RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 TUBA3CQ13748 450 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 SMC1AQ14683 1233 aaKnown RBP5.66□□□□□ -1.5
USP54-216ENST00000498143 TRIM68Q6AZZ1 485 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.66□□□□□ -1.5
USP54-216ENST00000498143 CEP57Q86XR8 500 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 TRIM42Q8IWZ5 723 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 NDUFAF2Q8N183 169 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 EDAQ92838 391 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 PNMA5Q96PV4 448 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 API5Q9BZZ5 524 aaKnown RBP5.66□□□□□ -1.5
USP54-216ENST00000498143 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.66□□□□□ -1.5
USP54-216ENST00000498143 DKK3Q9UBP4 350 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 SEL1LQ9UBV2 794 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 CEP131Q9UPN4 1083 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 ATP6V1DQ9Y5K8 247 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 ANKRD11Q6UB99 2663 aaPredicted RBP5.66□□□□□ -1.5
USP54-216ENST00000498143 UTYO14607 1347 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 ARHGEF28Q8N1W1 1705 aaKnown RBP5.66□□□□□ -1.5
USP54-216ENST00000498143 TREHO43280 583 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 PPFIA4O75335 1185 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 ELF1P32519 619 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 CPT1AP50416 773 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 COG2Q14746 738 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 PAN2Q504Q3 1202 aaKnown RBP5.66□□□□□ -1.5
USP54-216ENST00000498143 PRAMEF19Q5SWL8 479 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 SNRNP48Q6IEG0 339 aaKnown RBP5.66□□□□□ -1.5
USP54-216ENST00000498143 CPLX2Q6PUV4 134 aaKnown RBP5.66□□□□□ -1.5
USP54-216ENST00000498143 CXCL17Q6UXB2 119 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 HOOK3Q86VS8 718 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 ZNF354CQ86Y25 554 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 TTC30BQ8N4P2 665 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 KIAA1524Q8TCG1 905 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 NECTIN4Q96NY8 510 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 PDLIM7Q9NR12 457 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 ETAA1Q9NY74 926 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 ADORA2AP29274 412 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 TECP42680 631 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 ACLYP53396 1101 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 SNX16P57768 344 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 RHBDL3P58872 404 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 MCCD1P59942 119 aaPredicted RBP5.66□□□□□ -1.5
USP54-216ENST00000498143 ZNF200P98182 395 aaPredicted RBP5.66□□□□□ -1.5
USP54-216ENST00000498143 CHRNDQ07001 517 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 GRB10Q13322 594 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 INAQ16352 499 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 HAUS6Q7Z4H7 955 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 ZNF444Q8N0Y2 327 aaPredicted RBP5.66□□□□□ -1.5
USP54-216ENST00000498143 KREMEN2Q8NCW0 462 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 NSUN7Q8NE18 718 aaKnown RBP5.66□□□□□ -1.5
USP54-216ENST00000498143 DHX38Q92620 1227 aaKnown RBP5.66□□□□□ -1.5
USP54-216ENST00000498143 IL17RAQ96F46 866 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 DENND2AQ9ULE3 1009 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 LUC7L2Q9Y383 392 aaKnown RBP5.66□□□□□ -1.5
USP54-216ENST00000498143 ITSN1Q15811 1721 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 GOLGA8CPA6NN73 597 aa5.65□□□□□ -1.5
USP54-216ENST00000498143 IDH1O75874 414 aaKnown RBP5.65□□□□□ -1.5
USP54-216ENST00000498143 RHOXF2BP0C7M4 288 aa5.65□□□□□ -1.5
USP54-216ENST00000498143 XRCC5P13010 732 aaKnown RBP5.65□□□□□ -1.5
USP54-216ENST00000498143 U2AF2P26368 475 aaKnown RBP eCLIP5.65□□□□□ -1.5
USP54-216ENST00000498143 GYG1P46976 350 aa5.65□□□□□ -1.5
USP54-216ENST00000498143 NUBP1P53384 320 aa5.65□□□□□ -1.5
USP54-216ENST00000498143 SFSWAPQ12872 951 aaKnown RBP5.65□□□□□ -1.5
USP54-216ENST00000498143 MB21D1Q8N884 522 aa5.65□□□□□ -1.5
USP54-216ENST00000498143 AFG1LQ8WV93 481 aa5.65□□□□□ -1.5
USP54-216ENST00000498143 SAAL1Q96ER3 474 aa5.65□□□□□ -1.5
USP54-216ENST00000498143 RHOXF2Q9BQY4 288 aa5.65□□□□□ -1.5
USP54-216ENST00000498143 TTYH1Q9H313 450 aaPredicted RBP5.65□□□□□ -1.5
USP54-216ENST00000498143 GDPD2Q9HCC8 539 aa5.65□□□□□ -1.5
USP54-216ENST00000498143 SSUH2Q9Y2M2 353 aa5.65□□□□□ -1.5
USP54-216ENST00000498143 USP17L12C9JPN9 530 aa5.65□□□□□ -1.5
USP54-216ENST00000498143 USP17L21D6R901 530 aa5.65□□□□□ -1.5
USP54-216ENST00000498143 TPP2P29144 1249 aaPredicted RBP5.65□□□□□ -1.5
USP54-216ENST00000498143 PLCB4Q15147 1175 aa5.65□□□□□ -1.5
USP54-216ENST00000498143 TOMM20Q15388 145 aa5.65□□□□□ -1.5
USP54-216ENST00000498143 CCDC121Q6ZUS5 278 aa5.65□□□□□ -1.5
USP54-216ENST00000498143 CABP7Q86V35 215 aa5.65□□□□□ -1.5
USP54-216ENST00000498143 HERC6Q8IVU3 1022 aa5.65□□□□□ -1.5
USP54-216ENST00000498143 OR6J1Q8NGC5 347 aa5.65□□□□□ -1.5
USP54-216ENST00000498143 C7orf43Q8WVR3 580 aa5.65□□□□□ -1.5
USP54-216ENST00000498143 EFHD2Q96C19 240 aaPredicted RBP5.65□□□□□ -1.5
USP54-216ENST00000498143 ZNF396Q96N95 335 aaPredicted RBP5.65□□□□□ -1.5
USP54-216ENST00000498143 UNC79Q9P2D8 2635 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 DENND3A2RUS2 1198 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 ARVCFO00192 962 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 FIBPO43427 364 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 GDF11O95390 407 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 STAT3P40763 770 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 RARSP54136 660 aaKnown RBP5.65□□□□□ -1.51
USP54-216ENST00000498143 NCBP1Q09161 790 aaKnown RBP5.65□□□□□ -1.51
USP54-216ENST00000498143 ITGA7Q13683 1181 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 PPP2R5BQ15173 497 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 ANGPT1Q15389 498 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 ABCB5Q2M3G0 1257 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 PREPLQ4J6C6 727 aaPredicted RBP5.65□□□□□ -1.51
USP54-216ENST00000498143 DACT2Q5SW24 774 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 LIN9Q5TKA1 542 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 FAM83AQ86UY5 434 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 IQCF2Q8IXL9 164 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 CCDC63Q8NA47 563 aa5.65□□□□□ -1.51
USP54-216ENST00000498143 NETO1Q8TDF5 533 aa5.65□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms