RNA–Protein interactions for RNA: ENST00000522963.5

PVT1-215, Transcript of Pvt1 oncogene, human

TSL 4

Gene PVT1, Length 568 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-215	ENST00000522963	DDX25	Q9UHL0	483 aa	Known RBP	13.52	□□□□□ -0.25
PVT1-215	ENST00000522963	GNE	Q9Y223	722 aa	Known RBP	13.52	□□□□□ -0.25
PVT1-215	ENST00000522963	MEIS1	O00470	390 aa		13.51	□□□□□ -0.25
PVT1-215	ENST00000522963	STAM2	O75886	525 aa		13.51	□□□□□ -0.25
PVT1-215	ENST00000522963	COL6A1	P12109	1028 aa		13.51	□□□□□ -0.25
PVT1-215	ENST00000522963	GJA9	P57773	515 aa		13.51	□□□□□ -0.25
PVT1-215	ENST00000522963	SF3A1	Q15459	793 aa	Known RBP	13.51	□□□□□ -0.25
PVT1-215	ENST00000522963	LY6K	Q17RY6	165 aa		13.51	□□□□□ -0.25
PVT1-215	ENST00000522963	LRRC26	Q2I0M4	334 aa		13.51	□□□□□ -0.25
PVT1-215	ENST00000522963		Q4G0T1	1027 aa		13.51	□□□□□ -0.25
PVT1-215	ENST00000522963	DUSP28	Q4G0W2	176 aa		13.51	□□□□□ -0.25
PVT1-215	ENST00000522963	PRR16	Q569H4	304 aa		13.51	□□□□□ -0.25
PVT1-215	ENST00000522963	ATL3	Q6DD88	541 aa		13.51	□□□□□ -0.25
PVT1-215	ENST00000522963	NIPA1	Q7RTP0	329 aa		13.51	□□□□□ -0.25
PVT1-215	ENST00000522963	PLA2G4D	Q86XP0	818 aa		13.51	□□□□□ -0.25
PVT1-215	ENST00000522963	POTED	Q86YR6	584 aa		13.51	□□□□□ -0.25
PVT1-215	ENST00000522963	C4orf32	Q8N8J7	132 aa		13.51	□□□□□ -0.25
PVT1-215	ENST00000522963	UPF3A	Q9H1J1	476 aa	Known RBP	13.51	□□□□□ -0.25
PVT1-215	ENST00000522963	TMEM60	Q9H2L4	133 aa		13.51	□□□□□ -0.25
PVT1-215	ENST00000522963	ATP11B	Q9Y2G3	1177 aa		13.51	□□□□□ -0.25
PVT1-215	ENST00000522963	MRVI1	Q9Y6F6	885 aa		13.51	□□□□□ -0.25
PVT1-215	ENST00000522963	CEP290	O15078	2479 aa		13.51	□□□□□ -0.25
PVT1-215	ENST00000522963	RBM47	A0AV96	593 aa	Known RBP	13.5	□□□□□ -0.25
PVT1-215	ENST00000522963	NEMF	O60524	1076 aa		13.5	□□□□□ -0.25
PVT1-215	ENST00000522963	ARIH2	O95376	493 aa		13.5	□□□□□ -0.25
PVT1-215	ENST00000522963	ASGR1	P07306	291 aa		13.5	□□□□□ -0.25
PVT1-215	ENST00000522963	AR	P10275	920 aa		13.5	□□□□□ -0.25
PVT1-215	ENST00000522963	NASP	P49321	788 aa	Predicted RBP	13.5	□□□□□ -0.25
PVT1-215	ENST00000522963	ACLY	P53396	1101 aa		13.5	□□□□□ -0.25
PVT1-215	ENST00000522963	SEMA3F	Q13275	785 aa		13.5	□□□□□ -0.25
PVT1-215	ENST00000522963	ORC2	Q13416	577 aa	Predicted RBP	13.5	□□□□□ -0.25
PVT1-215	ENST00000522963	PTPA	Q15257	358 aa		13.5	□□□□□ -0.25
PVT1-215	ENST00000522963	FSCN1	Q16658	493 aa	Known RBP	13.5	□□□□□ -0.25
PVT1-215	ENST00000522963	PCSK9	Q8NBP7	692 aa	Known RBP	13.5	□□□□□ -0.25
PVT1-215	ENST00000522963	KLHDC9	Q8NEP7	349 aa		13.5	□□□□□ -0.25
PVT1-215	ENST00000522963	GPRASP2	Q96D09	838 aa		13.5	□□□□□ -0.25
PVT1-215	ENST00000522963	UIMC1	Q96RL1	719 aa		13.5	□□□□□ -0.25
PVT1-215	ENST00000522963	POLR3E	Q9NVU0	708 aa		13.5	□□□□□ -0.25
PVT1-215	ENST00000522963	PHF24	Q9UPV7	400 aa		13.5	□□□□□ -0.25
PVT1-215	ENST00000522963	NR2E3	Q9Y5X4	410 aa		13.5	□□□□□ -0.25
PVT1-215	ENST00000522963		A0A1W2PQ45	241 aa	Predicted RBP	13.49	□□□□□ -0.25
PVT1-215	ENST00000522963		A0A1W2PQY0	241 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	SPATA31C2	B4DYI2	1134 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	MSH4	O15457	936 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	ZEB2	O60315	1214 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	MYL3	P08590	195 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	NCL	P19338	710 aa	Known RBP	13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	ICAM3	P32942	547 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	RTP1	P59025	263 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	CHMP4BP1	P59074	171 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	KRT85	P78386	507 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	ATP2C1	P98194	919 aa	Predicted RBP	13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	SET	Q01105	290 aa	Predicted RBP	13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	PTGDR	Q13258	359 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	MTMR1	Q13613	665 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	CALCRL	Q16602	461 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	GNPTAB	Q3T906	1256 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	SLC39A5	Q6ZMH5	540 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	NLRX1	Q86UT6	975 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	LINC00301	Q8NCQ3	95 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	ETNPPL	Q8TBG4	499 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	HAS1	Q92839	578 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	GJA10	Q969M2	543 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	MTMR9	Q96QG7	549 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	TSEN34	Q9BSV6	310 aa	Known RBP	13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	KCNMB3	Q9NPA1	279 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	STARD7	Q9NQZ5	370 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	KCNH7	Q9NS40	1196 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	PCDH10	Q9P2E7	1040 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	CFAP45	Q9UL16	551 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	CEP131	Q9UPN4	1083 aa		13.49	□□□□□ -0.25
PVT1-215	ENST00000522963	MOXD2P	A6NHM9	499 aa		13.48	□□□□□ -0.25
PVT1-215	ENST00000522963		H0YGN5	161 aa		13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	NKRF	O15226	690 aa	Known RBP eCLIP	13.48	□□□□□ -0.25	8e-7	■■□□□ 12.5
PVT1-215	ENST00000522963	CTAGE5	O15320	804 aa		13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	FIBP	O43427	364 aa		13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	BAG4	O95429	457 aa	Known RBP	13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	YEATS4	O95619	227 aa		13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	BMP15	O95972	392 aa		13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	GH1	P01241	217 aa		13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	OR52Z1	P0C646	297 aa		13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	SYN1	P17600	705 aa		13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	CST5	P28325	142 aa	Predicted RBP	13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	SLC39A14	Q15043	492 aa		13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	TRIM60	Q495X7	471 aa		13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	BRDT	Q58F21	947 aa	Predicted RBP	13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	CXCL17	Q6UXB2	119 aa		13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	LEO1	Q8WVC0	666 aa	Predicted RBP	13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	GLT1D1	Q96MS3	346 aa		13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	GDPD2	Q9HCC8	539 aa		13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	AGO4	Q9HCK5	861 aa	Known RBP	13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	PKD2L1	Q9P0L9	805 aa		13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	RCOR1	Q9UKL0	485 aa		13.48	□□□□□ -0.25
PVT1-215	ENST00000522963		Q9Y3F1	56 aa		13.48	□□□□□ -0.25
PVT1-215	ENST00000522963	DOCK5	Q9H7D0	1870 aa		13.47	□□□□□ -0.25
PVT1-215	ENST00000522963	TBX3	O15119	743 aa		13.47	□□□□□ -0.25
PVT1-215	ENST00000522963	MAFG	O15525	162 aa		13.47	□□□□□ -0.25
PVT1-215	ENST00000522963	ATP9A	O75110	1047 aa		13.47	□□□□□ -0.25
PVT1-215	ENST00000522963	MARCKS	P29966	332 aa	Predicted RBP	13.47	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms