RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 H2AFVQ71UI9 128 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 IFT20Q8IY31 132 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 TBCKQ8TEA7 893 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 SPATA33Q96N06 139 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 TTC25Q96NG3 672 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 ACAP3Q96P50 834 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 NAPGQ99747 312 aaPredicted RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 PLCB1Q9NQ66 1216 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 IMPACTQ9P2X3 320 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 LSM7Q9UK45 103 aaKnown RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 PCDHA6Q9UN73 950 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 PCDHA8Q9Y5H6 950 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 I3L4J1 428 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 HOXA2O43364 376 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 KPNA6O60684 536 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 RRAGAQ7L523 313 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 SPDYE1Q8NFV5 336 aaPredicted RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 OR6B3Q8NGW1 331 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 MMTAG2Q9BU76 263 aaKnown RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 VPS33BQ9H267 617 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 RPAP3Q9H6T3 665 aaPredicted RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 STAP2Q9UGK3 403 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 CPSF1Q10570 1443 aaKnown RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 GOLGA8QA0A0J9YX86 632 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 GOLGA8OA6NCC3 632 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 GOLGA8NF8WBI6 632 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 ZBTB5O15062 677 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 MAGEB2O15479 319 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 CIB2O75838 187 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 PRELPP51888 382 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 AP3M2P53677 418 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 TERF1P54274 439 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 RNASE9P60153 205 aaKnown RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 MTMR3Q13615 1198 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 SF3B3Q15393 1217 aaKnown RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 EXOC3L4Q17RC7 722 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 LCORLQ8N3X6 602 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 SH3RF3Q8TEJ3 882 aaPredicted RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 GGA3Q9NZ52 723 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 NDUFB9Q9Y6M9 179 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 CARNS1A5YM72 827 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 HOXC6P09630 235 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 SUPT20HL2P0C7V6 817 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 FANCCQ00597 558 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 DRP2Q13474 957 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 HLFQ16534 295 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 PROSER3Q2NL68 480 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 HHATQ5VTY9 493 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 OR6B2Q6IFH4 312 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 CHST13Q8NET6 341 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 SH3TC2Q8TF17 1288 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 DHTKD1Q96HY7 919 aaPredicted RBP4.61□□□□□ -1.67
VCAN-209ENST00000513016 PRIMPOLQ96LW4 560 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 MTRQ99707 1265 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 ISCA1Q9BUE6 129 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 TEX13BQ9BXU2 312 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 RBSNQ9H1K0 784 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.61□□□□□ -1.67
VCAN-209ENST00000513016 SEPT10Q9P0V9 454 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 DBNLQ9UJU6 430 aaKnown RBP4.61□□□□□ -1.67
VCAN-209ENST00000513016 PFASO15067 1338 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 KDM6AO15550 1401 aaPredicted RBP4.61□□□□□ -1.67
VCAN-209ENST00000513016 RRN3P2A6NIE6 340 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 NBPF26B4DH59 902 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 MYO1FO00160 1098 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 ARHGAP6O43182 974 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 PPFIA4O75335 1185 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 CPT1AP50416 773 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 SLC10A5Q5PT55 438 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 C8orf74Q6P047 294 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 HHIPL2Q6UWX4 724 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 UBLCP1Q8WVY7 318 aaPredicted RBP4.61□□□□□ -1.67
VCAN-209ENST00000513016 PCDHB8Q9UN66 801 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 ABCC12Q96J65 1359 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 NEMP1O14524 444 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 RPN1P04843 607 aaKnown RBP4.61□□□□□ -1.67
VCAN-209ENST00000513016 CPA1P15085 419 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 CYP2B6P20813 491 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 ST8SIA6P61647 398 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 HDLBPQ00341 1268 aaKnown RBP4.61□□□□□ -1.67
VCAN-209ENST00000513016 PTGDRQ13258 359 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 SNX17Q15036 470 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 KARSQ15046 597 aaKnown RBP4.61□□□□□ -1.67
VCAN-209ENST00000513016 ARHGAP15Q53QZ3 475 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 PPP4R3CPQ6ZMV5 832 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 NOP9Q86U38 636 aaKnown RBP4.61□□□□□ -1.67
VCAN-209ENST00000513016 CEP57Q86XR8 500 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 TBC1D16Q8TBP0 767 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 GBA2Q9HCG7 927 aaPredicted RBP4.61□□□□□ -1.67
VCAN-209ENST00000513016 ZSWIM6Q9HCJ5 1215 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 MOSPD1Q9UJG1 213 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 NFE2L3Q9Y4A8 694 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 USP31Q70CQ4 1352 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 CHD1O14646 1710 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 A0A0D9SFI3 127 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 A6NNZ2 444 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 ASAP2O43150 1006 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 P4HBP07237 508 aaKnown RBP4.61□□□□□ -1.67
VCAN-209ENST00000513016 CPB1P15086 417 aa4.61□□□□□ -1.67
VCAN-209ENST00000513016 CMA1P23946 247 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms