RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 CPA5Q8WXQ8 436 aa6.35□□□□□ -1.39
CD44-215ENST00000525241 PDGFDQ9GZP0 370 aaPredicted RBP6.35□□□□□ -1.39
CD44-215ENST00000525241 RNF38Q9H0F5 515 aa6.35□□□□□ -1.39
CD44-215ENST00000525241 SMURF1Q9HCE7 757 aa6.35□□□□□ -1.39
CD44-215ENST00000525241 LTFP02788 710 aa6.34□□□□□ -1.39
CD44-215ENST00000525241 MC3RP41968 323 aa6.34□□□□□ -1.39
CD44-215ENST00000525241 TXKP42681 527 aa6.34□□□□□ -1.39
CD44-215ENST00000525241 EPHA5P54756 1037 aa6.34□□□□□ -1.39
CD44-215ENST00000525241 TUSC3Q13454 348 aa6.34□□□□□ -1.39
CD44-215ENST00000525241 ETV3LQ6ZN32 361 aa6.34□□□□□ -1.39
CD44-215ENST00000525241 ATG14Q6ZNE5 492 aa6.34□□□□□ -1.39
CD44-215ENST00000525241 LRRTM3Q86VH5 581 aa6.34□□□□□ -1.39
CD44-215ENST00000525241 PTRH1Q86Y79 214 aaKnown RBP6.34□□□□□ -1.39
CD44-215ENST00000525241 FAM126BQ8IXS8 530 aa6.34□□□□□ -1.39
CD44-215ENST00000525241 CISD2Q8N5K1 135 aaKnown RBP6.34□□□□□ -1.39
CD44-215ENST00000525241 MFSD3Q96ES6 412 aa6.34□□□□□ -1.39
CD44-215ENST00000525241 PPP1R16BQ96T49 567 aa6.34□□□□□ -1.39
CD44-215ENST00000525241 SLC38A3Q99624 504 aa6.34□□□□□ -1.39
CD44-215ENST00000525241 CD244Q9BZW8 370 aa6.34□□□□□ -1.39
CD44-215ENST00000525241 SAMD15Q9P1V8 674 aa6.34□□□□□ -1.39
CD44-215ENST00000525241 SRPK3Q9UPE1 567 aa6.34□□□□□ -1.39
CD44-215ENST00000525241 NFIBO00712 420 aa6.33□□□□□ -1.4
CD44-215ENST00000525241 MAN2B1O00754 1011 aa6.33□□□□□ -1.4
CD44-215ENST00000525241 BUB1BO60566 1050 aaPredicted RBP6.33□□□□□ -1.4
CD44-215ENST00000525241 GLRX3O76003 335 aaKnown RBP6.33□□□□□ -1.4
CD44-215ENST00000525241 TSPAN15O95858 294 aa6.33□□□□□ -1.4
CD44-215ENST00000525241 JMJD7P0C870 316 aa6.33□□□□□ -1.4
CD44-215ENST00000525241 KRT15P19012 456 aa6.33□□□□□ -1.4
CD44-215ENST00000525241 MECP2P51608 486 aaKnown RBP6.33□□□□□ -1.4
CD44-215ENST00000525241 CACNB2Q08289 660 aaPredicted RBP6.33□□□□□ -1.4
CD44-215ENST00000525241 TMEM177Q53S58 311 aa6.33□□□□□ -1.4
CD44-215ENST00000525241 CDCA2Q69YH5 1023 aaPredicted RBP6.33□□□□□ -1.4
CD44-215ENST00000525241 KCTD1Q719H9 257 aa6.33□□□□□ -1.4
CD44-215ENST00000525241 DDX53Q86TM3 631 aaKnown RBP6.33□□□□□ -1.4
CD44-215ENST00000525241 TRIM48Q8IWZ4 208 aa6.33□□□□□ -1.4
CD44-215ENST00000525241 TMEFF1Q8IYR6 380 aa6.33□□□□□ -1.4
CD44-215ENST00000525241 FAM26EQ8N5C1 309 aa6.33□□□□□ -1.4
CD44-215ENST00000525241 TTLL11Q8NHH1 800 aa6.33□□□□□ -1.4
CD44-215ENST00000525241 PANK1Q8TE04 598 aa6.33□□□□□ -1.4
CD44-215ENST00000525241 DDX1Q92499 740 aaKnown RBP6.33□□□□□ -1.4
CD44-215ENST00000525241 CD320Q9NPF0 282 aa6.33□□□□□ -1.4
CD44-215ENST00000525241 SMG5Q9UPR3 1016 aaKnown RBP6.33□□□□□ -1.4
CD44-215ENST00000525241 NUB1Q9Y5A7 615 aa6.33□□□□□ -1.4
CD44-215ENST00000525241 A0A087X0B3 334 aa6.32□□□□□ -1.4
CD44-215ENST00000525241 LRG1P02750 347 aa6.32□□□□□ -1.4
CD44-215ENST00000525241 C8BP07358 591 aa6.32□□□□□ -1.4
CD44-215ENST00000525241 PFKLP17858 780 aa6.32□□□□□ -1.4
CD44-215ENST00000525241 POU3F2P20265 443 aaPredicted RBP6.32□□□□□ -1.4
CD44-215ENST00000525241 STAT5AP42229 794 aa6.32□□□□□ -1.4
CD44-215ENST00000525241 SSPNQ14714 243 aa6.32□□□□□ -1.4
CD44-215ENST00000525241 ZNF124Q15973 351 aa6.32□□□□□ -1.4
CD44-215ENST00000525241 CR1LQ2VPA4 569 aa6.32□□□□□ -1.4
CD44-215ENST00000525241 CFAP100Q494V2 611 aa6.32□□□□□ -1.4
CD44-215ENST00000525241 PIK3R6Q5UE93 754 aa6.32□□□□□ -1.4
CD44-215ENST00000525241 CNNM4Q6P4Q7 775 aa6.32□□□□□ -1.4
CD44-215ENST00000525241 HHIPL2Q6UWX4 724 aa6.32□□□□□ -1.4
CD44-215ENST00000525241 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.32□□□□□ -1.4
CD44-215ENST00000525241 B3GNT8Q7Z7M8 397 aa6.32□□□□□ -1.4
CD44-215ENST00000525241 NLGN4XQ8N0W4 816 aa6.32□□□□□ -1.4
CD44-215ENST00000525241 SIGLEC10Q96LC7 697 aa6.32□□□□□ -1.4
CD44-215ENST00000525241 TARS2Q9BW92 718 aaKnown RBP6.32□□□□□ -1.4
CD44-215ENST00000525241 MTFR1LQ9H019 292 aa6.32□□□□□ -1.4
CD44-215ENST00000525241 EPB41L4AQ9HCS5 686 aaPredicted RBP6.32□□□□□ -1.4
CD44-215ENST00000525241 DTLQ9NZJ0 730 aa6.32□□□□□ -1.4
CD44-215ENST00000525241 M0R2C6 588 aa6.31□□□□□ -1.4
CD44-215ENST00000525241 TRAF5O00463 557 aa6.31□□□□□ -1.4
CD44-215ENST00000525241 KCNK3O14649 394 aa6.31□□□□□ -1.4
CD44-215ENST00000525241 C8AP07357 584 aa6.31□□□□□ -1.4
CD44-215ENST00000525241 FLT3P36888 993 aa6.31□□□□□ -1.4
CD44-215ENST00000525241 GRIN1Q05586 938 aa6.31□□□□□ -1.4
CD44-215ENST00000525241 FIGNQ5HY92 759 aa6.31□□□□□ -1.4
CD44-215ENST00000525241 FSTL4Q6MZW2 842 aa6.31□□□□□ -1.4
CD44-215ENST00000525241 UBE2R2Q712K3 238 aaPredicted RBP6.31□□□□□ -1.4
CD44-215ENST00000525241 SMARCC2Q8TAQ2 1214 aa6.31□□□□□ -1.4
CD44-215ENST00000525241 TOE1Q96GM8 510 aaKnown RBP6.31□□□□□ -1.4
CD44-215ENST00000525241 WNK4Q96J92 1243 aa6.31□□□□□ -1.4
CD44-215ENST00000525241 SYT3Q9BQG1 590 aa6.31□□□□□ -1.4
CD44-215ENST00000525241 ORAI3Q9BRQ5 295 aa6.31□□□□□ -1.4
CD44-215ENST00000525241 SLKQ9H2G2 1235 aaPredicted RBP6.31□□□□□ -1.4
CD44-215ENST00000525241 HSPBP1Q9NZL4 362 aa6.31□□□□□ -1.4
CD44-215ENST00000525241 IRAK3Q9Y616 596 aa6.31□□□□□ -1.4
CD44-215ENST00000525241 LOC105371045A0A1W2PR82 267 aa6.3□□□□□ -1.4
CD44-215ENST00000525241 TCAF2A6NFQ2 919 aa6.3□□□□□ -1.4
CD44-215ENST00000525241 FAM90A27PA6NNH2 459 aa6.3□□□□□ -1.4
CD44-215ENST00000525241 GSG1L2A8MUP6 293 aa6.3□□□□□ -1.4
CD44-215ENST00000525241 ACOT7O00154 380 aa6.3□□□□□ -1.4
CD44-215ENST00000525241 CBX4O00257 560 aa6.3□□□□□ -1.4
CD44-215ENST00000525241 CLSTN1O94985 981 aa6.3□□□□□ -1.4
CD44-215ENST00000525241 MYCLP1P12525 358 aaPredicted RBP6.3□□□□□ -1.4
CD44-215ENST00000525241 RAP1GAPP47736 663 aa6.3□□□□□ -1.4
CD44-215ENST00000525241 LIMS1P48059 325 aa6.3□□□□□ -1.4
CD44-215ENST00000525241 FOXO4P98177 505 aa6.3□□□□□ -1.4
CD44-215ENST00000525241 PCBP1Q15365 356 aaKnown RBP eCLIP6.3□□□□□ -1.4
CD44-215ENST00000525241 SEC23AQ15436 765 aa6.3□□□□□ -1.4
CD44-215ENST00000525241 PAN2Q504Q3 1202 aaKnown RBP6.3□□□□□ -1.4
CD44-215ENST00000525241 TEPPQ6URK8 271 aa6.3□□□□□ -1.4
CD44-215ENST00000525241 CD300LDQ6UXZ3 194 aa6.3□□□□□ -1.4
CD44-215ENST00000525241 OTOP1Q7RTM1 612 aa6.3□□□□□ -1.4
CD44-215ENST00000525241 FAM129CQ86XR2 697 aa6.3□□□□□ -1.4
CD44-215ENST00000525241 C2orf69Q8N8R5 385 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms