RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CYP4F22Q6NT55 531 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 STAG2Q8N3U4 1231 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 PASKQ96RG2 1323 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 SETBP1Q9Y6X0 1596 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 E9PMD0 336 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 POC1B-GALNT4F8VUJ3 575 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 RAD17O75943 681 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 CCDC62Q6P9F0 684 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 UNC13DQ70J99 1090 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 NACC1Q96RE7 527 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 UBE2TQ9NPD8 197 aaPredicted RBP13.8□□□□□ -0.2
USP53-209ENST00000514665 FBXO2Q9UK22 296 aaPredicted RBP13.8□□□□□ -0.2
USP53-209ENST00000514665 LRRC53A6NM62 1247 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 ATF2P15336 505 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 POLGP54098 1239 aaPredicted RBP13.79□□□□□ -0.2
USP53-209ENST00000514665 SDCCAG8Q86SQ7 713 aaPredicted RBP13.79□□□□□ -0.2
USP53-209ENST00000514665 IGDCC4Q8TDY8 1250 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 FAM84BQ96KN1 310 aaPredicted RBP13.79□□□□□ -0.2
USP53-209ENST00000514665 PARVGQ9HBI0 331 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.79□□□□□ -0.2
USP53-209ENST00000514665 CDC42BPGQ6DT37 1551 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 IQSEC2Q5JU85 1478 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 POLR1AO95602 1720 aaPredicted RBP13.79□□□□□ -0.2
USP53-209ENST00000514665 CTNND1O60716 968 aaKnown RBP13.79□□□□□ -0.2
USP53-209ENST00000514665 CIB2O75838 187 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 AOC3Q16853 763 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 MIGA2Q7L4E1 593 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 SRBD1Q8N5C6 995 aaKnown RBP13.79□□□□□ -0.2
USP53-209ENST00000514665 PI4KBQ9UBF8 816 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 SSX2IPQ9Y2D8 614 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 GAP43P17677 238 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 PSMD2Q13200 908 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 TNFAIP1Q13829 316 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 GEN1Q17RS7 908 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 MCF2L2Q86YR7 1114 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 HPS3Q969F9 1004 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 RILPQ96NA2 401 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 WDR11Q9BZH6 1224 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 MYO3AQ8NEV4 1616 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 ESYT3A0FGR9 886 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 KCNQ2O43526 872 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 BFSP1Q12934 665 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 CNKSR1Q969H4 720 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 TRPC6Q9Y210 931 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 CD2APQ9Y5K6 639 aa13.79□□□□□ -0.2
USP53-209ENST00000514665 GOLGA8IPA6NC78 632 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 GOLGA8JA6NMD2 632 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 CA8P35219 290 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 LGSNQ5TDP6 509 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.78□□□□□ -0.2
USP53-209ENST00000514665 CHP1Q99653 195 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 CD209Q9NNX6 404 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 RNF14Q9UBS8 474 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 NOVA2Q9UNW9 492 aaKnown RBP13.78□□□□□ -0.2
USP53-209ENST00000514665 hCG_1984214I3L0E3 225 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 PALMO75781 387 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 TMEM191BP0C7N4 346 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 RFX5P48382 616 aaPredicted RBP13.78□□□□□ -0.2
USP53-209ENST00000514665 MXI1P50539 228 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 MFAP3P55082 362 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 SYDE2Q5VT97 1194 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 TBC1D9BQ66K14 1250 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 ZNF713Q8N859 430 aaPredicted RBP13.78□□□□□ -0.2
USP53-209ENST00000514665 KAZALD1Q96I82 304 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 MMS19Q96T76 1030 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 FAM114A2Q9NRY5 505 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 PABPN1LA6NDY0 278 aaKnown RBP13.78□□□□□ -0.2
USP53-209ENST00000514665 FCER1AP12319 257 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 MAPK4P31152 587 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 MAN1A1P33908 653 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 YARSP54577 528 aaKnown RBP13.78□□□□□ -0.2
USP53-209ENST00000514665 GFPT1Q06210 699 aaPredicted RBP13.78□□□□□ -0.2
USP53-209ENST00000514665 PDCLQ13371 301 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 PDIA6Q15084 440 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.78□□□□□ -0.2
USP53-209ENST00000514665 DNAJC17Q9NVM6 304 aaKnown RBP13.78□□□□□ -0.2
USP53-209ENST00000514665 KCNG1Q9UIX4 513 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 BCS1LQ9Y276 419 aa13.78□□□□□ -0.2
USP53-209ENST00000514665 POTEB3A0JP26 581 aa13.77□□□□□ -0.2
USP53-209ENST00000514665 POTECB2RU33 542 aa13.77□□□□□ -0.2
USP53-209ENST00000514665 I3L4J1 428 aa13.77□□□□□ -0.2
USP53-209ENST00000514665 NCK2O43639 380 aa13.77□□□□□ -0.2
USP53-209ENST00000514665 TDP2O95551 362 aa13.77□□□□□ -0.2
USP53-209ENST00000514665 GH2P01242 217 aa13.77□□□□□ -0.2
USP53-209ENST00000514665 STAT2P52630 851 aa13.77□□□□□ -0.2
USP53-209ENST00000514665 PSMD6Q15008 389 aa13.77□□□□□ -0.2
USP53-209ENST00000514665 POTEBQ6S5H4 581 aa13.77□□□□□ -0.2
USP53-209ENST00000514665 CEP170P1Q96L14 293 aa13.77□□□□□ -0.2
USP53-209ENST00000514665 SH3GLB2Q9NR46 395 aa13.77□□□□□ -0.2
USP53-209ENST00000514665 SEPT9Q9UHD8 586 aaPredicted RBP13.77□□□□□ -0.2
USP53-209ENST00000514665 CEP152O94986 1710 aa13.77□□□□□ -0.2
USP53-209ENST00000514665 USP17L10C9JJH3 530 aa13.77□□□□□ -0.21
USP53-209ENST00000514665 RPS6KA4O75676 772 aa13.77□□□□□ -0.21
USP53-209ENST00000514665 ATP2C1P98194 919 aaPredicted RBP13.77□□□□□ -0.21
USP53-209ENST00000514665 TRIP13Q15645 432 aaPredicted RBP13.77□□□□□ -0.21
USP53-209ENST00000514665 NFRKBQ6P4R8 1299 aa13.77□□□□□ -0.21
USP53-209ENST00000514665 MICAL1Q8TDZ2 1067 aa13.77□□□□□ -0.21
USP53-209ENST00000514665 GRK7Q8WTQ7 553 aa13.77□□□□□ -0.21
USP53-209ENST00000514665 P3H4Q92791 437 aa13.77□□□□□ -0.21
USP53-209ENST00000514665 MTA3Q9BTC8 594 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms