RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 STAM2O75886 525 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 DDAH1O94760 285 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 GJB5O95377 273 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 PLEKHA8P1O95397 391 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 RSPH10BP0C881 870 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 SMIM10L2AP0DMW4 78 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 SMIM10L2BP0DMW5 78 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 BMP1P13497 986 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 RXRAP19793 462 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 SMARCA1P28370 1054 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 HOXC8P31273 242 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 THPOP40225 353 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 IKBKEQ14164 716 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 NEDD9Q14511 834 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 GNPTABQ3T906 1256 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 FAM117BQ6P1L5 589 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 POTEHQ6S545 545 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 CASC1Q6TDU7 716 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 METTL7BQ6UX53 244 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.76□□□□□ -0.85
USP28-203ENST00000537490 CYFIP1Q7L576 1253 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 RAB11FIP4Q86YS3 637 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 CMTR1Q8N1G2 835 aaKnown RBP9.76□□□□□ -0.85
USP28-203ENST00000537490 SRBD1Q8N5C6 995 aaKnown RBP9.76□□□□□ -0.85
USP28-203ENST00000537490 CTCFLQ8NI51 663 aaPredicted RBP9.76□□□□□ -0.85
USP28-203ENST00000537490 SMARCC2Q8TAQ2 1214 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 ATP6V0A1Q93050 837 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 RRP36Q96EU6 259 aaKnown RBP9.76□□□□□ -0.85
USP28-203ENST00000537490 NECAB3Q96P71 396 aaPredicted RBP9.76□□□□□ -0.85
USP28-203ENST00000537490 UHRF1Q96T88 793 aaPredicted RBP9.76□□□□□ -0.85
USP28-203ENST00000537490 GPR20Q99678 358 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 SPZ1Q9BXG8 430 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 TSPYL2Q9H2G4 693 aaPredicted RBP9.76□□□□□ -0.85
USP28-203ENST00000537490 PRRC2BQ5JSZ5 2229 aaKnown RBP9.76□□□□□ -0.85
USP28-203ENST00000537490 TANC1Q9C0D5 1861 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 NOP56O00567 594 aaKnown RBP9.75□□□□□ -0.85
USP28-203ENST00000537490 SLC27A2O14975 620 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 EFCAB14O75071 495 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 KIF5BP33176 963 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 MCM5P33992 734 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 GNAQP50148 359 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 KCNQ1P51787 676 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 MKRN4PQ13434 485 aaPredicted RBP9.75□□□□□ -0.85
USP28-203ENST00000537490 NECTIN1Q15223 517 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 UTP14CQ5TAP6 766 aaKnown RBP9.75□□□□□ -0.85
USP28-203ENST00000537490 PCNX4Q63HM2 1172 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 NFXL1Q6ZNB6 911 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 TRIM50Q86XT4 487 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 CUL5Q93034 780 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 TMEM87BQ96K49 555 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 RAD9AQ99638 391 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 LZTS2Q9BRK4 669 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 ESYT1Q9BSJ8 1104 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 MTA3Q9BTC8 594 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 USP26Q9BXU7 913 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 LRRC2Q9BYS8 371 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 SUGCTQ9HAC7 445 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 SETD4Q9NVD3 440 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 MYH6P13533 1939 aa9.75□□□□□ -0.85
USP28-203ENST00000537490 hCG_1642624A0A1W2PR95 340 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 LINC01553A4QN01 128 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 CCDC69A6NI79 296 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 PIK3CDO00329 1044 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 ATP9AO75110 1047 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 CTSHP09668 335 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 LIFRP42702 1097 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 ERVK-21P61565 698 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 ADAM17P78536 824 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 SP4Q02446 784 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 PLEKHG4Q58EX7 1191 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 CREB3L3Q68CJ9 461 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 SKAP1Q86WV1 359 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 TMTC2Q8N394 836 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 CCDC82Q8N4S0 544 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 IL27Q8NEV9 243 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 GDPD5Q8WTR4 605 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 SENP7Q9BQF6 1050 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 SEC63Q9UGP8 760 aaKnown RBP9.74□□□□□ -0.85
USP28-203ENST00000537490 MTUS1Q9ULD2 1270 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 MYH7BA7E2Y1 1941 aa9.74□□□□□ -0.85
USP28-203ENST00000537490 KCNA2P16389 499 aa9.73□□□□□ -0.85
USP28-203ENST00000537490 ITGB5P18084 799 aa9.73□□□□□ -0.85
USP28-203ENST00000537490 UBE2SQ16763 222 aa9.73□□□□□ -0.85
USP28-203ENST00000537490 AAK1Q2M2I8 961 aa9.73□□□□□ -0.85
USP28-203ENST00000537490 XRRA1Q6P2D8 792 aa9.73□□□□□ -0.85
USP28-203ENST00000537490 NLRX1Q86UT6 975 aa9.73□□□□□ -0.85
USP28-203ENST00000537490 MYOCDQ8IZQ8 938 aa9.73□□□□□ -0.85
USP28-203ENST00000537490 TGS1Q96RS0 853 aaKnown RBP9.73□□□□□ -0.85
USP28-203ENST00000537490 PSTPIP2Q9H939 334 aa9.73□□□□□ -0.85
USP28-203ENST00000537490 LMCD1Q9NZU5 365 aa9.73□□□□□ -0.85
USP28-203ENST00000537490 COG5Q9UP83 839 aa9.73□□□□□ -0.85
USP28-203ENST00000537490 EMSYQ7Z589 1322 aa9.73□□□□□ -0.85
USP28-203ENST00000537490 PTPRSQ13332 1948 aa9.72□□□□□ -0.85
USP28-203ENST00000537490 EYSQ5T1H1 3165 aa9.72□□□□□ -0.85
USP28-203ENST00000537490 CHD9Q3L8U1 2897 aa9.72□□□□□ -0.85
USP28-203ENST00000537490 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.72□□□□□ -0.85
USP28-203ENST00000537490 GSTTP1A0A1W2PQM5 241 aa9.72□□□□□ -0.85
USP28-203ENST00000537490 AMHP03971 560 aa9.72□□□□□ -0.85
USP28-203ENST00000537490 CALM1P0DP23 149 aa9.72□□□□□ -0.85
USP28-203ENST00000537490 CALM2P0DP24 149 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms