RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, human

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-208	ENST00000504489	SENP7	Q9BQF6	1050 aa		13.54	□□□□□ -0.24
PDLIM5-208	ENST00000504489	AP5M1	Q9H0R1	490 aa		13.54	□□□□□ -0.24
PDLIM5-208	ENST00000504489	SPC25	Q9HBM1	224 aa		13.54	□□□□□ -0.24
PDLIM5-208	ENST00000504489	SYNRG	Q9UMZ2	1314 aa		13.54	□□□□□ -0.24
PDLIM5-208	ENST00000504489		H3BQV1	296 aa		13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	CTAGE5	O15320	804 aa		13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	DYNC1LI2	O43237	492 aa	Predicted RBP	13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	PGK1	P00558	417 aa		13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	GH1	P01241	217 aa		13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	EN2	P19622	333 aa	Predicted RBP	13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	CST5	P28325	142 aa	Predicted RBP	13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	SP2	Q02086	613 aa		13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	ARHGAP1	Q07960	439 aa		13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	LAMC2	Q13753	1193 aa		13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	NEDD9	Q14511	834 aa		13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	LRRC41	Q15345	812 aa		13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	CELF3	Q5SZQ8	465 aa	Known RBP	13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	IFFO2	Q5TF58	517 aa		13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	RNF180	Q86T96	592 aa		13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	PLA2G4D	Q86XP0	818 aa		13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	GIMAP8	Q8ND71	665 aa	Predicted RBP	13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	COPS5	Q92905	334 aa		13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	EMID1	Q96A84	441 aa	Predicted RBP	13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	RNF25	Q96BH1	459 aa	Predicted RBP	13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	MBOAT7	Q96N66	472 aa		13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	NAP1L4	Q99733	375 aa	Known RBP	13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	KCNH7	Q9NS40	1196 aa		13.53	□□□□□ -0.24
PDLIM5-208	ENST00000504489	FAM205C	A6NFA0	338 aa		13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	DNM1L	O00429	736 aa		13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	C6orf222	P0C671	652 aa	Predicted RBP	13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	AR	P10275	920 aa		13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	GCFC2	P16383	781 aa	Known RBP	13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	KCNA2	P16389	499 aa		13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	UBA1	P22314	1058 aa	Known RBP	13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	PTGS1	P23219	599 aa		13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	SOX10	P56693	466 aa		13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	SET	Q01105	290 aa	Predicted RBP	13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	GNL2	Q13823	731 aa	Known RBP	13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489		Q4G0T1	1027 aa		13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	MYSM1	Q5VVJ2	828 aa		13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	PPP4R3A	Q6IN85	833 aa		13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	NOSTRIN	Q8IVI9	506 aa		13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	DHX37	Q8IY37	1157 aa	Known RBP	13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	PDCD7	Q8N8D1	485 aa	Known RBP	13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	OR6J1	Q8NGC5	347 aa		13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	LENG9	Q96B70	501 aa		13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	TSEN34	Q9BSV6	310 aa	Known RBP	13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	EVPL	Q92817	2033 aa		13.52	□□□□□ -0.25
PDLIM5-208	ENST00000504489	NFASC	O94856	1347 aa		13.51	□□□□□ -0.25
PDLIM5-208	ENST00000504489		A6NJR5	290 aa		13.51	□□□□□ -0.25
PDLIM5-208	ENST00000504489	KIF28P	B7ZC32	967 aa		13.51	□□□□□ -0.25
PDLIM5-208	ENST00000504489	ATP9A	O75110	1047 aa		13.51	□□□□□ -0.25
PDLIM5-208	ENST00000504489	GGPS1	O95749	300 aa		13.51	□□□□□ -0.25
PDLIM5-208	ENST00000504489	PDIA4	P13667	645 aa	Known RBP	13.51	□□□□□ -0.25
PDLIM5-208	ENST00000504489	SYT1	P21579	422 aa		13.51	□□□□□ -0.25
PDLIM5-208	ENST00000504489	CPT1A	P50416	773 aa		13.51	□□□□□ -0.25
PDLIM5-208	ENST00000504489	FSCN1	Q16658	493 aa	Known RBP	13.51	□□□□□ -0.25
PDLIM5-208	ENST00000504489	LETM2	Q2VYF4	491 aa		13.51	□□□□□ -0.25
PDLIM5-208	ENST00000504489	PRR16	Q569H4	304 aa		13.51	□□□□□ -0.25
PDLIM5-208	ENST00000504489	GNAS	Q5JWF2	1037 aa		13.51	□□□□□ -0.25
PDLIM5-208	ENST00000504489	CCSAP	Q6IQ19	270 aa	Predicted RBP	13.51	□□□□□ -0.25
PDLIM5-208	ENST00000504489	PCSK9	Q8NBP7	692 aa	Known RBP	13.51	□□□□□ -0.25
PDLIM5-208	ENST00000504489	AGO4	Q9HCK5	861 aa	Known RBP	13.51	□□□□□ -0.25
PDLIM5-208	ENST00000504489	DNAH12	Q6ZR08	3092 aa		13.5	□□□□□ -0.25
PDLIM5-208	ENST00000504489	MYADML2	A6NDP7	307 aa		13.5	□□□□□ -0.25
PDLIM5-208	ENST00000504489	KBTBD13	C9JR72	458 aa		13.5	□□□□□ -0.25
PDLIM5-208	ENST00000504489	IPO5	O00410	1097 aa	Known RBP	13.5	□□□□□ -0.25
PDLIM5-208	ENST00000504489	ZEB2	O60315	1214 aa		13.5	□□□□□ -0.25
PDLIM5-208	ENST00000504489	KPNA6	O60684	536 aa		13.5	□□□□□ -0.25
PDLIM5-208	ENST00000504489	FARP2	O94887	1054 aa	Predicted RBP	13.5	□□□□□ -0.25
PDLIM5-208	ENST00000504489	TDP2	O95551	362 aa		13.5	□□□□□ -0.25
PDLIM5-208	ENST00000504489	TRAPPC10	P48553	1259 aa		13.5	□□□□□ -0.25
PDLIM5-208	ENST00000504489	KCNA10	Q16322	511 aa		13.5	□□□□□ -0.25
PDLIM5-208	ENST00000504489	BRDT	Q58F21	947 aa	Predicted RBP	13.5	□□□□□ -0.25
PDLIM5-208	ENST00000504489	MCTP1	Q6DN14	999 aa		13.5	□□□□□ -0.25
PDLIM5-208	ENST00000504489	METTL7B	Q6UX53	244 aa		13.5	□□□□□ -0.25
PDLIM5-208	ENST00000504489	CYFIP1	Q7L576	1253 aa		13.5	□□□□□ -0.25
PDLIM5-208	ENST00000504489	UBE2Q1	Q7Z7E8	422 aa		13.5	□□□□□ -0.25
PDLIM5-208	ENST00000504489	PPTC7	Q8NI37	304 aa		13.5	□□□□□ -0.25
PDLIM5-208	ENST00000504489	AFG1L	Q8WV93	481 aa		13.5	□□□□□ -0.25
PDLIM5-208	ENST00000504489	MLXIP	Q9HAP2	919 aa		13.5	□□□□□ -0.25
PDLIM5-208	ENST00000504489	DDX25	Q9UHL0	483 aa	Known RBP	13.5	□□□□□ -0.25
PDLIM5-208	ENST00000504489	LOXHD1	Q8IVV2	1947 aa		13.49	□□□□□ -0.25
PDLIM5-208	ENST00000504489	VPS37C	A5D8V6	355 aa	Predicted RBP	13.49	□□□□□ -0.25
PDLIM5-208	ENST00000504489	MOXD2P	A6NHM9	499 aa		13.49	□□□□□ -0.25
PDLIM5-208	ENST00000504489	MSH4	O15457	936 aa		13.49	□□□□□ -0.25
PDLIM5-208	ENST00000504489	STX6	O43752	255 aa		13.49	□□□□□ -0.25
PDLIM5-208	ENST00000504489	CCNT1	O60563	726 aa	Known RBP	13.49	□□□□□ -0.25
PDLIM5-208	ENST00000504489	COL6A1	P12109	1028 aa		13.49	□□□□□ -0.25
PDLIM5-208	ENST00000504489	HOXD8	P13378	290 aa	Predicted RBP	13.49	□□□□□ -0.25
PDLIM5-208	ENST00000504489	BEX3	Q00994	111 aa		13.49	□□□□□ -0.25
PDLIM5-208	ENST00000504489	ITGB3BP	Q13352	177 aa	Predicted RBP	13.49	□□□□□ -0.25
PDLIM5-208	ENST00000504489	SLC5A5	Q92911	643 aa		13.49	□□□□□ -0.25
PDLIM5-208	ENST00000504489	SPATA33	Q96N06	139 aa		13.49	□□□□□ -0.25
PDLIM5-208	ENST00000504489	SDF4	Q9BRK5	362 aa		13.49	□□□□□ -0.25
PDLIM5-208	ENST00000504489	ZNF577	Q9BSK1	485 aa		13.49	□□□□□ -0.25
PDLIM5-208	ENST00000504489	BCAS3	Q9H6U6	928 aa		13.49	□□□□□ -0.25
PDLIM5-208	ENST00000504489	TBC1D22B	Q9NU19	505 aa		13.49	□□□□□ -0.25
PDLIM5-208	ENST00000504489	NOL7	Q9UMY1	257 aa	Known RBP	13.49	□□□□□ -0.25
PDLIM5-208	ENST00000504489	PHF24	Q9UPV7	400 aa		13.49	□□□□□ -0.25

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