RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 C17orf102A2RUQ5 167 aa13.11□□□□□ -0.31
VPS28-214ENST00000531032 SPATA31C2B4DYI2 1134 aa13.11□□□□□ -0.31
VPS28-214ENST00000531032 PIK3CDO00329 1044 aa13.11□□□□□ -0.31
VPS28-214ENST00000531032 LGR5O75473 907 aa13.11□□□□□ -0.31
VPS28-214ENST00000531032 SMARCA1P28370 1054 aa13.11□□□□□ -0.31
VPS28-214ENST00000531032 NEDD9Q14511 834 aa13.11□□□□□ -0.31
VPS28-214ENST00000531032 SKIV2LQ15477 1246 aaKnown RBP13.11□□□□□ -0.31
VPS28-214ENST00000531032 ZNF654Q8IZM8 581 aa13.11□□□□□ -0.31
VPS28-214ENST00000531032 RAD9AQ99638 391 aa13.11□□□□□ -0.31
VPS28-214ENST00000531032 ZBED2Q9BTP6 218 aa13.11□□□□□ -0.31
VPS28-214ENST00000531032 USP26Q9BXU7 913 aa13.11□□□□□ -0.31
VPS28-214ENST00000531032 COG5Q9UP83 839 aa13.11□□□□□ -0.31
VPS28-214ENST00000531032 RBM8AQ9Y5S9 174 aaKnown RBP13.11□□□□□ -0.31
VPS28-214ENST00000531032 MICAL3Q7RTP6 2002 aa13.11□□□□□ -0.31
VPS28-214ENST00000531032 RSPH10B2B2RC85 870 aa13.1□□□□□ -0.31
VPS28-214ENST00000531032 NOP56O00567 594 aaKnown RBP13.1□□□□□ -0.31
VPS28-214ENST00000531032 FIBPO43427 364 aa13.1□□□□□ -0.31
VPS28-214ENST00000531032 CAND2O75155 1236 aa13.1□□□□□ -0.31
VPS28-214ENST00000531032 RSPH10BP0C881 870 aa13.1□□□□□ -0.31
VPS28-214ENST00000531032 SMIM10L2AP0DMW4 78 aa13.1□□□□□ -0.31
VPS28-214ENST00000531032 SMIM10L2BP0DMW5 78 aa13.1□□□□□ -0.31
VPS28-214ENST00000531032 KIF5BP33176 963 aa13.1□□□□□ -0.31
VPS28-214ENST00000531032 THPOP40225 353 aa13.1□□□□□ -0.31
VPS28-214ENST00000531032 KCNQ1P51787 676 aa13.1□□□□□ -0.31
VPS28-214ENST00000531032 PCNX4Q63HM2 1172 aa13.1□□□□□ -0.31
VPS28-214ENST00000531032 XRRA1Q6P2D8 792 aa13.1□□□□□ -0.31
VPS28-214ENST00000531032 CTCFLQ8NI51 663 aaPredicted RBP13.1□□□□□ -0.31
VPS28-214ENST00000531032 PIBF1Q8WXW3 757 aa13.1□□□□□ -0.31
VPS28-214ENST00000531032 ATP6V0A1Q93050 837 aa13.1□□□□□ -0.31
VPS28-214ENST00000531032 RRP36Q96EU6 259 aaKnown RBP13.1□□□□□ -0.31
VPS28-214ENST00000531032 GPR20Q99678 358 aa13.1□□□□□ -0.31
VPS28-214ENST00000531032 LZTS2Q9BRK4 669 aa13.1□□□□□ -0.31
VPS28-214ENST00000531032 MYL10Q9BUA6 226 aa13.1□□□□□ -0.31
VPS28-214ENST00000531032 LMCD1Q9NZU5 365 aa13.1□□□□□ -0.31
VPS28-214ENST00000531032 TCF20Q9UGU0 1960 aaKnown RBP13.1□□□□□ -0.31
VPS28-214ENST00000531032 LINC01553A4QN01 128 aa13.09□□□□□ -0.31
VPS28-214ENST00000531032 RBAK-RBAKDNI3L0D1 243 aa13.09□□□□□ -0.31
VPS28-214ENST00000531032 MEIS2O14770 477 aa13.09□□□□□ -0.31
VPS28-214ENST00000531032 TREHO43280 583 aa13.09□□□□□ -0.31
VPS28-214ENST00000531032 ERVK-21P61565 698 aa13.09□□□□□ -0.31
VPS28-214ENST00000531032 IRX6P78412 446 aaPredicted RBP13.09□□□□□ -0.31
VPS28-214ENST00000531032 PLEKHG4Q58EX7 1191 aa13.09□□□□□ -0.31
VPS28-214ENST00000531032 USP17L6PQ6QN14 398 aa13.09□□□□□ -0.31
VPS28-214ENST00000531032 CASC1Q6TDU7 716 aa13.09□□□□□ -0.31
VPS28-214ENST00000531032 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.09□□□□□ -0.31
VPS28-214ENST00000531032 CYFIP1Q7L576 1253 aa13.09□□□□□ -0.31
VPS28-214ENST00000531032 DBF4BQ8NFT6 615 aa13.09□□□□□ -0.31
VPS28-214ENST00000531032 SMARCC2Q8TAQ2 1214 aa13.09□□□□□ -0.31
VPS28-214ENST00000531032 GDPD5Q8WTR4 605 aa13.09□□□□□ -0.31
VPS28-214ENST00000531032 CUL5Q93034 780 aa13.09□□□□□ -0.31
VPS28-214ENST00000531032 TGS1Q96RS0 853 aaKnown RBP13.09□□□□□ -0.31
VPS28-214ENST00000531032 SENP7Q9BQF6 1050 aa13.09□□□□□ -0.31
VPS28-214ENST00000531032 RNPEPQ9H4A4 650 aa13.09□□□□□ -0.31
VPS28-214ENST00000531032 RTEL1Q9NZ71 1219 aa13.09□□□□□ -0.31
VPS28-214ENST00000531032 SH2B2O14492 632 aaPredicted RBP13.08□□□□□ -0.32
VPS28-214ENST00000531032 PRC1O43663 620 aa13.08□□□□□ -0.32
VPS28-214ENST00000531032 AMHP03971 560 aa13.08□□□□□ -0.32
VPS28-214ENST00000531032 GNAT1P11488 350 aa13.08□□□□□ -0.32
VPS28-214ENST00000531032 MCM5P33992 734 aa13.08□□□□□ -0.32
VPS28-214ENST00000531032 GNAQP50148 359 aa13.08□□□□□ -0.32
VPS28-214ENST00000531032 ADAM17P78536 824 aa13.08□□□□□ -0.32
VPS28-214ENST00000531032 TRIM50Q86XT4 487 aa13.08□□□□□ -0.32
VPS28-214ENST00000531032 TMTC2Q8N394 836 aa13.08□□□□□ -0.32
VPS28-214ENST00000531032 SRBD1Q8N5C6 995 aaKnown RBP13.08□□□□□ -0.32
VPS28-214ENST00000531032 HLA-CQ95604 372 aa13.08□□□□□ -0.32
VPS28-214ENST00000531032 TMEM87BQ96K49 555 aa13.08□□□□□ -0.32
VPS28-214ENST00000531032 NECAB3Q96P71 396 aaPredicted RBP13.08□□□□□ -0.32
VPS28-214ENST00000531032 LSG1Q9H089 658 aaKnown RBP13.08□□□□□ -0.32
VPS28-214ENST00000531032 SUGCTQ9HAC7 445 aa13.08□□□□□ -0.32
VPS28-214ENST00000531032 SEC63Q9UGP8 760 aaKnown RBP13.08□□□□□ -0.32
VPS28-214ENST00000531032 ZNF215Q9UL58 517 aaPredicted RBP13.08□□□□□ -0.32
VPS28-214ENST00000531032 TELO2Q9Y4R8 837 aa13.08□□□□□ -0.32
VPS28-214ENST00000531032 INSL6Q9Y581 213 aa13.08□□□□□ -0.32
VPS28-214ENST00000531032 COL4A6Q14031 1691 aa13.08□□□□□ -0.32
VPS28-214ENST00000531032 PLEKHA8P1O95397 391 aa13.07□□□□□ -0.32
VPS28-214ENST00000531032 LIFRP42702 1097 aa13.07□□□□□ -0.32
VPS28-214ENST00000531032 HTRA4P83105 476 aaPredicted RBP13.07□□□□□ -0.32
VPS28-214ENST00000531032 COL9A3Q14050 684 aaPredicted RBP13.07□□□□□ -0.32
VPS28-214ENST00000531032 FAM117BQ6P1L5 589 aa13.07□□□□□ -0.32
VPS28-214ENST00000531032 NLRX1Q86UT6 975 aa13.07□□□□□ -0.32
VPS28-214ENST00000531032 MYOCDQ8IZQ8 938 aa13.07□□□□□ -0.32
VPS28-214ENST00000531032 SP7Q8TDD2 431 aaPredicted RBP13.07□□□□□ -0.32
VPS28-214ENST00000531032 SETD4Q9NVD3 440 aa13.07□□□□□ -0.32
VPS28-214ENST00000531032 MTUS1Q9ULD2 1270 aa13.07□□□□□ -0.32
VPS28-214ENST00000531032 CCDC69A6NI79 296 aa13.06□□□□□ -0.32
VPS28-214ENST00000531032 SLC27A2O14975 620 aa13.06□□□□□ -0.32
VPS28-214ENST00000531032 CTSHP09668 335 aa13.06□□□□□ -0.32
VPS28-214ENST00000531032 CALM1P0DP23 149 aa13.06□□□□□ -0.32
VPS28-214ENST00000531032 CALM2P0DP24 149 aa13.06□□□□□ -0.32
VPS28-214ENST00000531032 CALM3P0DP25 149 aa13.06□□□□□ -0.32
VPS28-214ENST00000531032 NFXL1Q6ZNB6 911 aa13.06□□□□□ -0.32
VPS28-214ENST00000531032 GIMAP8Q8ND71 665 aaPredicted RBP13.06□□□□□ -0.32
VPS28-214ENST00000531032 LMBR1Q8WVP7 490 aa13.06□□□□□ -0.32
VPS28-214ENST00000531032 SEPT8Q92599 483 aa13.06□□□□□ -0.32
VPS28-214ENST00000531032 GPRASP2Q96D09 838 aa13.06□□□□□ -0.32
VPS28-214ENST00000531032 OSBPL7Q9BZF2 842 aa13.06□□□□□ -0.32
VPS28-214ENST00000531032 PSTPIP2Q9H939 334 aa13.06□□□□□ -0.32
VPS28-214ENST00000531032 BRWD1Q9NSI6 2320 aa13.05□□□□□ -0.32
VPS28-214ENST00000531032 KCNA2P16389 499 aa13.05□□□□□ -0.32
VPS28-214ENST00000531032 ITGB5P18084 799 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms