RNA–Protein interactions for RNA: ENST00000529661.1

C11orf88-204, Transcript of chromosome 11 open reading frame 88, humanhuman

TSL 3

Gene C11orf88, Length 624 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf88-204ENST00000529661 PLEKHG4Q58EX7 1191 aa6.66□□□□□ -1.34
C11orf88-204ENST00000529661 OTOP3Q7RTS5 596 aa6.66□□□□□ -1.34
C11orf88-204ENST00000529661 SAPCD2Q86UD0 394 aa6.66□□□□□ -1.34
C11orf88-204ENST00000529661 SP8Q8IXZ3 490 aa6.66□□□□□ -1.34
C11orf88-204ENST00000529661 MARCH10Q8NA82 808 aaPredicted RBP6.66□□□□□ -1.34
C11orf88-204ENST00000529661 TP53I13Q8NBR0 393 aaPredicted RBP6.66□□□□□ -1.34
C11orf88-204ENST00000529661 SYT8Q8NBV8 401 aa6.66□□□□□ -1.34
C11orf88-204ENST00000529661 PHOSPHO1Q8TCT1 267 aa6.66□□□□□ -1.34
C11orf88-204ENST00000529661 KCNC2Q96PR1 638 aa6.66□□□□□ -1.34
C11orf88-204ENST00000529661 IPPKQ9H8X2 491 aa6.66□□□□□ -1.34
C11orf88-204ENST00000529661 SLC6A20Q9NP91 592 aa6.66□□□□□ -1.34
C11orf88-204ENST00000529661 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.66□□□□□ -1.34
C11orf88-204ENST00000529661 C6orf222P0C671 652 aaPredicted RBP6.65□□□□□ -1.34
C11orf88-204ENST00000529661 NCLP19338 710 aaKnown RBP6.65□□□□□ -1.34
C11orf88-204ENST00000529661 GABREP78334 506 aa6.65□□□□□ -1.34
C11orf88-204ENST00000529661 GUCY1A3Q02108 690 aa6.65□□□□□ -1.34
C11orf88-204ENST00000529661 LONRF2Q1L5Z9 754 aa6.65□□□□□ -1.34
C11orf88-204ENST00000529661 LIPIQ6XZB0 460 aa6.65□□□□□ -1.34
C11orf88-204ENST00000529661 TTLL10Q6ZVT0 673 aa6.65□□□□□ -1.34
C11orf88-204ENST00000529661 RBM12BQ8IXT5 1001 aaKnown RBP6.65□□□□□ -1.34
C11orf88-204ENST00000529661 FEZF2Q8TBJ5 459 aa6.65□□□□□ -1.34
C11orf88-204ENST00000529661 THAP3Q8WTV1 239 aaPredicted RBP6.65□□□□□ -1.34
C11orf88-204ENST00000529661 TOE1Q96GM8 510 aaKnown RBP6.65□□□□□ -1.34
C11orf88-204ENST00000529661 C11orf84Q9BUA3 381 aaPredicted RBP6.65□□□□□ -1.34
C11orf88-204ENST00000529661 NGRNQ9NPE2 291 aaKnown RBP6.65□□□□□ -1.34
C11orf88-204ENST00000529661 DTLQ9NZJ0 730 aa6.65□□□□□ -1.34
C11orf88-204ENST00000529661 NDOR1Q9UHB4 597 aa6.65□□□□□ -1.34
C11orf88-204ENST00000529661 NKRFO15226 690 aaKnown RBP eCLIP6.64□□□□□ -1.35
C11orf88-204ENST00000529661 HMGB1P09429 215 aaKnown RBP6.64□□□□□ -1.35
C11orf88-204ENST00000529661 ITGA1P56199 1179 aa6.64□□□□□ -1.35
C11orf88-204ENST00000529661 CAP1Q01518 475 aa6.64□□□□□ -1.35
C11orf88-204ENST00000529661 GRIN1Q05586 938 aa6.64□□□□□ -1.35
C11orf88-204ENST00000529661 PAK1Q13153 545 aa6.64□□□□□ -1.35
C11orf88-204ENST00000529661 SQSTM1Q13501 440 aa6.64□□□□□ -1.35
C11orf88-204ENST00000529661 CR1LQ2VPA4 569 aa6.64□□□□□ -1.35
C11orf88-204ENST00000529661 C2orf27AQ580R0 203 aa6.64□□□□□ -1.35
C11orf88-204ENST00000529661 ZDHHC14Q8IZN3 488 aa6.64□□□□□ -1.35
C11orf88-204ENST00000529661 KYQ8NBH2 561 aa6.64□□□□□ -1.35
C11orf88-204ENST00000529661 SPATA25Q9BR10 227 aa6.64□□□□□ -1.35
C11orf88-204ENST00000529661 PCDH18Q9HCL0 1135 aa6.64□□□□□ -1.35
C11orf88-204ENST00000529661 TMEM260Q9NX78 707 aa6.64□□□□□ -1.35
C11orf88-204ENST00000529661 ASH2LQ9UBL3 628 aa6.64□□□□□ -1.35
C11orf88-204ENST00000529661 PCDHA8Q9Y5H6 950 aa6.64□□□□□ -1.35
C11orf88-204ENST00000529661 ESYT3A0FGR9 886 aa6.63□□□□□ -1.35
C11orf88-204ENST00000529661 HOXA5P20719 270 aa6.63□□□□□ -1.35
C11orf88-204ENST00000529661 SLURP1P55000 103 aa6.63□□□□□ -1.35
C11orf88-204ENST00000529661 DLX2Q07687 328 aaPredicted RBP6.63□□□□□ -1.35
C11orf88-204ENST00000529661 TUSC3Q13454 348 aa6.63□□□□□ -1.35
C11orf88-204ENST00000529661 ZC3H12BQ5HYM0 836 aaKnown RBP6.63□□□□□ -1.35
C11orf88-204ENST00000529661 CYP4F22Q6NT55 531 aa6.63□□□□□ -1.35
C11orf88-204ENST00000529661 TEPPQ6URK8 271 aa6.63□□□□□ -1.35
C11orf88-204ENST00000529661 TTLL7Q6ZT98 887 aa6.63□□□□□ -1.35
C11orf88-204ENST00000529661 HOMER1Q86YM7 354 aa6.63□□□□□ -1.35
C11orf88-204ENST00000529661 TRIM48Q8IWZ4 208 aa6.63□□□□□ -1.35
C11orf88-204ENST00000529661 LINC00482Q8N8I6 264 aa6.63□□□□□ -1.35
C11orf88-204ENST00000529661 ZSWIM2Q8NEG5 633 aa6.63□□□□□ -1.35
C11orf88-204ENST00000529661 APPBP2Q92624 585 aa6.63□□□□□ -1.35
C11orf88-204ENST00000529661 KISS1RQ969F8 398 aaPredicted RBP6.63□□□□□ -1.35
C11orf88-204ENST00000529661 LUC7LQ9NQ29 371 aaKnown RBP6.63□□□□□ -1.35
C11orf88-204ENST00000529661 FANCLQ9NW38 375 aa6.63□□□□□ -1.35
C11orf88-204ENST00000529661 SPATA6Q9NWH7 488 aaPredicted RBP6.63□□□□□ -1.35
C11orf88-204ENST00000529661 NTMQ9P121 344 aa6.63□□□□□ -1.35
C11orf88-204ENST00000529661 DSEQ9UL01 958 aa6.63□□□□□ -1.35
C11orf88-204ENST00000529661 PCDHA9Q9Y5H5 950 aa6.63□□□□□ -1.35
C11orf88-204ENST00000529661 PTCH2Q9Y6C5 1203 aa6.63□□□□□ -1.35
C11orf88-204ENST00000529661 SH3D21A4FU49 640 aa6.62□□□□□ -1.35
C11orf88-204ENST00000529661 OTOL1A6NHN0 477 aaPredicted RBP6.62□□□□□ -1.35
C11orf88-204ENST00000529661 CRTAMO95727 393 aa6.62□□□□□ -1.35
C11orf88-204ENST00000529661 LRG1P02750 347 aa6.62□□□□□ -1.35
C11orf88-204ENST00000529661 LTFP02788 710 aa6.62□□□□□ -1.35
C11orf88-204ENST00000529661 SRGAP2CP0DJJ0 459 aa6.62□□□□□ -1.35
C11orf88-204ENST00000529661 HSP90B1P14625 803 aaKnown RBP6.62□□□□□ -1.35
C11orf88-204ENST00000529661 KCNC1P48547 511 aa6.62□□□□□ -1.35
C11orf88-204ENST00000529661 KIAA0907Q7Z7F0 614 aaPredicted RBP6.62□□□□□ -1.35
C11orf88-204ENST00000529661 CARFQ8N187 725 aa6.62□□□□□ -1.35
C11orf88-204ENST00000529661 TTLL6Q8N841 843 aa6.62□□□□□ -1.35
C11orf88-204ENST00000529661 UHMK1Q8TAS1 419 aaKnown RBP6.62□□□□□ -1.35
C11orf88-204ENST00000529661 CLEC4DQ8WXI8 215 aa6.62□□□□□ -1.35
C11orf88-204ENST00000529661 ZSWIM3Q96MP5 696 aa6.62□□□□□ -1.35
C11orf88-204ENST00000529661 CATSPERZQ9NTU4 200 aa6.62□□□□□ -1.35
C11orf88-204ENST00000529661 NUB1Q9Y5A7 615 aa6.62□□□□□ -1.35
C11orf88-204ENST00000529661 CDC45O75419 566 aa6.61□□□□□ -1.35
C11orf88-204ENST00000529661 APPP05067 770 aa6.61□□□□□ -1.35
C11orf88-204ENST00000529661 NAT1P18440 290 aa6.61□□□□□ -1.35
C11orf88-204ENST00000529661 THBS2P35442 1172 aa6.61□□□□□ -1.35
C11orf88-204ENST00000529661 SARSP49591 514 aaKnown RBP6.61□□□□□ -1.35
C11orf88-204ENST00000529661 TMC5Q6UXY8 1006 aa6.61□□□□□ -1.35
C11orf88-204ENST00000529661 PCDH19Q8TAB3 1148 aa6.61□□□□□ -1.35
C11orf88-204ENST00000529661 FBXW5Q969U6 566 aa6.61□□□□□ -1.35
C11orf88-204ENST00000529661 CD244Q9BZW8 370 aa6.61□□□□□ -1.35
C11orf88-204ENST00000529661 SLC52A2Q9HAB3 445 aa6.61□□□□□ -1.35
C11orf88-204ENST00000529661 RBPJLQ9UBG7 517 aa6.61□□□□□ -1.35
C11orf88-204ENST00000529661 CTSWP56202 376 aa6.6□□□□□ -1.35
C11orf88-204ENST00000529661 ST5P78524 1137 aa6.6□□□□□ -1.35
C11orf88-204ENST00000529661 HABP4Q5JVS0 413 aaKnown RBP6.6□□□□□ -1.35
C11orf88-204ENST00000529661 C16orf86Q6ZW13 317 aa6.6□□□□□ -1.35
C11orf88-204ENST00000529661 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.6□□□□□ -1.35
C11orf88-204ENST00000529661 ZC3H7AQ8IWR0 971 aaKnown RBP6.6□□□□□ -1.35
C11orf88-204ENST00000529661 XYLT2Q9H1B5 865 aa6.6□□□□□ -1.35
C11orf88-204ENST00000529661 USP40Q9NVE5 1235 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms