENST00000539244 TIGD5Q53EQ6 642 aa15.67■□□□□ 0.1
SS18-204ENST00000539244 PCNX4Q63HM2 1172 aa15.67■□□□□ 0.1
SS18-204ENST00000539244 CATIPQ7Z7H3 387 aa15.67■□□□□ 0.1
SS18-204ENST00000539244 RPAINQ86UA6 219 aa15.67■□□□□ 0.1
SS18-204ENST00000539244 FAM178BQ8IXR5 827 aa15.67■□□□□ 0.1
SS18-204ENST00000539244 NEK9Q8TD19 979 aa15.67■□□□□ 0.1
SS18-204ENST00000539244 IGDCC4Q8TDY8 1250 aa15.67■□□□□ 0.1
SS18-204ENST00000539244 YME1L1Q96TA2 773 aa15.67■□□□□ 0.1
SS18-204ENST00000539244 SPZ1Q9BXG8 430 aa15.67■□□□□ 0.1
SS18-204ENST00000539244 SETD4Q9NVD3 440 aa15.67■□□□□ 0.1
SS18-204ENST00000539244 HCN4Q9Y3Q4 1203 aa15.67■□□□□ 0.1
SS18-204ENST00000539244 TAF6LQ9Y6J9 622 aa15.67■□□□□ 0.1
SS18-204ENST00000539244 MEIS2O14770 477 aa15.66■□□□□ 0.1
SS18-204ENST00000539244 CTSHP09668 335 aa15.66■□□□□ 0.1
SS18-204ENST00000539244 ANTXR2P58335 489 aa15.66■□□□□ 0.1
SS18-204ENST00000539244 PUS10Q3MIT2 529 aaKnown RBP15.66■□□□□ 0.1
SS18-204ENST00000539244 TRIM50Q86XT4 487 aa15.66■□□□□ 0.1
SS18-204ENST00000539244 TMEM192Q8IY95 271 aa15.66■□□□□ 0.1
SS18-204ENST00000539244 LMBR1Q8WVP7 490 aa15.66■□□□□ 0.1
SS18-204ENST00000539244 RTEL1Q9NZ71 1219 aa15.66■□□□□ 0.1
SS18-204ENST00000539244 NRCAMQ92823 1304 aa15.66■□□□□ 0.1
SS18-204ENST00000539244 GRXCR2A6NFK2 248 aa15.65■□□□□ 0.1
SS18-204ENST00000539244 SGSM2O43147 1006 aa15.65■□□□□ 0.1
SS18-204ENST00000539244 DDAH1O94760 285 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms