RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 DUSP10Q9Y6W6 482 aa13.55□□□□□ -0.24
USP3-203ENST00000538686 TMEM94Q12767 1356 aa13.55□□□□□ -0.24
USP3-203ENST00000538686 TJP3O95049 919 aa13.55□□□□□ -0.24
USP3-203ENST00000538686 GJB6O95452 261 aa13.55□□□□□ -0.24
USP3-203ENST00000538686 HARSP12081 509 aaKnown RBP13.55□□□□□ -0.24
USP3-203ENST00000538686 PTDSS1P48651 473 aaKnown RBP13.55□□□□□ -0.24
USP3-203ENST00000538686 TMEM62Q0P6H9 643 aa13.55□□□□□ -0.24
USP3-203ENST00000538686 DPYDQ12882 1025 aa13.55□□□□□ -0.24
USP3-203ENST00000538686 TAF7Q15545 349 aaPredicted RBP13.55□□□□□ -0.24
USP3-203ENST00000538686 PI16Q6UXB8 463 aa13.55□□□□□ -0.24
USP3-203ENST00000538686 SLF2Q8IX21 1173 aa13.55□□□□□ -0.24
USP3-203ENST00000538686 GRAMD1CQ8IYS0 662 aa13.55□□□□□ -0.24
USP3-203ENST00000538686 KIF2BQ8N4N8 673 aa13.55□□□□□ -0.24
USP3-203ENST00000538686 ATP11CQ8NB49 1132 aa13.55□□□□□ -0.24
USP3-203ENST00000538686 LENG1Q96BZ8 264 aaPredicted RBP13.55□□□□□ -0.24
USP3-203ENST00000538686 TLR10Q9BXR5 811 aa13.55□□□□□ -0.24
USP3-203ENST00000538686 DCLRE1BQ9H816 532 aa13.55□□□□□ -0.24
USP3-203ENST00000538686 NKX1-2Q9UD57 310 aaPredicted RBP13.55□□□□□ -0.24
USP3-203ENST00000538686 HPS5Q9UPZ3 1129 aa13.55□□□□□ -0.24
USP3-203ENST00000538686 MYH7BA7E2Y1 1941 aa13.54□□□□□ -0.24
USP3-203ENST00000538686 UNC5CO95185 931 aa13.54□□□□□ -0.24
USP3-203ENST00000538686 MOCS3O95396 460 aa13.54□□□□□ -0.24
USP3-203ENST00000538686 TROVE2P10155 538 aaKnown RBP eCLIP13.54□□□□□ -0.24
USP3-203ENST00000538686 SAFBQ15424 915 aaKnown RBP eCLIP13.54□□□□□ -0.24
USP3-203ENST00000538686 MAEAQ7L5Y9 396 aa13.54□□□□□ -0.24
USP3-203ENST00000538686 CCDC65Q8IXS2 484 aa13.54□□□□□ -0.24
USP3-203ENST00000538686 OR2W6PQ8NHA6 318 aa13.54□□□□□ -0.24
USP3-203ENST00000538686 ERMNQ8TAM6 284 aa13.54□□□□□ -0.24
USP3-203ENST00000538686 PGM2Q96G03 612 aa13.54□□□□□ -0.24
USP3-203ENST00000538686 NUDCD1Q96RS6 583 aa13.54□□□□□ -0.24
USP3-203ENST00000538686 PYM1Q9BRP8 204 aaKnown RBP13.54□□□□□ -0.24
USP3-203ENST00000538686 TTYH3Q9C0H2 523 aa13.54□□□□□ -0.24
USP3-203ENST00000538686 RHBDL2Q9NX52 303 aa13.54□□□□□ -0.24
USP3-203ENST00000538686 FBXL5Q9UKA1 691 aa13.54□□□□□ -0.24
USP3-203ENST00000538686 PA2G4Q9UQ80 394 aaKnown RBP13.54□□□□□ -0.24
USP3-203ENST00000538686 PALLDQ8WX93 1383 aa13.54□□□□□ -0.24
USP3-203ENST00000538686 ZSCAN5CA6NGD5 496 aaPredicted RBP13.54□□□□□ -0.24
USP3-203ENST00000538686 TRIM21P19474 475 aaKnown RBP13.54□□□□□ -0.24
USP3-203ENST00000538686 MYBPC2Q14324 1141 aa13.54□□□□□ -0.24
USP3-203ENST00000538686 EXOC3L1Q86VI1 746 aa13.54□□□□□ -0.24
USP3-203ENST00000538686 ZNF507Q8TCN5 953 aa13.54□□□□□ -0.24
USP3-203ENST00000538686 WDR60Q8WVS4 1066 aa13.54□□□□□ -0.24
USP3-203ENST00000538686 INPP5DQ92835 1189 aa13.54□□□□□ -0.24
USP3-203ENST00000538686 LRMDAQ9H2I8 198 aa13.54□□□□□ -0.24
USP3-203ENST00000538686 C9orf78Q9NZ63 289 aaPredicted RBP13.54□□□□□ -0.24
USP3-203ENST00000538686 DDX60Q8IY21 1712 aaKnown RBP13.53□□□□□ -0.24
USP3-203ENST00000538686 CCDC169A6NNP5 214 aa13.53□□□□□ -0.24
USP3-203ENST00000538686 BHMG1C9JSJ3 638 aaPredicted RBP13.53□□□□□ -0.24
USP3-203ENST00000538686 SMAPO00193 183 aa13.53□□□□□ -0.24
USP3-203ENST00000538686 RAD51CO43502 376 aa13.53□□□□□ -0.24
USP3-203ENST00000538686 ASLP04424 464 aa13.53□□□□□ -0.24
USP3-203ENST00000538686 HNRNPCP07910 306 aaKnown RBP eCLIP13.53□□□□□ -0.243e-6■■□□□ 11.7
USP3-203ENST00000538686 HOXB7P09629 217 aa13.53□□□□□ -0.24
USP3-203ENST00000538686 ECHS1P30084 290 aa13.53□□□□□ -0.24
USP3-203ENST00000538686 HNRNPH3P31942 346 aaKnown RBP13.53□□□□□ -0.24
USP3-203ENST00000538686 CXCR5P32302 372 aa13.53□□□□□ -0.24
USP3-203ENST00000538686 OXCT1P55809 520 aa13.53□□□□□ -0.24
USP3-203ENST00000538686 RCN2Q14257 317 aa13.53□□□□□ -0.24
USP3-203ENST00000538686 TMEM259Q4ZIN3 620 aa13.53□□□□□ -0.24
USP3-203ENST00000538686 NME9Q86XW9 330 aa13.53□□□□□ -0.24
USP3-203ENST00000538686 NOSTRINQ8IVI9 506 aa13.53□□□□□ -0.24
USP3-203ENST00000538686 SDR16C5Q8N3Y7 309 aa13.53□□□□□ -0.24
USP3-203ENST00000538686 GATA6Q92908 595 aa13.53□□□□□ -0.24
USP3-203ENST00000538686 GFM2Q969S9 779 aaKnown RBP13.53□□□□□ -0.24
USP3-203ENST00000538686 PAGE5Q96GU1 130 aa13.53□□□□□ -0.24
USP3-203ENST00000538686 NAP1L3Q99457 506 aaPredicted RBP13.53□□□□□ -0.24
USP3-203ENST00000538686 PPP1R12CQ9BZL4 782 aa13.53□□□□□ -0.24
USP3-203ENST00000538686 TLR7Q9NYK1 1049 aaKnown RBP13.53□□□□□ -0.24
USP3-203ENST00000538686 ZMYND8Q9ULU4 1186 aaPredicted RBP13.53□□□□□ -0.24
USP3-203ENST00000538686 BTBD19C9JJ37 291 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 ECE2O60344 883 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 RAPGEF3O95398 923 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 SRGNP10124 158 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 SMARCA1P28370 1054 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 CD97P48960 835 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 KBTBD3Q8NAB2 608 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 PHC3Q8NDX5 983 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 MDM1Q8TC05 714 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 WASF1Q92558 559 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 NECTIN2Q92692 538 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 CLMNQ96JQ2 1002 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 ARPC5LQ9BPX5 153 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 SELENOSQ9BQE4 189 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.52□□□□□ -0.243e-7■□□□□ 11.3
USP3-203ENST00000538686 MTA3Q9BTC8 594 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 OXCT2Q9BYC2 517 aaPredicted RBP13.52□□□□□ -0.24
USP3-203ENST00000538686 SEC31BQ9NQW1 1179 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 GJB4Q9NTQ9 266 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 SMARCAL1Q9NZC9 954 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 MAGEC2Q9UBF1 373 aaPredicted RBP13.52□□□□□ -0.24
USP3-203ENST00000538686 INTUQ9ULD6 942 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 AKAP12Q02952 1782 aa13.52□□□□□ -0.24
USP3-203ENST00000538686 MON2Q7Z3U7 1717 aa13.52□□□□□ -0.25
USP3-203ENST00000538686 WDR46O15213 610 aaKnown RBP13.52□□□□□ -0.25
USP3-203ENST00000538686 RAD21O60216 631 aa13.52□□□□□ -0.25
USP3-203ENST00000538686 AGTP01019 485 aa13.52□□□□□ -0.25
USP3-203ENST00000538686 RASSF2P50749 326 aa13.52□□□□□ -0.25
USP3-203ENST00000538686 ERVK-9P63128 1117 aa13.52□□□□□ -0.25
USP3-203ENST00000538686 CYP27A1Q02318 531 aa13.52□□□□□ -0.25
USP3-203ENST00000538686 MKRN3Q13064 507 aaKnown RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms