RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 RSRC1Q96IZ7 334 aaKnown RBP12.77□□□□□ -0.37
SYNPO-204ENST00000519664 MXD3Q9BW11 206 aa12.77□□□□□ -0.37
SYNPO-204ENST00000519664 TUBE1Q9UJT0 475 aa12.77□□□□□ -0.37
SYNPO-204ENST00000519664 STK4Q13043 487 aa12.77□□□□□ -0.37
SYNPO-204ENST00000519664 SNX1Q13596 522 aa12.77□□□□□ -0.37
SYNPO-204ENST00000519664 EEPD1Q7L9B9 569 aa12.77□□□□□ -0.37
SYNPO-204ENST00000519664 AGPAT5Q9NUQ2 364 aa12.77□□□□□ -0.37
SYNPO-204ENST00000519664 MYL1P05976 194 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 ADCY8P40145 1251 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 SLCO1A2P46721 670 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 STAT2P52630 851 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 RAD9BQ6WBX8 426 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 RAB17Q9H0T7 212 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 AZI2Q9H6S1 392 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 FAM184BQ9ULE4 1060 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 CAPN7Q9Y6W3 813 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 PSMC2P35998 433 aaKnown RBP12.76□□□□□ -0.37
SYNPO-204ENST00000519664 MYL7Q01449 175 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 SYDE2Q5VT97 1194 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 NFRKBQ6P4R8 1299 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 UNC13DQ70J99 1090 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 SFR1Q86XK3 245 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 PHF20Q9BVI0 1012 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 UBE2TQ9NPD8 197 aaPredicted RBP12.76□□□□□ -0.37
SYNPO-204ENST00000519664 WTIPA6NIX2 430 aaPredicted RBP12.76□□□□□ -0.37
SYNPO-204ENST00000519664 C21orf2O43822 256 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 TMOD1P28289 359 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 TC2NQ8N9U0 490 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 CNKSR1Q969H4 720 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 DNAI2Q9GZS0 605 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 VPS37BQ9H9H4 285 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 GAS8O95995 478 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 GRM4Q14833 912 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 TMC4Q7Z404 712 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 ANKRD35Q8N283 1001 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 SUPT20HQ8NEM7 779 aa12.76□□□□□ -0.37
SYNPO-204ENST00000519664 DNAJC17Q9NVM6 304 aaKnown RBP12.76□□□□□ -0.37
SYNPO-204ENST00000519664 TRPC5Q9UL62 973 aaPredicted RBP12.76□□□□□ -0.37
SYNPO-204ENST00000519664 DIP2AQ14689 1571 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 PXDNLA1KZ92 1463 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 PXDNQ92626 1479 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 ZBTB5O15062 677 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 BSPRYQ5W0U4 402 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 FERMT1Q9BQL6 677 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 VSIG1Q86XK7 387 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 ADGRF4Q8IZF3 695 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 BAIAP2L1Q9UHR4 511 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 PCDHA6Q9UN73 950 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 PCDHA8Q9Y5H6 950 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 STK24Q9Y6E0 443 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 ZNF185O15231 689 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 PALMO75781 387 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 ATP1A1P05023 1023 aaKnown RBP12.75□□□□□ -0.37
SYNPO-204ENST00000519664 CLNS1AP54105 237 aaKnown RBP12.75□□□□□ -0.37
SYNPO-204ENST00000519664 LRRC63Q05C16 580 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 SETDB1Q15047 1291 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 QRICH1Q2TAL8 776 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 INTS8Q75QN2 995 aaKnown RBP12.75□□□□□ -0.37
SYNPO-204ENST00000519664 OTUD6AQ7L8S5 288 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 HOOK2Q96ED9 719 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 PARVGQ9HBI0 331 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 C1orf112Q9NSG2 853 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 TXNDC16Q9P2K2 825 aa12.75□□□□□ -0.37
SYNPO-204ENST00000519664 SCAF8Q9UPN6 1271 aaKnown RBP12.75□□□□□ -0.37
SYNPO-204ENST00000519664 SMIM22K7EJ46 135 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 ORC4O43929 436 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 CRKP46108 304 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 KCNH2Q12809 1159 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 TROAPQ12815 778 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 TRIM9Q9C026 710 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 COA1Q9GZY4 146 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 ADD3Q9UEY8 706 aaKnown RBP12.74□□□□□ -0.37
SYNPO-204ENST00000519664 COMMD10Q9Y6G5 202 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 F5H6K3 240 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 KLRC3Q07444 240 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 RASA3Q14644 834 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 PTPAQ15257 358 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 FAM83BQ5T0W9 1011 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 TXNRD3Q86VQ6 643 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 SH3GLB2Q9NR46 395 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 NTSR2O95665 410 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 ARHGAP4P98171 946 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 DHX9Q08211 1270 aaKnown RBP12.74□□□□□ -0.37
SYNPO-204ENST00000519664 TRIP13Q15645 432 aaPredicted RBP12.74□□□□□ -0.37
SYNPO-204ENST00000519664 EXOC4Q96A65 974 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 NPHP3-ACAD11A0A0J9YXS1 232 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 TADA3O75528 432 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 COASYQ13057 564 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 IFT88Q13099 833 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 DMP1Q13316 513 aaPredicted RBP12.74□□□□□ -0.37
SYNPO-204ENST00000519664 KRT27Q7Z3Y8 459 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 NEDD1Q8NHV4 660 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 CEP170P1Q96L14 293 aa12.74□□□□□ -0.37
SYNPO-204ENST00000519664 SERPING1P05155 500 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 TOB1P50616 345 aaPredicted RBP12.73□□□□□ -0.37
SYNPO-204ENST00000519664 PDE6CP51160 858 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 VSNL1P62760 191 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 IGBP1P78318 339 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 MTMR3Q13615 1198 aa12.73□□□□□ -0.37
SYNPO-204ENST00000519664 EFCAB13Q8IY85 973 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms