RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 LY6KQ17RY6 165 aa23.71■■□□□ 1.39
LSM6-207ENST00000515311 LRCH2Q5VUJ6 765 aa23.71■■□□□ 1.39
LSM6-207ENST00000515311 KCNG4Q8TDN1 519 aa23.71■■□□□ 1.39
LSM6-207ENST00000515311 RCOR1Q9UKL0 485 aa23.71■■□□□ 1.39
LSM6-207ENST00000515311 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.7■■□□□ 1.38
LSM6-207ENST00000515311 GAS7O60861 476 aa23.7■■□□□ 1.38
LSM6-207ENST00000515311 SMPD1P17405 629 aa23.7■■□□□ 1.38
LSM6-207ENST00000515311 CCND3P30281 292 aaPredicted RBP23.7■■□□□ 1.38
LSM6-207ENST00000515311 METTL7BQ6UX53 244 aa23.7■■□□□ 1.38
LSM6-207ENST00000515311 CLEC17AQ6ZS10 378 aa23.7■■□□□ 1.38
LSM6-207ENST00000515311 EMID1Q96A84 441 aaPredicted RBP23.7■■□□□ 1.38
LSM6-207ENST00000515311 CHAMP1Q96JM3 812 aa23.7■■□□□ 1.38
LSM6-207ENST00000515311 HMX1Q9NP08 348 aaPredicted RBP23.7■■□□□ 1.38
LSM6-207ENST00000515311 PKD2L1Q9P0L9 805 aa23.7■■□□□ 1.38
LSM6-207ENST00000515311 SPTLC2O15270 562 aa23.69■■□□□ 1.38
LSM6-207ENST00000515311 ADCY6O43306 1168 aa23.69■■□□□ 1.38
LSM6-207ENST00000515311 PPP6R2O75170 966 aa23.69■■□□□ 1.38
LSM6-207ENST00000515311 GGPS1O95749 300 aa23.69■■□□□ 1.38
LSM6-207ENST00000515311 GH1P01241 217 aa23.69■■□□□ 1.38
LSM6-207ENST00000515311 TXKP42681 527 aa23.69■■□□□ 1.38
LSM6-207ENST00000515311 CELF3Q5SZQ8 465 aaKnown RBP23.69■■□□□ 1.38
LSM6-207ENST00000515311 FERMT2Q96AC1 680 aa23.69■■□□□ 1.38
LSM6-207ENST00000515311 TEKT3Q9BXF9 490 aa23.69■■□□□ 1.38
LSM6-207ENST00000515311 TTC12Q9H892 705 aaPredicted RBP23.69■■□□□ 1.38
LSM6-207ENST00000515311 JPH1Q9HDC5 661 aaPredicted RBP23.69■■□□□ 1.38
LSM6-207ENST00000515311 VAV3Q9UKW4 847 aa23.69■■□□□ 1.38
LSM6-207ENST00000515311 PCDHA12Q9UN75 941 aa23.69■■□□□ 1.38
LSM6-207ENST00000515311 GNEQ9Y223 722 aaKnown RBP23.69■■□□□ 1.38
LSM6-207ENST00000515311 Q9Y3F1 56 aa23.69■■□□□ 1.38
LSM6-207ENST00000515311 FRMPD3Q5JV73 1810 aa23.68■■□□□ 1.38
LSM6-207ENST00000515311 DUSP11O75319 330 aaKnown RBP23.68■■□□□ 1.38
LSM6-207ENST00000515311 FARP2O94887 1054 aaPredicted RBP23.68■■□□□ 1.38
LSM6-207ENST00000515311 CNGA1P29973 690 aa23.68■■□□□ 1.38
LSM6-207ENST00000515311 FXR2P51116 673 aaKnown RBP eCLIP23.68■■□□□ 1.38
LSM6-207ENST00000515311 ARHGAP1Q07960 439 aa23.68■■□□□ 1.38
LSM6-207ENST00000515311 PPP2R5CQ13362 524 aa23.68■■□□□ 1.38
LSM6-207ENST00000515311 LAMC2Q13753 1193 aa23.68■■□□□ 1.38
LSM6-207ENST00000515311 TMEM266Q2M3C6 531 aa23.68■■□□□ 1.38
LSM6-207ENST00000515311 TMEM63BQ5T3F8 832 aa23.68■■□□□ 1.38
LSM6-207ENST00000515311 DTHD1Q6ZMT9 781 aa23.68■■□□□ 1.38
LSM6-207ENST00000515311 PPP4R3CPQ6ZMV5 832 aa23.68■■□□□ 1.38
LSM6-207ENST00000515311 LEO1Q8WVC0 666 aaPredicted RBP23.68■■□□□ 1.38
LSM6-207ENST00000515311 GJA10Q969M2 543 aa23.68■■□□□ 1.38
LSM6-207ENST00000515311 ARMC5Q96C12 935 aa23.68■■□□□ 1.38
LSM6-207ENST00000515311 SPATA32Q96LK8 384 aa23.68■■□□□ 1.38
LSM6-207ENST00000515311 UIMC1Q96RL1 719 aa23.68■■□□□ 1.38
LSM6-207ENST00000515311 TCEAL9Q9UHQ7 104 aa23.68■■□□□ 1.38
LSM6-207ENST00000515311 MSCO60682 206 aa23.67■■□□□ 1.38
LSM6-207ENST00000515311 KRT76Q01546 638 aa23.67■■□□□ 1.38
LSM6-207ENST00000515311 ZNF746Q6NUN9 644 aaPredicted RBP23.67■■□□□ 1.38
LSM6-207ENST00000515311 B3GNT9Q6UX72 402 aa23.67■■□□□ 1.38
LSM6-207ENST00000515311 CYFIP1Q7L576 1253 aa23.67■■□□□ 1.38
LSM6-207ENST00000515311 DHX37Q8IY37 1157 aaKnown RBP23.67■■□□□ 1.38
LSM6-207ENST00000515311 SLC9A2Q9UBY0 812 aa23.67■■□□□ 1.38
LSM6-207ENST00000515311 FBXO2Q9UK22 296 aaPredicted RBP23.67■■□□□ 1.38
LSM6-207ENST00000515311 SRPRBQ9Y5M8 271 aaKnown RBP23.67■■□□□ 1.38
LSM6-207ENST00000515311 CENPFP49454 3210 aa23.67■■□□□ 1.38
LSM6-207ENST00000515311 RARBP10826 455 aa23.66■■□□□ 1.38
LSM6-207ENST00000515311 SPIRE1Q08AE8 756 aa23.66■■□□□ 1.38
LSM6-207ENST00000515311 PDIA5Q14554 519 aa23.66■■□□□ 1.38
LSM6-207ENST00000515311 IL17AQ16552 155 aa23.66■■□□□ 1.38
LSM6-207ENST00000515311 RAB34Q9BZG1 259 aa23.66■■□□□ 1.38
LSM6-207ENST00000515311 MLXIPQ9HAP2 919 aa23.66■■□□□ 1.38
LSM6-207ENST00000515311 DDX20Q9UHI6 824 aaKnown RBP23.66■■□□□ 1.38
LSM6-207ENST00000515311 ELP1O95163 1332 aa23.65■■□□□ 1.38
LSM6-207ENST00000515311 MARCKSP29966 332 aaPredicted RBP23.65■■□□□ 1.38
LSM6-207ENST00000515311 GJC2Q5T442 439 aaPredicted RBP23.65■■□□□ 1.38
LSM6-207ENST00000515311 TLK2Q86UE8 772 aa23.65■■□□□ 1.38
LSM6-207ENST00000515311 SMAP1Q8IYB5 467 aaPredicted RBP23.65■■□□□ 1.38
LSM6-207ENST00000515311 IGSF22Q8N9C0 903 aa23.65■■□□□ 1.38
LSM6-207ENST00000515311 KRI1Q8N9T8 703 aaKnown RBP23.65■■□□□ 1.38
LSM6-207ENST00000515311 RDM1Q8NG50 284 aa23.65■■□□□ 1.38
LSM6-207ENST00000515311 COPS5Q92905 334 aa23.65■■□□□ 1.38
LSM6-207ENST00000515311 ZNF333Q96JL9 665 aa23.65■■□□□ 1.38
LSM6-207ENST00000515311 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.65■■□□□ 1.38
LSM6-207ENST00000515311 UNC45AQ9H3U1 944 aa23.65■■□□□ 1.38
LSM6-207ENST00000515311 BCAS3Q9H6U6 928 aa23.65■■□□□ 1.38
LSM6-207ENST00000515311 VWA3AA6NCI4 1184 aa23.64■■□□□ 1.37
LSM6-207ENST00000515311 DDX39AO00148 427 aaKnown RBP23.64■■□□□ 1.37
LSM6-207ENST00000515311 CCNE2O96020 404 aa23.64■■□□□ 1.37
LSM6-207ENST00000515311 SFNP31947 248 aa23.64■■□□□ 1.37
LSM6-207ENST00000515311 TECP42680 631 aa23.64■■□□□ 1.37
LSM6-207ENST00000515311 NKX3-2P78367 333 aa23.64■■□□□ 1.37
LSM6-207ENST00000515311 CSPP1Q1MSJ5 1256 aa23.64■■□□□ 1.37
LSM6-207ENST00000515311 OR6J1Q8NGC5 347 aa23.64■■□□□ 1.37
LSM6-207ENST00000515311 PPTC7Q8NI37 304 aa23.64■■□□□ 1.37
LSM6-207ENST00000515311 LENG1Q96BZ8 264 aaPredicted RBP23.64■■□□□ 1.37
LSM6-207ENST00000515311 AK8Q96MA6 479 aa23.64■■□□□ 1.37
LSM6-207ENST00000515311 GBP4Q96PP9 640 aa23.64■■□□□ 1.37
LSM6-207ENST00000515311 AP5M1Q9H0R1 490 aa23.64■■□□□ 1.37
LSM6-207ENST00000515311 UPF3AQ9H1J1 476 aaKnown RBP23.64■■□□□ 1.37
LSM6-207ENST00000515311 PAK6Q9NQU5 681 aaPredicted RBP23.64■■□□□ 1.37
LSM6-207ENST00000515311 WDR81Q562E7 1941 aa23.63■■□□□ 1.37
LSM6-207ENST00000515311 WDR64B1ANS9 1081 aa23.63■■□□□ 1.37
LSM6-207ENST00000515311 CCL5P13501 91 aa23.63■■□□□ 1.37
LSM6-207ENST00000515311 LONP1P36776 959 aaKnown RBP23.63■■□□□ 1.37
LSM6-207ENST00000515311 ME1P48163 572 aa23.63■■□□□ 1.37
LSM6-207ENST00000515311 JAK3P52333 1124 aa23.63■■□□□ 1.37
LSM6-207ENST00000515311 ACTR2P61160 394 aa23.63■■□□□ 1.37
LSM6-207ENST00000515311 SPATA33Q96N06 139 aa23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms