RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 IGLV3-22A0A075B6J6 115 aa23.82■■□□□ 1.4
VPS28-212ENST00000530836 CDC25AP30304 524 aa23.82■■□□□ 1.4
VPS28-212ENST00000530836 RGS2P41220 211 aa23.82■■□□□ 1.4
VPS28-212ENST00000530836 PCNX4Q63HM2 1172 aa23.82■■□□□ 1.4
VPS28-212ENST00000530836 TRIML1Q8N9V2 468 aa23.82■■□□□ 1.4
VPS28-212ENST00000530836 RAET1EQ8TD07 263 aa23.82■■□□□ 1.4
VPS28-212ENST00000530836 PAGE5Q96GU1 130 aa23.82■■□□□ 1.4
VPS28-212ENST00000530836 PTCH2Q9Y6C5 1203 aa23.82■■□□□ 1.4
VPS28-212ENST00000530836 XRCC5P13010 732 aaKnown RBP23.81■■□□□ 1.4
VPS28-212ENST00000530836 CYP2B6P20813 491 aa23.81■■□□□ 1.4
VPS28-212ENST00000530836 NLRP12P59046 1061 aa23.81■■□□□ 1.4
VPS28-212ENST00000530836 PDXDC2PQ6P474 469 aa23.81■■□□□ 1.4
VPS28-212ENST00000530836 NSMFQ6X4W1 530 aa23.81■■□□□ 1.4
VPS28-212ENST00000530836 ANKRD35Q8N283 1001 aa23.81■■□□□ 1.4
VPS28-212ENST00000530836 SPATA20Q8TB22 786 aa23.81■■□□□ 1.4
VPS28-212ENST00000530836 SMARCE1Q969G3 411 aa23.81■■□□□ 1.4
VPS28-212ENST00000530836 PCDHA5Q9Y5H7 936 aa23.81■■□□□ 1.4
VPS28-212ENST00000530836 KDM3AQ9Y4C1 1321 aa23.81■■□□□ 1.4
VPS28-212ENST00000530836 PP2D1A8MPX8 630 aa23.81■■□□□ 1.4
VPS28-212ENST00000530836 MEIS1O00470 390 aa23.81■■□□□ 1.4
VPS28-212ENST00000530836 COBLO75128 1261 aa23.81■■□□□ 1.4
VPS28-212ENST00000530836 HOXC6P09630 235 aa23.81■■□□□ 1.4
VPS28-212ENST00000530836 DPP9Q86TI2 863 aa23.81■■□□□ 1.4
VPS28-212ENST00000530836 RNF214Q8ND24 703 aa23.81■■□□□ 1.4
VPS28-212ENST00000530836 MCOLN1Q9GZU1 580 aa23.81■■□□□ 1.4
VPS28-212ENST00000530836 COL20A1Q9P218 1284 aa23.81■■□□□ 1.4
VPS28-212ENST00000530836 STK17AQ9UEE5 414 aa23.81■■□□□ 1.4
VPS28-212ENST00000530836 MSH4O15457 936 aa23.8■■□□□ 1.4
VPS28-212ENST00000530836 SARSP49591 514 aaKnown RBP23.8■■□□□ 1.4
VPS28-212ENST00000530836 ZNF165P49910 485 aa23.8■■□□□ 1.4
VPS28-212ENST00000530836 SEMA3FQ13275 785 aa23.8■■□□□ 1.4
VPS28-212ENST00000530836 PLA2G4DQ86XP0 818 aa23.8■■□□□ 1.4
VPS28-212ENST00000530836 ERMNQ8TAM6 284 aa23.8■■□□□ 1.4
VPS28-212ENST00000530836 CDK5RAP3Q96JB5 506 aa23.8■■□□□ 1.4
VPS28-212ENST00000530836 GSDMAQ96QA5 445 aa23.8■■□□□ 1.4
VPS28-212ENST00000530836 MXRA8Q9BRK3 442 aa23.8■■□□□ 1.4
VPS28-212ENST00000530836 A1CFQ9NQ94 594 aaKnown RBP23.8■■□□□ 1.4
VPS28-212ENST00000530836 MGAMO43451 1857 aa23.79■■□□□ 1.4
VPS28-212ENST00000530836 PGK2P07205 417 aa23.79■■□□□ 1.4
VPS28-212ENST00000530836 BAATQ14032 418 aaPredicted RBP23.79■■□□□ 1.4
VPS28-212ENST00000530836 HAUS3Q68CZ6 603 aa23.79■■□□□ 1.4
VPS28-212ENST00000530836 SLC30A10Q6XR72 485 aa23.79■■□□□ 1.4
VPS28-212ENST00000530836 KCTD17Q8N5Z5 321 aa23.79■■□□□ 1.4
VPS28-212ENST00000530836 ERCC4Q92889 916 aaPredicted RBP23.79■■□□□ 1.4
VPS28-212ENST00000530836 RMDN3Q96TC7 470 aa23.79■■□□□ 1.4
VPS28-212ENST00000530836 APBA2Q99767 749 aa23.79■■□□□ 1.4
VPS28-212ENST00000530836 MMTAG2Q9BU76 263 aaKnown RBP23.79■■□□□ 1.4
VPS28-212ENST00000530836 NT5C3AQ9H0P0 336 aa23.79■■□□□ 1.4
VPS28-212ENST00000530836 SLC5A4Q9NY91 659 aa23.79■■□□□ 1.4
VPS28-212ENST00000530836 PFASO15067 1338 aa23.78■■□□□ 1.4
VPS28-212ENST00000530836 DOCK3Q8IZD9 2030 aa23.78■■□□□ 1.4
VPS28-212ENST00000530836 DNAJC25-GNG10A0A024R161 153 aa23.78■■□□□ 1.4
VPS28-212ENST00000530836 POTEMA6NI47 508 aa23.78■■□□□ 1.4
VPS28-212ENST00000530836 GTPBP6O43824 516 aaPredicted RBP23.78■■□□□ 1.4
VPS28-212ENST00000530836 ARHGEF16Q5VV41 709 aa23.78■■□□□ 1.4
VPS28-212ENST00000530836 PXYLP1Q8TE99 480 aa23.78■■□□□ 1.4
VPS28-212ENST00000530836 SNX29Q8TEQ0 813 aa23.78■■□□□ 1.4
VPS28-212ENST00000530836 BPIFA3Q9BQP9 254 aa23.78■■□□□ 1.4
VPS28-212ENST00000530836 DNAJC25Q9H1X3 360 aa23.78■■□□□ 1.4
VPS28-212ENST00000530836 PXMP2Q9NR77 195 aa23.78■■□□□ 1.4
VPS28-212ENST00000530836 CYP39A1Q9NYL5 469 aa23.78■■□□□ 1.4
VPS28-212ENST00000530836 HTTP42858 3142 aa23.78■■□□□ 1.4
VPS28-212ENST00000530836 ADCY3O60266 1144 aa23.77■■□□□ 1.4
VPS28-212ENST00000530836 PLCG1P19174 1290 aa23.77■■□□□ 1.4
VPS28-212ENST00000530836 AFMP43652 599 aa23.77■■□□□ 1.4
VPS28-212ENST00000530836 AMPD3Q01432 767 aa23.77■■□□□ 1.4
VPS28-212ENST00000530836 DPYDQ12882 1025 aa23.77■■□□□ 1.4
VPS28-212ENST00000530836 ZNF792Q3KQV3 632 aa23.77■■□□□ 1.4
VPS28-212ENST00000530836 NAALADL2Q58DX5 795 aa23.77■■□□□ 1.4
VPS28-212ENST00000530836 HYIQ5T013 277 aa23.77■■□□□ 1.4
VPS28-212ENST00000530836 NPLOC4Q8TAT6 608 aa23.77■■□□□ 1.4
VPS28-212ENST00000530836 NSUN6Q8TEA1 469 aaKnown RBP23.77■■□□□ 1.4
VPS28-212ENST00000530836 TAAR1Q96RJ0 339 aa23.77■■□□□ 1.4
VPS28-212ENST00000530836 KBTBD4Q9NVX7 518 aa23.77■■□□□ 1.4
VPS28-212ENST00000530836 DIS3Q9Y2L1 958 aaKnown RBP23.77■■□□□ 1.4
VPS28-212ENST00000530836 PGM5Q15124 567 aa23.77■■□□□ 1.4
VPS28-212ENST00000530836 CYP2W1Q8TAV3 490 aa23.77■■□□□ 1.4
VPS28-212ENST00000530836 SLC5A5Q92911 643 aa23.77■■□□□ 1.4
VPS28-212ENST00000530836 PDCD2LQ9BRP1 358 aa23.77■■□□□ 1.4
VPS28-212ENST00000530836 LRRC27Q9C0I9 530 aa23.77■■□□□ 1.4
VPS28-212ENST00000530836 DACH1Q9UI36 760 aa23.77■■□□□ 1.4
VPS28-212ENST00000530836 UBIAD1Q9Y5Z9 338 aa23.77■■□□□ 1.4
VPS28-212ENST00000530836 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP23.76■■□□□ 1.39
VPS28-212ENST00000530836 PRR29P0C7W0 189 aa23.76■■□□□ 1.39
VPS28-212ENST00000530836 GRK4P32298 578 aa23.76■■□□□ 1.39
VPS28-212ENST00000530836 UBXN2AP68543 259 aa23.76■■□□□ 1.39
VPS28-212ENST00000530836 SPIRE1Q08AE8 756 aa23.76■■□□□ 1.39
VPS28-212ENST00000530836 CT47A1Q5JQC4 288 aaPredicted RBP23.76■■□□□ 1.39
VPS28-212ENST00000530836 TRMT44Q8IYL2 757 aaKnown RBP23.76■■□□□ 1.39
VPS28-212ENST00000530836 SLAIN1Q8ND83 568 aa23.76■■□□□ 1.39
VPS28-212ENST00000530836 RIT2Q99578 217 aa23.76■■□□□ 1.39
VPS28-212ENST00000530836 WDR11Q9BZH6 1224 aa23.76■■□□□ 1.39
VPS28-212ENST00000530836 CBX8Q9HC52 389 aa23.76■■□□□ 1.39
VPS28-212ENST00000530836 BIN1O00499 593 aa23.75■■□□□ 1.39
VPS28-212ENST00000530836 STAM2O75886 525 aa23.75■■□□□ 1.39
VPS28-212ENST00000530836 CCND2P30279 289 aa23.75■■□□□ 1.39
VPS28-212ENST00000530836 GRB10Q13322 594 aa23.75■■□□□ 1.39
VPS28-212ENST00000530836 DNERQ8NFT8 737 aa23.75■■□□□ 1.39
VPS28-212ENST00000530836 ZNF577Q9BSK1 485 aa23.75■■□□□ 1.39
VPS28-212ENST00000530836 JADE2Q9NQC1 790 aa23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms