RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 SP2Q02086 613 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 CEBPZQ03701 1054 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 RESTQ13127 1097 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 LAMC2Q13753 1193 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 NBR1Q14596 966 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 GNASQ5JWF2 1037 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 CELF3Q5SZQ8 465 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 TMEM63BQ5T3F8 832 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 LRCH2Q5VUJ6 765 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 RNF180Q86T96 592 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 SLFN12Q8IYM2 578 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 ARRDC4Q8NCT1 418 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 CRYGNQ8WXF5 182 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 VTI1AQ96AJ9 217 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 ABHD8Q96I13 439 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 ZNF396Q96N95 335 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 SENP7Q9BQF6 1050 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 TEKT3Q9BXF9 490 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 AGO4Q9HCK5 861 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 PAK6Q9NQU5 681 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 TBC1D22BQ9NU19 505 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 SLC9A2Q9UBY0 812 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 CEP131Q9UPN4 1083 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 GNEQ9Y223 722 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 Q9Y3F1 56 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 PCDHB6Q9Y5E3 794 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 ATP6V1DQ9Y5K8 247 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 KBTBD13C9JR72 458 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 TBX3O15119 743 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 ADCY6O43306 1168 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 CHMP2AO43633 222 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 EDIL3O43854 480 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 GAS7O60861 476 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 BRD1O95696 1058 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 GJB1P08034 283 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 MYL3P08590 195 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 KCNA2P16389 499 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 NCLP19338 710 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 PTGS1P23219 599 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 TXKP42681 527 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 TOB1P50616 345 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 CHMP4BP1P59074 171 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 BEX3Q00994 111 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 SEMA3FQ13275 785 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 ORC2Q13416 577 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 SF3A1Q15459 793 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 TMEM266Q2M3C6 531 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 LHX8Q68G74 356 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 FAM173BQ6P4H8 233 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 CCDC62Q6P9F0 684 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 METTL7BQ6UX53 244 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 U2AF1L4Q8WU68 220 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 GJA10Q969M2 543 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 FAM20AQ96MK3 541 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 JPH1Q9HDC5 661 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 NFASCO94856 1347 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 SYNRGQ9UMZ2 1314 aa9.28□□□□□ -0.92
LIMCH1-206ENST00000505705 MCM3APO60318 1980 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 SPDYE4A6NLX3 237 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 WNT7AO00755 349 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 FARP2O94887 1054 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 BMP15O95972 392 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 OR52Z1P0C646 297 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 TECP42680 631 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 GJA8P48165 433 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 GJA9P57773 515 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 KRT76Q01546 638 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 PTGDRQ13258 359 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 ITGB3BPQ13352 177 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 FSCN1Q16658 493 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 DGKDQ16760 1214 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 UTP14CQ5TAP6 766 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 NCAPH2Q6IBW4 605 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 PCSK9Q8NBP7 692 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 PPTC7Q8NI37 304 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 AFG1LQ8WV93 481 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 SEPT1Q8WYJ6 367 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 LENG9Q96B70 501 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 MBOAT7Q96N66 472 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 RIT2Q99578 217 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 AZI2Q9H6S1 392 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 BCAS3Q9H6U6 928 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 TTC12Q9H892 705 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 CHMP5Q9NZZ3 219 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 TFIP11Q9UBB9 837 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 CFAP45Q9UL16 551 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 PCDHA12Q9UN75 941 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 FARP1Q9Y4F1 1045 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 MYH7BA7E2Y1 1941 aa9.27□□□□□ -0.93
LIMCH1-206ENST00000505705 LAD1O00515 517 aa9.26□□□□□ -0.93
LIMCH1-206ENST00000505705 BACH1O14867 736 aa9.26□□□□□ -0.93
LIMCH1-206ENST00000505705 PSAPP07602 524 aa9.26□□□□□ -0.93
LIMCH1-206ENST00000505705 MMP3P08254 477 aa9.26□□□□□ -0.93
LIMCH1-206ENST00000505705 ARHGAP1Q07960 439 aa9.26□□□□□ -0.93
LIMCH1-206ENST00000505705 STK38Q15208 465 aa9.26□□□□□ -0.93
LIMCH1-206ENST00000505705 LRRC41Q15345 812 aa9.26□□□□□ -0.93
LIMCH1-206ENST00000505705 KCNA10Q16322 511 aa9.26□□□□□ -0.93
LIMCH1-206ENST00000505705 HSDL1Q3SXM5 330 aa9.26□□□□□ -0.93
LIMCH1-206ENST00000505705 MIS18BP1Q6P0N0 1132 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms