RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 KCNQ3O43525 872 aa14.38□□□□□ -0.11
TCOF1-214ENST00000515035 TOM1L1O75674 476 aa14.38□□□□□ -0.11
TCOF1-214ENST00000515035 BPIFB4P59827 614 aa14.38□□□□□ -0.11
TCOF1-214ENST00000515035 MUM1L1Q5H9M0 696 aa14.38□□□□□ -0.11
TCOF1-214ENST00000515035 MAML1Q92585 1016 aa14.38□□□□□ -0.11
TCOF1-214ENST00000515035 MED23Q9ULK4 1368 aa14.38□□□□□ -0.11
TCOF1-214ENST00000515035 MFAP3LO75121 409 aa14.38□□□□□ -0.11
TCOF1-214ENST00000515035 AFPP02771 609 aaKnown RBP14.38□□□□□ -0.11
TCOF1-214ENST00000515035 TRAPPC10P48553 1259 aa14.38□□□□□ -0.11
TCOF1-214ENST00000515035 DYNC1I2Q13409 638 aaKnown RBP14.38□□□□□ -0.11
TCOF1-214ENST00000515035 NLRX1Q86UT6 975 aa14.38□□□□□ -0.11
TCOF1-214ENST00000515035 ARMC2Q8NEN0 867 aa14.38□□□□□ -0.11
TCOF1-214ENST00000515035 KRT82Q9NSB4 513 aa14.38□□□□□ -0.11
TCOF1-214ENST00000515035 KIF1CO43896 1103 aaKnown RBP14.37□□□□□ -0.11
TCOF1-214ENST00000515035 MFAP3P55082 362 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 GRAMD4Q6IC98 578 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 HIPK4Q8NE63 616 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 SERPINI1Q99574 410 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 TRAIPQ9BWF2 469 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 ZBED4O75132 1171 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 CRKLP46109 303 aaKnown RBP14.37□□□□□ -0.11
TCOF1-214ENST00000515035 GTF2IP78347 998 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 MFSD14BQ5SR56 506 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 APOA5Q6Q788 366 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 TTLL7Q6ZT98 887 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 NT5C1BQ96P26 610 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 BEGAINQ9BUH8 593 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.37□□□□□ -0.11
TCOF1-214ENST00000515035 IGSF1Q8N6C5 1336 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 DDAH1O94760 285 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 CPP00450 1065 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 TMOD1P28289 359 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 DEUP1Q05D60 604 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 BIRC2Q13490 618 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 USPL1Q5W0Q7 1092 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 RFX6Q8HWS3 928 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 SDR42E1Q8WUS8 393 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 ZC4H2Q9NQZ6 224 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 CAPN9O14815 690 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 GYG2O15488 501 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 CHGBP05060 677 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 ART3Q13508 389 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 CAPRIN2Q6IMN6 1127 aaKnown RBP14.37□□□□□ -0.11
TCOF1-214ENST00000515035 KIAA1024Q9UPX6 916 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 SLC4A7Q9Y6M7 1214 aa14.37□□□□□ -0.11
TCOF1-214ENST00000515035 ACSL3O95573 720 aa14.36□□□□□ -0.11
TCOF1-214ENST00000515035 NCF2P19878 526 aaPredicted RBP14.36□□□□□ -0.11
TCOF1-214ENST00000515035 LRRC41Q15345 812 aa14.36□□□□□ -0.11
TCOF1-214ENST00000515035 GLE1Q53GS7 698 aaKnown RBP14.36□□□□□ -0.11
TCOF1-214ENST00000515035 THOC1Q96FV9 657 aaKnown RBP14.36□□□□□ -0.11
TCOF1-214ENST00000515035 HESX1Q9UBX0 185 aa14.36□□□□□ -0.11
TCOF1-214ENST00000515035 G3BP2Q9UN86 482 aaKnown RBP14.36□□□□□ -0.11
TCOF1-214ENST00000515035 LRRN2O75325 713 aa14.36□□□□□ -0.11
TCOF1-214ENST00000515035 ECM2O94769 699 aaPredicted RBP14.36□□□□□ -0.11
TCOF1-214ENST00000515035 GOLGA8HP0CJ92 632 aa14.36□□□□□ -0.11
TCOF1-214ENST00000515035 ATICP31939 592 aa14.36□□□□□ -0.11
TCOF1-214ENST00000515035 CYP4A11Q02928 519 aa14.36□□□□□ -0.11
TCOF1-214ENST00000515035 KCNV2Q8TDN2 545 aa14.36□□□□□ -0.11
TCOF1-214ENST00000515035 CCDC124Q96CT7 223 aaKnown RBP14.36□□□□□ -0.11
TCOF1-214ENST00000515035 TRIM11Q96F44 468 aa14.36□□□□□ -0.11
TCOF1-214ENST00000515035 TRIM56Q9BRZ2 755 aaKnown RBP14.36□□□□□ -0.11
TCOF1-214ENST00000515035 THRAP3Q9Y2W1 955 aaKnown RBP14.36□□□□□ -0.11
TCOF1-214ENST00000515035 HDLBPQ00341 1268 aaKnown RBP14.36□□□□□ -0.11
TCOF1-214ENST00000515035 TRIP13Q15645 432 aaPredicted RBP14.36□□□□□ -0.11
TCOF1-214ENST00000515035 TRMT10CQ7L0Y3 403 aaKnown RBP14.36□□□□□ -0.11
TCOF1-214ENST00000515035 ZNF277Q9NRM2 450 aaPredicted RBP14.36□□□□□ -0.11
TCOF1-214ENST00000515035 ABCC12Q96J65 1359 aa14.36□□□□□ -0.11
TCOF1-214ENST00000515035 CCDC188H7C350 402 aa14.36□□□□□ -0.11
TCOF1-214ENST00000515035 SERPING1P05155 500 aa14.36□□□□□ -0.11
TCOF1-214ENST00000515035 RESTQ13127 1097 aa14.36□□□□□ -0.11
TCOF1-214ENST00000515035 XKR9Q5GH70 373 aa14.36□□□□□ -0.11
TCOF1-214ENST00000515035 C10orf76Q5T2E6 689 aa14.36□□□□□ -0.11
TCOF1-214ENST00000515035 A0A0G2JND7 137 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 LAD1O00515 517 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 ATP5HO75947 161 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 TNNC2P02585 160 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 RANBP1P43487 201 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 ODR4Q5SWX8 454 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 TOGARAM2Q6ZUX3 1019 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 TMC4Q7Z404 712 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 RNF26Q9BY78 433 aaPredicted RBP14.35□□□□□ -0.11
TCOF1-214ENST00000515035 GMNCA6NCL1 334 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 CCNE1P24864 410 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 BASP1P80723 227 aaKnown RBP14.35□□□□□ -0.11
TCOF1-214ENST00000515035 KIF22Q14807 665 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 BEND6Q5SZJ8 279 aaPredicted RBP14.35□□□□□ -0.11
TCOF1-214ENST00000515035 FAM47EQ6ZV65 393 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 USP40Q9NVE5 1235 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 ERBB3P21860 1342 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 GFPT2O94808 682 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 PLCB4Q15147 1175 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 PARP9Q8IXQ6 854 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 FAM186BQ8IYM0 893 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 AK8Q96MA6 479 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 STK17AQ9UEE5 414 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 TMTC4Q5T4D3 741 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 PDLIM2Q96JY6 352 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 UPF3AQ9H1J1 476 aaKnown RBP14.35□□□□□ -0.11
TCOF1-214ENST00000515035 THAP9Q9H5L6 903 aa14.35□□□□□ -0.11
TCOF1-214ENST00000515035 PSMC2P35998 433 aaKnown RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms