RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 LINC00482Q8N8I6 264 aa8.58□□□□□ -1.04
SF3B1-212ENST00000496458 KCNC2Q96PR1 638 aa8.58□□□□□ -1.04
SF3B1-212ENST00000496458 PCDH18Q9HCL0 1135 aa8.58□□□□□ -1.04
SF3B1-212ENST00000496458 ARID1BQ8NFD5 2236 aaPredicted RBP8.57□□□□□ -1.04
SF3B1-212ENST00000496458 ARVCFO00192 962 aa8.57□□□□□ -1.04
SF3B1-212ENST00000496458 SMARCA5O60264 1052 aaPredicted RBP8.57□□□□□ -1.04
SF3B1-212ENST00000496458 CRTAMO95727 393 aa8.57□□□□□ -1.04
SF3B1-212ENST00000496458 LTFP02788 710 aa8.57□□□□□ -1.04
SF3B1-212ENST00000496458 NAT1P18440 290 aa8.57□□□□□ -1.04
SF3B1-212ENST00000496458 TEPPQ6URK8 271 aa8.57□□□□□ -1.04
SF3B1-212ENST00000496458 LIPIQ6XZB0 460 aa8.57□□□□□ -1.04
SF3B1-212ENST00000496458 TRIM48Q8IWZ4 208 aa8.57□□□□□ -1.04
SF3B1-212ENST00000496458 SP8Q8IXZ3 490 aa8.57□□□□□ -1.04
SF3B1-212ENST00000496458 KYQ8NBH2 561 aa8.57□□□□□ -1.04
SF3B1-212ENST00000496458 PCDH19Q8TAB3 1148 aa8.57□□□□□ -1.04
SF3B1-212ENST00000496458 PARD6AQ9NPB6 346 aa8.57□□□□□ -1.04
SF3B1-212ENST00000496458 SPATA6Q9NWH7 488 aaPredicted RBP8.57□□□□□ -1.04
SF3B1-212ENST00000496458 SFMBT1Q9UHJ3 866 aa8.57□□□□□ -1.04
SF3B1-212ENST00000496458 DSEQ9UL01 958 aa8.57□□□□□ -1.04
SF3B1-212ENST00000496458 SH3D21A4FU49 640 aa8.56□□□□□ -1.04
SF3B1-212ENST00000496458 LRG1P02750 347 aa8.56□□□□□ -1.04
SF3B1-212ENST00000496458 SRGAP2CP0DJJ0 459 aa8.56□□□□□ -1.04
SF3B1-212ENST00000496458 TUSC3Q13454 348 aa8.56□□□□□ -1.04
SF3B1-212ENST00000496458 SYT8Q8NBV8 401 aa8.56□□□□□ -1.04
SF3B1-212ENST00000496458 CLEC4DQ8WXI8 215 aa8.56□□□□□ -1.04
SF3B1-212ENST00000496458 FBXW5Q969U6 566 aa8.56□□□□□ -1.04
SF3B1-212ENST00000496458 PIF1Q9H611 641 aa8.56□□□□□ -1.04
SF3B1-212ENST00000496458 NUB1Q9Y5A7 615 aa8.56□□□□□ -1.04
SF3B1-212ENST00000496458 CCDC163A0A0D9SF12 145 aa8.55□□□□□ -1.04
SF3B1-212ENST00000496458 EFCAB14O75071 495 aa8.55□□□□□ -1.04
SF3B1-212ENST00000496458 SASH1O94885 1247 aa8.55□□□□□ -1.04
SF3B1-212ENST00000496458 PYGMP11217 842 aa8.55□□□□□ -1.04
SF3B1-212ENST00000496458 THBS2P35442 1172 aa8.55□□□□□ -1.04
SF3B1-212ENST00000496458 SLURP1P55000 103 aa8.55□□□□□ -1.04
SF3B1-212ENST00000496458 ZC3H7AQ8IWR0 971 aaKnown RBP8.55□□□□□ -1.04
SF3B1-212ENST00000496458 GSTCDQ8NEC7 633 aa8.55□□□□□ -1.04
SF3B1-212ENST00000496458 TTLL11Q8NHH1 800 aa8.55□□□□□ -1.04
SF3B1-212ENST00000496458 SLC7A14Q8TBB6 771 aa8.55□□□□□ -1.04
SF3B1-212ENST00000496458 FEZF2Q8TBJ5 459 aa8.55□□□□□ -1.04
SF3B1-212ENST00000496458 ZSWIM3Q96MP5 696 aa8.55□□□□□ -1.04
SF3B1-212ENST00000496458 SPATA25Q9BR10 227 aa8.55□□□□□ -1.04
SF3B1-212ENST00000496458 CD244Q9BZW8 370 aa8.55□□□□□ -1.04
SF3B1-212ENST00000496458 LUC7LQ9NQ29 371 aaKnown RBP8.55□□□□□ -1.04
SF3B1-212ENST00000496458 CATSPERZQ9NTU4 200 aa8.55□□□□□ -1.04
SF3B1-212ENST00000496458 NTMQ9P121 344 aa8.55□□□□□ -1.04
SF3B1-212ENST00000496458 TELO2Q9Y4R8 837 aa8.55□□□□□ -1.04
SF3B1-212ENST00000496458 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.54□□□□□ -1.04
SF3B1-212ENST00000496458 WNT9AO14904 365 aa8.54□□□□□ -1.04
SF3B1-212ENST00000496458 RASGRP1O95267 797 aa8.54□□□□□ -1.04
SF3B1-212ENST00000496458 ST5P78524 1137 aa8.54□□□□□ -1.04
SF3B1-212ENST00000496458 TRIM61Q5EBN2 209 aa8.54□□□□□ -1.04
SF3B1-212ENST00000496458 TTLL7Q6ZT98 887 aa8.54□□□□□ -1.04
SF3B1-212ENST00000496458 TTLL10Q6ZVT0 673 aa8.54□□□□□ -1.04
SF3B1-212ENST00000496458 KCTD1Q719H9 257 aa8.54□□□□□ -1.04
SF3B1-212ENST00000496458 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.54□□□□□ -1.04
SF3B1-212ENST00000496458 CARFQ8N187 725 aa8.54□□□□□ -1.04
SF3B1-212ENST00000496458 SH3TC2Q8TF17 1288 aa8.54□□□□□ -1.04
SF3B1-212ENST00000496458 KANSL2Q9H9L4 492 aa8.54□□□□□ -1.04
SF3B1-212ENST00000496458 RBPJLQ9UBG7 517 aa8.54□□□□□ -1.04
SF3B1-212ENST00000496458 TCRBV5S4A2TA0A5A2 114 aa8.53□□□□□ -1.04
SF3B1-212ENST00000496458 KCNC1P48547 511 aa8.53□□□□□ -1.04
SF3B1-212ENST00000496458 ADAM9Q13443 819 aa8.53□□□□□ -1.04
SF3B1-212ENST00000496458 SQSTM1Q13501 440 aa8.53□□□□□ -1.04
SF3B1-212ENST00000496458 TMC5Q6UXY8 1006 aa8.53□□□□□ -1.04
SF3B1-212ENST00000496458 BRAPQ7Z569 592 aa8.53□□□□□ -1.04
SF3B1-212ENST00000496458 TTLL6Q8N841 843 aa8.53□□□□□ -1.04
SF3B1-212ENST00000496458 SH3RF2Q8TEC5 729 aa8.53□□□□□ -1.04
SF3B1-212ENST00000496458 MRPL4Q9BYD3 311 aaKnown RBP8.53□□□□□ -1.04
SF3B1-212ENST00000496458 NCOA5Q9HCD5 579 aaKnown RBP8.53□□□□□ -1.04
SF3B1-212ENST00000496458 CBLCQ9ULV8 474 aa8.53□□□□□ -1.04
SF3B1-212ENST00000496458 APPP05067 770 aa8.52□□□□□ -1.05
SF3B1-212ENST00000496458 PDE6AP16499 860 aa8.52□□□□□ -1.05
SF3B1-212ENST00000496458 KRT15P19012 456 aa8.52□□□□□ -1.05
SF3B1-212ENST00000496458 HOXA5P20719 270 aa8.52□□□□□ -1.05
SF3B1-212ENST00000496458 SARSP49591 514 aaKnown RBP8.52□□□□□ -1.05
SF3B1-212ENST00000496458 DNM2P50570 870 aa8.52□□□□□ -1.05
SF3B1-212ENST00000496458 GPR19Q15760 415 aa8.52□□□□□ -1.05
SF3B1-212ENST00000496458 PAN2Q504Q3 1202 aaKnown RBP8.52□□□□□ -1.05
SF3B1-212ENST00000496458 FAM47CQ5HY64 1035 aa8.52□□□□□ -1.05
SF3B1-212ENST00000496458 ARHGAP36Q6ZRI8 547 aa8.52□□□□□ -1.05
SF3B1-212ENST00000496458 C16orf59Q7L2K0 433 aa8.52□□□□□ -1.05
SF3B1-212ENST00000496458 SCLYQ96I15 445 aa8.52□□□□□ -1.05
SF3B1-212ENST00000496458 MAGEB10Q96LZ2 347 aaPredicted RBP8.52□□□□□ -1.05
SF3B1-212ENST00000496458 WASF3Q9UPY6 502 aa8.52□□□□□ -1.05
SF3B1-212ENST00000496458 ADAMTS20P59510 1910 aa8.51□□□□□ -1.05
SF3B1-212ENST00000496458 CCDC66A2RUB6 948 aa8.51□□□□□ -1.05
SF3B1-212ENST00000496458 OTOL1A6NHN0 477 aaPredicted RBP8.51□□□□□ -1.05
SF3B1-212ENST00000496458 FAHP16930 419 aa8.51□□□□□ -1.05
SF3B1-212ENST00000496458 OSTM1Q86WC4 334 aa8.51□□□□□ -1.05
SF3B1-212ENST00000496458 ZDHHC14Q8IZN3 488 aa8.51□□□□□ -1.05
SF3B1-212ENST00000496458 XYLT2Q9H1B5 865 aa8.51□□□□□ -1.05
SF3B1-212ENST00000496458 SRPK3Q9UPE1 567 aa8.51□□□□□ -1.05
SF3B1-212ENST00000496458 GSTA4O15217 222 aa8.5□□□□□ -1.05
SF3B1-212ENST00000496458 RAPGEF3O95398 923 aa8.5□□□□□ -1.05
SF3B1-212ENST00000496458 AMY2AP04746 511 aa8.5□□□□□ -1.05
SF3B1-212ENST00000496458 AMY2BP19961 511 aa8.5□□□□□ -1.05
SF3B1-212ENST00000496458 RPL13P26373 211 aaKnown RBP8.5□□□□□ -1.05
SF3B1-212ENST00000496458 EPHA5P54756 1037 aa8.5□□□□□ -1.05
SF3B1-212ENST00000496458 CRY1Q16526 586 aa8.5□□□□□ -1.05
SF3B1-212ENST00000496458 FGD2Q7Z6J4 655 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms