RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 XIRP2A4UGR9 3374 aa20.51■□□□□ 0.87
PCF11-206ENST00000533018 PTPRSQ13332 1948 aa20.51■□□□□ 0.87
PCF11-206ENST00000533018 SPATA31C2B4DYI2 1134 aa20.51■□□□□ 0.87
PCF11-206ENST00000533018 GTPBP6O43824 516 aaPredicted RBP20.51■□□□□ 0.87
PCF11-206ENST00000533018 LGALS2P05162 132 aa20.51■□□□□ 0.87
PCF11-206ENST00000533018 IKBKEQ14164 716 aa20.51■□□□□ 0.87
PCF11-206ENST00000533018 HIC1Q14526 733 aa20.51■□□□□ 0.87
PCF11-206ENST00000533018 SKIV2LQ15477 1246 aaKnown RBP20.51■□□□□ 0.87
PCF11-206ENST00000533018 METTL7BQ6UX53 244 aa20.51■□□□□ 0.87
PCF11-206ENST00000533018 NLRX1Q86UT6 975 aa20.51■□□□□ 0.87
PCF11-206ENST00000533018 ATXN2LQ8WWM7 1075 aaKnown RBP20.51■□□□□ 0.87
PCF11-206ENST00000533018 INPP4AQ96PE3 977 aaPredicted RBP20.51■□□□□ 0.87
PCF11-206ENST00000533018 USP26Q9BXU7 913 aa20.51■□□□□ 0.87
PCF11-206ENST00000533018 PSTPIP2Q9H939 334 aa20.51■□□□□ 0.87
PCF11-206ENST00000533018 PRRC2BQ5JSZ5 2229 aaKnown RBP20.51■□□□□ 0.87
PCF11-206ENST00000533018 KAT6AQ92794 2004 aa20.51■□□□□ 0.87
PCF11-206ENST00000533018 hCG_1642624A0A1W2PR95 340 aa20.5■□□□□ 0.87
PCF11-206ENST00000533018 MEIS2O14770 477 aa20.5■□□□□ 0.87
PCF11-206ENST00000533018 CXCL10P02778 98 aa20.5■□□□□ 0.87
PCF11-206ENST00000533018 SMIM10L2AP0DMW4 78 aa20.5■□□□□ 0.87
PCF11-206ENST00000533018 SMIM10L2BP0DMW5 78 aa20.5■□□□□ 0.87
PCF11-206ENST00000533018 ICAM3P32942 547 aa20.5■□□□□ 0.87
PCF11-206ENST00000533018 LIFRP42702 1097 aa20.5■□□□□ 0.87
PCF11-206ENST00000533018 DEFB103AP81534 67 aa20.5■□□□□ 0.87
PCF11-206ENST00000533018 TAP1Q03518 808 aa20.5■□□□□ 0.87
PCF11-206ENST00000533018 COL9A3Q14050 684 aaPredicted RBP20.5■□□□□ 0.87
PCF11-206ENST00000533018 NECTIN1Q15223 517 aa20.5■□□□□ 0.87
PCF11-206ENST00000533018 UTP14CQ5TAP6 766 aaKnown RBP20.5■□□□□ 0.87
PCF11-206ENST00000533018 PCNX4Q63HM2 1172 aa20.5■□□□□ 0.87
PCF11-206ENST00000533018 SYNE3Q6ZMZ3 975 aa20.5■□□□□ 0.87
PCF11-206ENST00000533018 IL27Q8NEV9 243 aa20.5■□□□□ 0.87
PCF11-206ENST00000533018 MUC3AQ02505 3323 aa20.5■□□□□ 0.87
PCF11-206ENST00000533018 ABHD14A-ACY1A0A1B0GW23 586 aa20.49■□□□□ 0.87
PCF11-206ENST00000533018 RSPH10B2B2RC85 870 aa20.49■□□□□ 0.87
PCF11-206ENST00000533018 PIK3CDO00329 1044 aa20.49■□□□□ 0.87
PCF11-206ENST00000533018 RSPH10BP0C881 870 aa20.49■□□□□ 0.87
PCF11-206ENST00000533018 SEMA3FQ13275 785 aa20.49■□□□□ 0.87
PCF11-206ENST00000533018 TRIM71Q2Q1W2 868 aaKnown RBP20.49■□□□□ 0.87
PCF11-206ENST00000533018 RNF20Q5VTR2 975 aa20.49■□□□□ 0.87
PCF11-206ENST00000533018 FAM117BQ6P1L5 589 aa20.49■□□□□ 0.87
PCF11-206ENST00000533018 XRRA1Q6P2D8 792 aa20.49■□□□□ 0.87
PCF11-206ENST00000533018 SERINC5Q86VE9 423 aa20.49■□□□□ 0.87
PCF11-206ENST00000533018 SKAP1Q86WV1 359 aa20.49■□□□□ 0.87
PCF11-206ENST00000533018 MICU3Q86XE3 530 aa20.49■□□□□ 0.87
PCF11-206ENST00000533018 FANCBQ8NB91 859 aa20.49■□□□□ 0.87
PCF11-206ENST00000533018 GPR20Q99678 358 aa20.49■□□□□ 0.87
PCF11-206ENST00000533018 RBAK-RBAKDNI3L0D1 243 aa20.48■□□□□ 0.87
PCF11-206ENST00000533018 TREHO43280 583 aa20.48■□□□□ 0.87
PCF11-206ENST00000533018 EFCAB14O75071 495 aa20.48■□□□□ 0.87
PCF11-206ENST00000533018 ARHGEF15O94989 841 aa20.48■□□□□ 0.87
PCF11-206ENST00000533018 MRPS5P82675 430 aaKnown RBP20.48■□□□□ 0.87
PCF11-206ENST00000533018 TCTN1Q2MV58 587 aa20.48■□□□□ 0.87
PCF11-206ENST00000533018 ASB2Q96Q27 587 aa20.48■□□□□ 0.87
PCF11-206ENST00000533018 RNPEPQ9H4A4 650 aa20.48■□□□□ 0.87
PCF11-206ENST00000533018 ZNF215Q9UL58 517 aaPredicted RBP20.48■□□□□ 0.87
PCF11-206ENST00000533018 EMSYQ7Z589 1322 aa20.48■□□□□ 0.87
PCF11-206ENST00000533018 EPOPA6NHQ4 379 aa20.47■□□□□ 0.87
PCF11-206ENST00000533018 SPDYE3A6NKU9 549 aa20.47■□□□□ 0.87
PCF11-206ENST00000533018 LGR5O75473 907 aa20.47■□□□□ 0.87
PCF11-206ENST00000533018 GNAT1P11488 350 aa20.47■□□□□ 0.87
PCF11-206ENST00000533018 MBTPS1Q14703 1052 aa20.47■□□□□ 0.87
PCF11-206ENST00000533018 BMP2KLQ5H9B9 411 aa20.47■□□□□ 0.87
PCF11-206ENST00000533018 TRAF7Q6Q0C0 670 aa20.47■□□□□ 0.87
PCF11-206ENST00000533018 HEATR3Q7Z4Q2 680 aa20.47■□□□□ 0.87
PCF11-206ENST00000533018 TRIM50Q86XT4 487 aa20.47■□□□□ 0.87
PCF11-206ENST00000533018 SETD4Q9NVD3 440 aa20.47■□□□□ 0.87
PCF11-206ENST00000533018 MTCH2Q9Y6C9 303 aa20.47■□□□□ 0.87
PCF11-206ENST00000533018 LCHNA4D1U4 455 aa20.46■□□□□ 0.87
PCF11-206ENST00000533018 CTSHP09668 335 aa20.46■□□□□ 0.87
PCF11-206ENST00000533018 UBE2SQ16763 222 aa20.46■□□□□ 0.87
PCF11-206ENST00000533018 TMTC3Q6ZXV5 915 aa20.46■□□□□ 0.87
PCF11-206ENST00000533018 CENPQQ7L2Z9 268 aaPredicted RBP20.46■□□□□ 0.87
PCF11-206ENST00000533018 GIMAP8Q8ND71 665 aaPredicted RBP20.46■□□□□ 0.87
PCF11-206ENST00000533018 SENP7Q9BQF6 1050 aa20.46■□□□□ 0.87
PCF11-206ENST00000533018 TELO2Q9Y4R8 837 aa20.46■□□□□ 0.87
PCF11-206ENST00000533018 GJB5O95377 273 aa20.45■□□□□ 0.86
PCF11-206ENST00000533018 ARHGAP4P98171 946 aa20.45■□□□□ 0.86
PCF11-206ENST00000533018 KRT40Q6A162 431 aa20.45■□□□□ 0.86
PCF11-206ENST00000533018 DBF4BQ8NFT6 615 aa20.45■□□□□ 0.86
PCF11-206ENST00000533018 CDHR1Q96JP9 859 aa20.45■□□□□ 0.86
PCF11-206ENST00000533018 NEK1Q96PY6 1258 aa20.45■□□□□ 0.86
PCF11-206ENST00000533018 RAD9AQ99638 391 aa20.45■□□□□ 0.86
PCF11-206ENST00000533018 PKD2L1Q9P0L9 805 aa20.45■□□□□ 0.86
PCF11-206ENST00000533018 MTUS1Q9ULD2 1270 aa20.45■□□□□ 0.86
PCF11-206ENST00000533018 AMHP03971 560 aa20.44■□□□□ 0.86
PCF11-206ENST00000533018 TCF7P36402 384 aaPredicted RBP20.44■□□□□ 0.86
PCF11-206ENST00000533018 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.44■□□□□ 0.86
PCF11-206ENST00000533018 SPRED2Q7Z698 418 aa20.44■□□□□ 0.86
PCF11-206ENST00000533018 SGMS1Q86VZ5 419 aa20.44■□□□□ 0.86
PCF11-206ENST00000533018 MYOCDQ8IZQ8 938 aa20.44■□□□□ 0.86
PCF11-206ENST00000533018 GPRASP2Q96D09 838 aa20.44■□□□□ 0.86
PCF11-206ENST00000533018 TCEANC2Q96MN5 208 aa20.44■□□□□ 0.86
PCF11-206ENST00000533018 PCDHA6Q9UN73 950 aa20.44■□□□□ 0.86
PCF11-206ENST00000533018 PCDHA8Q9Y5H6 950 aa20.44■□□□□ 0.86
PCF11-206ENST00000533018 TCF20Q9UGU0 1960 aaKnown RBP20.44■□□□□ 0.86
PCF11-206ENST00000533018 MICAL3Q7RTP6 2002 aa20.44■□□□□ 0.86
PCF11-206ENST00000533018 NCOR1O75376 2440 aa20.44■□□□□ 0.86
PCF11-206ENST00000533018 TNFRSF10AO00220 468 aa20.43■□□□□ 0.86
PCF11-206ENST00000533018 ATP9AO75110 1047 aa20.43■□□□□ 0.86
PCF11-206ENST00000533018 GRB10Q13322 594 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms