RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 LGR5O75473 907 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 SMIM10L2AP0DMW4 78 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 SMIM10L2BP0DMW5 78 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 RXRAP19793 462 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 POU3F3P20264 500 aaPredicted RBP13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 MCM5P33992 734 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 THPOP40225 353 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 NEDD9Q14511 834 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 SKIV2LQ15477 1246 aaKnown RBP13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 USP17L6PQ6QN14 398 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 METTL7BQ6UX53 244 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 IL27Q8NEV9 243 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 CUL5Q93034 780 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 ATP6V0A1Q93050 837 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 TMEM87BQ96K49 555 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 ESYT1Q9BSJ8 1104 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 MTA3Q9BTC8 594 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 TUT1Q9H6E5 874 aaKnown RBP13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 NLRC5Q86WI3 1866 aa13.31□□□□□ -0.28
HMGCS1-204ENST00000507293 CCDC69A6NI79 296 aa13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 PIK3CDO00329 1044 aa13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 MEIS2O14770 477 aa13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 SLC27A2O14975 620 aa13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 EFCAB14O75071 495 aa13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 SMARCA1P28370 1054 aa13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 HOXC8P31273 242 aa13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 GNAQP50148 359 aa13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 GRB10Q13322 594 aa13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 IKBKEQ14164 716 aa13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 PCNX4Q63HM2 1172 aa13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 FAM117BQ6P1L5 589 aa13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 CYFIP1Q7L576 1253 aa13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 TRIM50Q86XT4 487 aa13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 RAB11FIP4Q86YS3 637 aa13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 CMTR1Q8N1G2 835 aaKnown RBP13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 SRBD1Q8N5C6 995 aaKnown RBP13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 GPR20Q99678 358 aa13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 LZTS2Q9BRK4 669 aa13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 TELO2Q9Y4R8 837 aa13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 EMSYQ7Z589 1322 aa13.3□□□□□ -0.28
HMGCS1-204ENST00000507293 CHD7Q9P2D1 2997 aa13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 TTC28Q96AY4 2481 aa13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 RSPH10B2B2RC85 870 aa13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 TREHO43280 583 aa13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 LPXNO60711 386 aa13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 GJB5O95377 273 aa13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 RSPH10BP0C881 870 aa13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 CALM1P0DP23 149 aa13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 CALM2P0DP24 149 aa13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 CALM3P0DP25 149 aa13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 SP4Q02446 784 aa13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 TFF2Q03403 129 aa13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 UTP14CQ5TAP6 766 aaKnown RBP13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 CREB3L3Q68CJ9 461 aa13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.29□□□□□ -0.284e-9■□□□□ 9.5
HMGCS1-204ENST00000507293 DBF4BQ8NFT6 615 aa13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 GDPD5Q8WTR4 605 aa13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 UHRF1Q96T88 793 aaPredicted RBP13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 USP26Q9BXU7 913 aa13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 LRRC2Q9BYS8 371 aa13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 RNPEPQ9H4A4 650 aa13.29□□□□□ -0.28
HMGCS1-204ENST00000507293 hCG_1642624A0A1W2PR95 340 aa13.28□□□□□ -0.28
HMGCS1-204ENST00000507293 CTSHP09668 335 aa13.28□□□□□ -0.28
HMGCS1-204ENST00000507293 LIFRP42702 1097 aa13.28□□□□□ -0.28
HMGCS1-204ENST00000507293 KCNQ1P51787 676 aa13.28□□□□□ -0.28
HMGCS1-204ENST00000507293 MKRN4PQ13434 485 aaPredicted RBP13.28□□□□□ -0.28
HMGCS1-204ENST00000507293 UBE2SQ16763 222 aa13.28□□□□□ -0.28
HMGCS1-204ENST00000507293 XRRA1Q6P2D8 792 aa13.28□□□□□ -0.28
HMGCS1-204ENST00000507293 NLRX1Q86UT6 975 aa13.28□□□□□ -0.28
HMGCS1-204ENST00000507293 TMTC2Q8N394 836 aa13.28□□□□□ -0.28
HMGCS1-204ENST00000507293 RAD9AQ99638 391 aa13.28□□□□□ -0.28
HMGCS1-204ENST00000507293 ANO2Q9NQ90 1003 aa13.28□□□□□ -0.28
HMGCS1-204ENST00000507293 SETD4Q9NVD3 440 aa13.28□□□□□ -0.28
HMGCS1-204ENST00000507293 ZNF215Q9UL58 517 aaPredicted RBP13.28□□□□□ -0.28
HMGCS1-204ENST00000507293 MTUS1Q9ULD2 1270 aa13.28□□□□□ -0.28
HMGCS1-204ENST00000507293 SLC12A7Q9Y666 1083 aa13.28□□□□□ -0.28
HMGCS1-204ENST00000507293 RALGAPA2Q2PPJ7 1873 aa13.27□□□□□ -0.28
HMGCS1-204ENST00000507293 LINC01553A4QN01 128 aa13.27□□□□□ -0.29
HMGCS1-204ENST00000507293 AMHP03971 560 aa13.27□□□□□ -0.29
HMGCS1-204ENST00000507293 NECTIN1Q15223 517 aa13.27□□□□□ -0.29
HMGCS1-204ENST00000507293 AAK1Q2M2I8 961 aa13.27□□□□□ -0.29
HMGCS1-204ENST00000507293 PLEKHG4Q58EX7 1191 aa13.27□□□□□ -0.29
HMGCS1-204ENST00000507293 TMTC3Q6ZXV5 915 aa13.27□□□□□ -0.29
HMGCS1-204ENST00000507293 SKAP1Q86WV1 359 aa13.27□□□□□ -0.29
HMGCS1-204ENST00000507293 MICU3Q86XE3 530 aa13.27□□□□□ -0.29
HMGCS1-204ENST00000507293 MYOCDQ8IZQ8 938 aa13.27□□□□□ -0.29
HMGCS1-204ENST00000507293 CCDC82Q8N4S0 544 aa13.27□□□□□ -0.29
HMGCS1-204ENST00000507293 GPRASP2Q96D09 838 aa13.27□□□□□ -0.29
HMGCS1-204ENST00000507293 NECAB3Q96P71 396 aaPredicted RBP13.27□□□□□ -0.29
HMGCS1-204ENST00000507293 TGS1Q96RS0 853 aaKnown RBP13.27□□□□□ -0.29
HMGCS1-204ENST00000507293 SENP7Q9BQF6 1050 aa13.27□□□□□ -0.29
HMGCS1-204ENST00000507293 OSBPL7Q9BZF2 842 aa13.27□□□□□ -0.29
HMGCS1-204ENST00000507293 PSTPIP2Q9H939 334 aa13.27□□□□□ -0.29
HMGCS1-204ENST00000507293 VCANP13611 3396 aa13.26□□□□□ -0.29
HMGCS1-204ENST00000507293 ATP9AO75110 1047 aa13.26□□□□□ -0.29
HMGCS1-204ENST00000507293 CAND2O75155 1236 aa13.26□□□□□ -0.29
HMGCS1-204ENST00000507293 GNAT1P11488 350 aa13.26□□□□□ -0.29
HMGCS1-204ENST00000507293 BMP1P13497 986 aa13.26□□□□□ -0.29
HMGCS1-204ENST00000507293 KCNA2P16389 499 aa13.26□□□□□ -0.29
HMGCS1-204ENST00000507293 TCF7P36402 384 aaPredicted RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms