RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 TRIM6Q9C030 488 aaPredicted RBP18.78■□□□□ 0.6
SQSTM1-211ENST00000506690 NOVA2Q9UNW9 492 aaKnown RBP18.78■□□□□ 0.6
SQSTM1-211ENST00000506690 MYH7BA7E2Y1 1941 aa18.77■□□□□ 0.6
SQSTM1-211ENST00000506690 NEBLO76041 1014 aa18.77■□□□□ 0.6
SQSTM1-211ENST00000506690 LRCH2Q5VUJ6 765 aa18.77■□□□□ 0.6
SQSTM1-211ENST00000506690 LRRC55Q6ZSA7 311 aa18.77■□□□□ 0.6
SQSTM1-211ENST00000506690 DAGLBQ8NCG7 672 aa18.77■□□□□ 0.6
SQSTM1-211ENST00000506690 NOD2Q9HC29 1040 aa18.77■□□□□ 0.6
SQSTM1-211ENST00000506690 CEP72Q9P209 647 aa18.77■□□□□ 0.6
SQSTM1-211ENST00000506690 BCCIPQ9P287 314 aaKnown RBP eCLIP18.77■□□□□ 0.6
SQSTM1-211ENST00000506690 FBXL5Q9UKA1 691 aa18.77■□□□□ 0.6
SQSTM1-211ENST00000506690 CACNA1SQ13698 1873 aa18.77■□□□□ 0.59
SQSTM1-211ENST00000506690 PHF20L1A8MW92 1017 aa18.76■□□□□ 0.59
SQSTM1-211ENST00000506690 DCDC2CA8MYV0 355 aa18.76■□□□□ 0.59
SQSTM1-211ENST00000506690 SLC18A3Q16572 532 aa18.76■□□□□ 0.59
SQSTM1-211ENST00000506690 SFMBT2Q5VUG0 894 aa18.76■□□□□ 0.59
SQSTM1-211ENST00000506690 CPLX4Q7Z7G2 160 aa18.76■□□□□ 0.59
SQSTM1-211ENST00000506690 DDX42Q86XP3 938 aaKnown RBP eCLIP18.76■□□□□ 0.59
SQSTM1-211ENST00000506690 HOOK2Q96ED9 719 aa18.76■□□□□ 0.59
SQSTM1-211ENST00000506690 NOL4O94818 638 aa18.76■□□□□ 0.59
SQSTM1-211ENST00000506690 KIF5BP33176 963 aa18.76■□□□□ 0.59
SQSTM1-211ENST00000506690 MAGOHP61326 146 aaKnown RBP18.76■□□□□ 0.59
SQSTM1-211ENST00000506690 LRRC63Q05C16 580 aa18.76■□□□□ 0.59
SQSTM1-211ENST00000506690 GUF1Q8N442 669 aaKnown RBP18.76■□□□□ 0.59
SQSTM1-211ENST00000506690 ANKS1AQ92625 1134 aa18.76■□□□□ 0.59
SQSTM1-211ENST00000506690 CUL5Q93034 780 aa18.76■□□□□ 0.59
SQSTM1-211ENST00000506690 MAGOHBQ96A72 148 aaKnown RBP18.76■□□□□ 0.59
SQSTM1-211ENST00000506690 SWAP70Q9UH65 585 aa18.76■□□□□ 0.59
SQSTM1-211ENST00000506690 ATP6V0A2Q9Y487 856 aa18.76■□□□□ 0.59
SQSTM1-211ENST00000506690 AHDC1Q5TGY3 1603 aaPredicted RBP18.76■□□□□ 0.59
SQSTM1-211ENST00000506690 ATP2C2O75185 946 aa18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 ECM2O94769 699 aaPredicted RBP18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 MSL1Q68DK7 614 aa18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 ACTRT1Q8TDG2 376 aa18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 CENPTQ96BT3 561 aa18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 CALR3Q96L12 384 aaKnown RBP18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 EBF2Q9HAK2 575 aa18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 NLRC4Q9NPP4 1024 aa18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 A0A1B0GUL6 1792 aa18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 CCT8L1PA6NM43 557 aa18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 TRIM37O94972 964 aa18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 GBP2P32456 591 aaPredicted RBP18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 FLT3P36888 993 aa18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 DYNLL1P63167 89 aaKnown RBP18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 KIAA0753Q2KHM9 967 aa18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 FAM83BQ5T0W9 1011 aa18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 ERMARDQ5T6L9 678 aa18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 RCSD1Q6JBY9 416 aa18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 CRELD2Q6UXH1 353 aaPredicted RBP18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 UBLCP1Q8WVY7 318 aaPredicted RBP18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 TBC1D5Q92609 795 aa18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 TAF4BQ92750 862 aa18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 CNOT10Q9H9A5 744 aaKnown RBP18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 NUP98P52948 1817 aa18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 MYH4Q9Y623 1939 aa18.75■□□□□ 0.59
SQSTM1-211ENST00000506690 KCNK3O14649 394 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 RPS6KA1Q15418 735 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 ACCSLQ4AC99 568 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 GALNT17Q6IS24 598 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 CHMP6Q96FZ7 201 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 PBKQ96KB5 322 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 MMTAG2Q9BU76 263 aaKnown RBP18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 ABCF2Q9UG63 623 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 SHANK3Q9BYB0 1731 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 CASZ1Q86V15 1759 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 A0A087X0T9 212 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 BTNL10A8MVZ5 291 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 USP17L12C9JPN9 530 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 USP17L21D6R901 530 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 SART1O43290 800 aaKnown RBP18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 PPP1R12BO60237 982 aaPredicted RBP18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 STARD3NLO95772 234 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 OR52Z1P0C646 297 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 FAM228BP0C875 321 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 EVX2Q03828 476 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 RIPK1Q13546 671 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 FAM47AQ5JRC9 791 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 UNC13DQ70J99 1090 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 TMC3Q7Z5M5 1100 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 TLCD1Q96CP7 247 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 PACSIN1Q9BY11 444 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 SLC12A4Q9UP95 1085 aa18.74■□□□□ 0.59
SQSTM1-211ENST00000506690 PVALEFA0A1B0GWK0 134 aa18.73■□□□□ 0.59
SQSTM1-211ENST00000506690 KIF4AO95239 1232 aa18.73■□□□□ 0.59
SQSTM1-211ENST00000506690 GSTA1P08263 222 aa18.73■□□□□ 0.59
SQSTM1-211ENST00000506690 RPSAP08865 295 aaKnown RBP18.73■□□□□ 0.59
SQSTM1-211ENST00000506690 USP11P51784 963 aa18.73■□□□□ 0.59
SQSTM1-211ENST00000506690 HIBCHQ6NVY1 386 aaPredicted RBP18.73■□□□□ 0.59
SQSTM1-211ENST00000506690 RSRC1Q96IZ7 334 aaKnown RBP18.73■□□□□ 0.59
SQSTM1-211ENST00000506690 XPO6Q96QU8 1125 aaKnown RBP18.73■□□□□ 0.59
SQSTM1-211ENST00000506690 PSMD1Q99460 953 aa18.73■□□□□ 0.59
SQSTM1-211ENST00000506690 FRMD3A2A2Y4 597 aa18.73■□□□□ 0.59
SQSTM1-211ENST00000506690 ZBTB48P10074 688 aaPredicted RBP18.73■□□□□ 0.59
SQSTM1-211ENST00000506690 NAA25Q14CX7 972 aa18.73■□□□□ 0.59
SQSTM1-211ENST00000506690 PPP1R7Q15435 360 aa18.73■□□□□ 0.59
SQSTM1-211ENST00000506690 FOXR2Q6PJQ5 311 aa18.73■□□□□ 0.59
SQSTM1-211ENST00000506690 AEBP2Q6ZN18 517 aaPredicted RBP18.73■□□□□ 0.59
SQSTM1-211ENST00000506690 CCDC197Q8NCU1 140 aa18.73■□□□□ 0.59
SQSTM1-211ENST00000506690 SEC14L1Q92503 715 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms