RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PSTPIP2Q9H939 334 aa16.96■□□□□ 0.31
VPS28-215ENST00000531924 PIK3CDO00329 1044 aa16.95■□□□□ 0.3
VPS28-215ENST00000531924 LGR5O75473 907 aa16.95■□□□□ 0.3
VPS28-215ENST00000531924 PLEKHA8P1O95397 391 aa16.95■□□□□ 0.3
VPS28-215ENST00000531924 SMIM10L2AP0DMW4 78 aa16.95■□□□□ 0.3
VPS28-215ENST00000531924 SMIM10L2BP0DMW5 78 aa16.95■□□□□ 0.3
VPS28-215ENST00000531924 RXRAP19793 462 aa16.95■□□□□ 0.3
VPS28-215ENST00000531924 LIFRP42702 1097 aa16.95■□□□□ 0.3
VPS28-215ENST00000531924 AAK1Q2M2I8 961 aa16.95■□□□□ 0.3
VPS28-215ENST00000531924 UTP14CQ5TAP6 766 aaKnown RBP16.95■□□□□ 0.3
VPS28-215ENST00000531924 PCNX4Q63HM2 1172 aa16.95■□□□□ 0.3
VPS28-215ENST00000531924 SERINC5Q86VE9 423 aa16.95■□□□□ 0.3
VPS28-215ENST00000531924 CMTR1Q8N1G2 835 aaKnown RBP16.95■□□□□ 0.3
VPS28-215ENST00000531924 CCDC82Q8N4S0 544 aa16.95■□□□□ 0.3
VPS28-215ENST00000531924 SRBD1Q8N5C6 995 aaKnown RBP16.95■□□□□ 0.3
VPS28-215ENST00000531924 SCN5AQ14524 2016 aa16.95■□□□□ 0.3
VPS28-215ENST00000531924 FRMPD4Q14CM0 1322 aa16.95■□□□□ 0.3
VPS28-215ENST00000531924 SPDYE3A6NKU9 549 aa16.94■□□□□ 0.3
VPS28-215ENST00000531924 DEFB103AP81534 67 aa16.94■□□□□ 0.3
VPS28-215ENST00000531924 GPNMBQ14956 572 aa16.94■□□□□ 0.3
VPS28-215ENST00000531924 TRIM71Q2Q1W2 868 aaKnown RBP16.94■□□□□ 0.3
VPS28-215ENST00000531924 FAM117BQ6P1L5 589 aa16.94■□□□□ 0.3
VPS28-215ENST00000531924 TMCO2Q7Z6W1 182 aaPredicted RBP16.94■□□□□ 0.3
VPS28-215ENST00000531924 RAB11FIP4Q86YS3 637 aa16.94■□□□□ 0.3
VPS28-215ENST00000531924 CDHR1Q96JP9 859 aa16.94■□□□□ 0.3
VPS28-215ENST00000531924 RAD9AQ99638 391 aa16.94■□□□□ 0.3
VPS28-215ENST00000531924 GPR20Q99678 358 aa16.94■□□□□ 0.3
VPS28-215ENST00000531924 TANC1Q9C0D5 1861 aa16.93■□□□□ 0.3
VPS28-215ENST00000531924 TNFRSF10AO00220 468 aa16.93■□□□□ 0.3
VPS28-215ENST00000531924 MEIS2O14770 477 aa16.93■□□□□ 0.3
VPS28-215ENST00000531924 AMHP03971 560 aa16.93■□□□□ 0.3
VPS28-215ENST00000531924 HEATR3Q7Z4Q2 680 aa16.93■□□□□ 0.3
VPS28-215ENST00000531924 MICU3Q86XE3 530 aa16.93■□□□□ 0.3
VPS28-215ENST00000531924 FANCBQ8NB91 859 aa16.93■□□□□ 0.3
VPS28-215ENST00000531924 SEPT8Q92599 483 aa16.93■□□□□ 0.3
VPS28-215ENST00000531924 WNT8BQ93098 351 aa16.93■□□□□ 0.3
VPS28-215ENST00000531924 SENP7Q9BQF6 1050 aa16.93■□□□□ 0.3
VPS28-215ENST00000531924 LRRC2Q9BYS8 371 aa16.93■□□□□ 0.3
VPS28-215ENST00000531924 BCAS3Q9H6U6 928 aa16.93■□□□□ 0.3
VPS28-215ENST00000531924 EHMT1Q9H9B1 1298 aa16.93■□□□□ 0.3
VPS28-215ENST00000531924 MTCH2Q9Y6C9 303 aa16.93■□□□□ 0.3
VPS28-215ENST00000531924 CHD7Q9P2D1 2997 aa16.93■□□□□ 0.3
VPS28-215ENST00000531924 GBF1Q92538 1859 aa16.93■□□□□ 0.3
VPS28-215ENST00000531924 MYO9BQ13459 2157 aa16.92■□□□□ 0.3
VPS28-215ENST00000531924 BAZ2BQ9UIF8 2168 aaKnown RBP16.92■□□□□ 0.3
VPS28-215ENST00000531924 hCG_1642624A0A1W2PR95 340 aa16.92■□□□□ 0.3
VPS28-215ENST00000531924 TREHO43280 583 aa16.92■□□□□ 0.3
VPS28-215ENST00000531924 GJB5O95377 273 aa16.92■□□□□ 0.3
VPS28-215ENST00000531924 HIC1Q14526 733 aa16.92■□□□□ 0.3
VPS28-215ENST00000531924 NECTIN1Q15223 517 aa16.92■□□□□ 0.3
VPS28-215ENST00000531924 ADAMTS19Q8TE59 1207 aa16.92■□□□□ 0.3
VPS28-215ENST00000531924 RNPEPQ9H4A4 650 aa16.92■□□□□ 0.3
VPS28-215ENST00000531924 SETD4Q9NVD3 440 aa16.92■□□□□ 0.3
VPS28-215ENST00000531924 MTUS1Q9ULD2 1270 aa16.92■□□□□ 0.3
VPS28-215ENST00000531924 VCANP13611 3396 aa16.92■□□□□ 0.3
VPS28-215ENST00000531924 LCHNA4D1U4 455 aa16.91■□□□□ 0.3
VPS28-215ENST00000531924 EPOPA6NHQ4 379 aa16.91■□□□□ 0.3
VPS28-215ENST00000531924 CAND2O75155 1236 aa16.91■□□□□ 0.3
VPS28-215ENST00000531924 CTSHP09668 335 aa16.91■□□□□ 0.3
VPS28-215ENST00000531924 POU3F3P20264 500 aaPredicted RBP16.91■□□□□ 0.3
VPS28-215ENST00000531924 ARHGAP4P98171 946 aa16.91■□□□□ 0.3
VPS28-215ENST00000531924 SEMA3FQ13275 785 aa16.91■□□□□ 0.3
VPS28-215ENST00000531924 MBTPS1Q14703 1052 aa16.91■□□□□ 0.3
VPS28-215ENST00000531924 BMP2KLQ5H9B9 411 aa16.91■□□□□ 0.3
VPS28-215ENST00000531924 TRAF7Q6Q0C0 670 aa16.91■□□□□ 0.3
VPS28-215ENST00000531924 TMTC3Q6ZXV5 915 aa16.91■□□□□ 0.3
VPS28-215ENST00000531924 CENPQQ7L2Z9 268 aaPredicted RBP16.91■□□□□ 0.3
VPS28-215ENST00000531924 TRIM50Q86XT4 487 aa16.91■□□□□ 0.3
VPS28-215ENST00000531924 MYOCDQ8IZQ8 938 aa16.91■□□□□ 0.3
VPS28-215ENST00000531924 DBF4BQ8NFT6 615 aa16.91■□□□□ 0.3
VPS28-215ENST00000531924 GPRASP2Q96D09 838 aa16.91■□□□□ 0.3
VPS28-215ENST00000531924 NEK1Q96PY6 1258 aa16.91■□□□□ 0.3
VPS28-215ENST00000531924 UHRF1Q96T88 793 aaPredicted RBP16.91■□□□□ 0.3
VPS28-215ENST00000531924 INSL6Q9Y581 213 aa16.91■□□□□ 0.3
VPS28-215ENST00000531924 ARHGEF15O94989 841 aa16.9■□□□□ 0.3
VPS28-215ENST00000531924 FGD1P98174 961 aa16.9■□□□□ 0.3
VPS28-215ENST00000531924 GRB10Q13322 594 aa16.9■□□□□ 0.3
VPS28-215ENST00000531924 MTMR1Q13613 665 aa16.9■□□□□ 0.3
VPS28-215ENST00000531924 UBE2SQ16763 222 aa16.9■□□□□ 0.3
VPS28-215ENST00000531924 TCTN1Q2MV58 587 aa16.9■□□□□ 0.3
VPS28-215ENST00000531924 GLG1Q92896 1179 aa16.9■□□□□ 0.3
VPS28-215ENST00000531924 TGS1Q96RS0 853 aaKnown RBP16.9■□□□□ 0.3
VPS28-215ENST00000531924 RBM28Q9NW13 759 aaKnown RBP16.9■□□□□ 0.3
VPS28-215ENST00000531924 PKD2L1Q9P0L9 805 aa16.9■□□□□ 0.3
VPS28-215ENST00000531924 MYH7BA7E2Y1 1941 aa16.9■□□□□ 0.3
VPS28-215ENST00000531924 TCF7P36402 384 aaPredicted RBP16.89■□□□□ 0.29
VPS28-215ENST00000531924 PLEKHG4Q58EX7 1191 aa16.89■□□□□ 0.29
VPS28-215ENST00000531924 KRT40Q6A162 431 aa16.89■□□□□ 0.29
VPS28-215ENST00000531924 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.89■□□□□ 0.29
VPS28-215ENST00000531924 RSPH3Q86UC2 560 aa16.89■□□□□ 0.29
VPS28-215ENST00000531924 SGMS1Q86VZ5 419 aa16.89■□□□□ 0.29
VPS28-215ENST00000531924 SEPT1Q8WYJ6 367 aa16.89■□□□□ 0.29
VPS28-215ENST00000531924 NAP1L2Q9ULW6 460 aaPredicted RBP16.89■□□□□ 0.29
VPS28-215ENST00000531924 PCDHA6Q9UN73 950 aa16.89■□□□□ 0.29
VPS28-215ENST00000531924 COG5Q9UP83 839 aa16.89■□□□□ 0.29
VPS28-215ENST00000531924 PCDHA8Q9Y5H6 950 aa16.89■□□□□ 0.29
VPS28-215ENST00000531924 TRIP12Q14669 1992 aaPredicted RBP16.89■□□□□ 0.29
VPS28-215ENST00000531924 NRCAMQ92823 1304 aa16.89■□□□□ 0.29
VPS28-215ENST00000531924 TTC28Q96AY4 2481 aa16.88■□□□□ 0.29
VPS28-215ENST00000531924 MAFGO15525 162 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms