RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 SETQ01105 290 aaPredicted RBP18.64■□□□□ 0.57
SF3A1-209ENST00000496189 SP4Q02446 784 aa18.64■□□□□ 0.57
SF3A1-209ENST00000496189 TRIM29Q14134 588 aa18.64■□□□□ 0.57
SF3A1-209ENST00000496189 MFSD10Q14728 455 aa18.64■□□□□ 0.57
SF3A1-209ENST00000496189 HABP4Q5JVS0 413 aaKnown RBP18.64■□□□□ 0.57
SF3A1-209ENST00000496189 NIPA1Q7RTP0 329 aa18.64■□□□□ 0.57
SF3A1-209ENST00000496189 SH3RF1Q7Z6J0 888 aa18.64■□□□□ 0.57
SF3A1-209ENST00000496189 BLIDQ8IZY5 108 aa18.64■□□□□ 0.57
SF3A1-209ENST00000496189 TMEM199Q8N511 208 aa18.64■□□□□ 0.57
SF3A1-209ENST00000496189 CCDC155Q8N6L0 562 aa18.64■□□□□ 0.57
SF3A1-209ENST00000496189 BADQ92934 168 aa18.64■□□□□ 0.57
SF3A1-209ENST00000496189 ALG1Q9BT22 464 aa18.64■□□□□ 0.57
SF3A1-209ENST00000496189 KCNH7Q9NS40 1196 aa18.64■□□□□ 0.57
SF3A1-209ENST00000496189 PKD2L1Q9P0L9 805 aa18.64■□□□□ 0.57
SF3A1-209ENST00000496189 B4GALT4O60513 344 aa18.63■□□□□ 0.57
SF3A1-209ENST00000496189 TIMP1P01033 207 aa18.63■□□□□ 0.57
SF3A1-209ENST00000496189 CD4P01730 458 aa18.63■□□□□ 0.57
SF3A1-209ENST00000496189 CYP3A4P08684 503 aa18.63■□□□□ 0.57
SF3A1-209ENST00000496189 PSEN2P49810 448 aa18.63■□□□□ 0.57
SF3A1-209ENST00000496189 FPGSQ05932 587 aa18.63■□□□□ 0.57
SF3A1-209ENST00000496189 SEMA3FQ13275 785 aa18.63■□□□□ 0.57
SF3A1-209ENST00000496189 KIAA0753Q2KHM9 967 aa18.63■□□□□ 0.57
SF3A1-209ENST00000496189 PLA2G4DQ86XP0 818 aa18.63■□□□□ 0.57
SF3A1-209ENST00000496189 HIPK3Q9H422 1215 aa18.63■□□□□ 0.57
SF3A1-209ENST00000496189 TBX21Q9UL17 535 aa18.63■□□□□ 0.57
SF3A1-209ENST00000496189 GRIN2DO15399 1336 aa18.63■□□□□ 0.57
SF3A1-209ENST00000496189 LARGE1O95461 756 aa18.62■□□□□ 0.57
SF3A1-209ENST00000496189 F2P00734 622 aa18.62■□□□□ 0.57
SF3A1-209ENST00000496189 HOXD8P13378 290 aaPredicted RBP18.62■□□□□ 0.57
SF3A1-209ENST00000496189 KCNA2P16389 499 aa18.62■□□□□ 0.57
SF3A1-209ENST00000496189 TDHQ8IZJ6 230 aa18.62■□□□□ 0.57
SF3A1-209ENST00000496189 DAGLBQ8NCG7 672 aa18.62■□□□□ 0.57
SF3A1-209ENST00000496189 RASGRP4Q8TDF6 673 aa18.62■□□□□ 0.57
SF3A1-209ENST00000496189 GPR20Q99678 358 aa18.62■□□□□ 0.57
SF3A1-209ENST00000496189 LLPHQ9BRT6 129 aaKnown RBP18.62■□□□□ 0.57
SF3A1-209ENST00000496189 PPP1R12CQ9BZL4 782 aa18.62■□□□□ 0.57
SF3A1-209ENST00000496189 TRPV6Q9H1D0 765 aa18.62■□□□□ 0.57
SF3A1-209ENST00000496189 JPH1Q9HDC5 661 aaPredicted RBP18.62■□□□□ 0.57
SF3A1-209ENST00000496189 NFASCO94856 1347 aa18.61■□□□□ 0.57
SF3A1-209ENST00000496189 CCDC194A0A1B0GVG4 234 aa18.61■□□□□ 0.57
SF3A1-209ENST00000496189 H3BRB1 525 aa18.61■□□□□ 0.57
SF3A1-209ENST00000496189 MEIS1O00470 390 aa18.61■□□□□ 0.57
SF3A1-209ENST00000496189 LGALS2P05162 132 aa18.61■□□□□ 0.57
SF3A1-209ENST00000496189 PPIGQ13427 754 aaKnown RBP eCLIP18.61■□□□□ 0.57
SF3A1-209ENST00000496189 BFSP2Q13515 415 aa18.61■□□□□ 0.57
SF3A1-209ENST00000496189 NONOQ15233 471 aaKnown RBP eCLIP18.61■□□□□ 0.57
SF3A1-209ENST00000496189 UTP14CQ5TAP6 766 aaKnown RBP18.61■□□□□ 0.57
SF3A1-209ENST00000496189 MFSD5Q6N075 450 aa18.61■□□□□ 0.57
SF3A1-209ENST00000496189 KRT25Q7Z3Z0 450 aa18.61■□□□□ 0.57
SF3A1-209ENST00000496189 SEPT1Q8WYJ6 367 aa18.61■□□□□ 0.57
SF3A1-209ENST00000496189 TNPO1Q92973 898 aaKnown RBP18.61■□□□□ 0.57
SF3A1-209ENST00000496189 TUT1Q9H6E5 874 aaKnown RBP18.61■□□□□ 0.57
SF3A1-209ENST00000496189 AZI2Q9H6S1 392 aa18.61■□□□□ 0.57
SF3A1-209ENST00000496189 TRMT13Q9NUP7 481 aaKnown RBP18.61■□□□□ 0.57
SF3A1-209ENST00000496189 SLC9A2Q9UBY0 812 aa18.61■□□□□ 0.57
SF3A1-209ENST00000496189 SCN10AQ9Y5Y9 1956 aa18.61■□□□□ 0.57
SF3A1-209ENST00000496189 ATP9AO75110 1047 aa18.6■□□□□ 0.57
SF3A1-209ENST00000496189 GNAT1P11488 350 aa18.6■□□□□ 0.57
SF3A1-209ENST00000496189 TCF7P36402 384 aaPredicted RBP18.6■□□□□ 0.57
SF3A1-209ENST00000496189 USP11P51784 963 aa18.6■□□□□ 0.57
SF3A1-209ENST00000496189 PTGISQ16647 500 aa18.6■□□□□ 0.57
SF3A1-209ENST00000496189 SESTD1Q86VW0 696 aa18.6■□□□□ 0.57
SF3A1-209ENST00000496189 CCDC83Q8IWF9 413 aa18.6■□□□□ 0.57
SF3A1-209ENST00000496189 RETREG2Q8NC44 543 aa18.6■□□□□ 0.57
SF3A1-209ENST00000496189 KAT2BQ92831 832 aa18.6■□□□□ 0.57
SF3A1-209ENST00000496189 AIFM3Q96NN9 605 aa18.6■□□□□ 0.57
SF3A1-209ENST00000496189 LTBP2Q14767 1821 aa18.6■□□□□ 0.57
SF3A1-209ENST00000496189 PRR16Q569H4 304 aa18.59■□□□□ 0.57
SF3A1-209ENST00000496189 NSUN7Q8NE18 718 aaKnown RBP18.59■□□□□ 0.57
SF3A1-209ENST00000496189 CYP2W1Q8TAV3 490 aa18.59■□□□□ 0.57
SF3A1-209ENST00000496189 TBCKQ8TEA7 893 aa18.59■□□□□ 0.57
SF3A1-209ENST00000496189 GLG1Q92896 1179 aa18.59■□□□□ 0.57
SF3A1-209ENST00000496189 ZNF577Q9BSK1 485 aa18.59■□□□□ 0.57
SF3A1-209ENST00000496189 PHF20Q9BVI0 1012 aa18.59■□□□□ 0.57
SF3A1-209ENST00000496189 PRO3102Q9H379 93 aa18.59■□□□□ 0.57
SF3A1-209ENST00000496189 AGO4Q9HCK5 861 aaKnown RBP18.59■□□□□ 0.57
SF3A1-209ENST00000496189 TBC1D22BQ9NU19 505 aa18.59■□□□□ 0.57
SF3A1-209ENST00000496189 HDAC6Q9UBN7 1215 aa18.59■□□□□ 0.57
SF3A1-209ENST00000496189 GTF2IRD1Q9UHL9 959 aa18.59■□□□□ 0.57
SF3A1-209ENST00000496189 KCNJ14Q9UNX9 436 aa18.59■□□□□ 0.57
SF3A1-209ENST00000496189 C17orf102A2RUQ5 167 aa18.58■□□□□ 0.56
SF3A1-209ENST00000496189 HAS3O00219 553 aa18.58■□□□□ 0.56
SF3A1-209ENST00000496189 IPO5O00410 1097 aaKnown RBP18.58■□□□□ 0.56
SF3A1-209ENST00000496189 CTDNEP1O95476 244 aa18.58■□□□□ 0.56
SF3A1-209ENST00000496189 ARP10275 920 aa18.58■□□□□ 0.56
SF3A1-209ENST00000496189 HMGN5P82970 282 aaKnown RBP18.58■□□□□ 0.56
SF3A1-209ENST00000496189 FAM184AQ8NB25 1140 aa18.58■□□□□ 0.56
SF3A1-209ENST00000496189 NAP1L4Q99733 375 aaKnown RBP18.58■□□□□ 0.56
SF3A1-209ENST00000496189 C16orf70Q9BSU1 422 aa18.58■□□□□ 0.56
SF3A1-209ENST00000496189 SMARCAD1Q9H4L7 1026 aa18.58■□□□□ 0.56
SF3A1-209ENST00000496189 BCAS3Q9H6U6 928 aa18.58■□□□□ 0.56
SF3A1-209ENST00000496189 ERAP1Q9NZ08 941 aa18.58■□□□□ 0.56
SF3A1-209ENST00000496189 KIF3AQ9Y496 699 aa18.58■□□□□ 0.56
SF3A1-209ENST00000496189 FAM86B1E9PN63 330 aa18.57■□□□□ 0.56
SF3A1-209ENST00000496189 FAM86B2P0C5J1 330 aa18.57■□□□□ 0.56
SF3A1-209ENST00000496189 CYP2C9P11712 490 aa18.57■□□□□ 0.56
SF3A1-209ENST00000496189 CIITAP33076 1130 aa18.57■□□□□ 0.56
SF3A1-209ENST00000496189 CYP2C18P33260 490 aa18.57■□□□□ 0.56
SF3A1-209ENST00000496189 KRT2P35908 639 aa18.57■□□□□ 0.56
SF3A1-209ENST00000496189 SAFBQ15424 915 aaKnown RBP eCLIP18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms