RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 GPKOWQ92917 476 aaPredicted RBP eCLIP12.31□□□□□ -0.44
COL6A3-214ENST00000493608 FAM161BQ96MY7 647 aa12.31□□□□□ -0.44
COL6A3-214ENST00000493608 LZTS2Q9BRK4 669 aa12.31□□□□□ -0.44
COL6A3-214ENST00000493608 ALDH8A1Q9H2A2 487 aaPredicted RBP12.31□□□□□ -0.44
COL6A3-214ENST00000493608 TRMT13Q9NUP7 481 aaKnown RBP12.31□□□□□ -0.44
COL6A3-214ENST00000493608 MAP3K20Q9NYL2 800 aaKnown RBP12.31□□□□□ -0.44
COL6A3-214ENST00000493608 RTEL1Q9NZ71 1219 aa12.31□□□□□ -0.44
COL6A3-214ENST00000493608 BRPF3Q9ULD4 1205 aa12.31□□□□□ -0.44
COL6A3-214ENST00000493608 LAMA2P24043 3122 aaKnown RBP12.31□□□□□ -0.44
COL6A3-214ENST00000493608 DOCK5Q9H7D0 1870 aa12.31□□□□□ -0.44
COL6A3-214ENST00000493608 MMP3P08254 477 aa12.3□□□□□ -0.44
COL6A3-214ENST00000493608 CALM1P0DP23 149 aa12.3□□□□□ -0.44
COL6A3-214ENST00000493608 CALM2P0DP24 149 aa12.3□□□□□ -0.44
COL6A3-214ENST00000493608 CALM3P0DP25 149 aa12.3□□□□□ -0.44
COL6A3-214ENST00000493608 GNAQP50148 359 aa12.3□□□□□ -0.44
COL6A3-214ENST00000493608 TSGA10IPQ3SY00 556 aa12.3□□□□□ -0.44
COL6A3-214ENST00000493608 SYNE3Q6ZMZ3 975 aa12.3□□□□□ -0.44
COL6A3-214ENST00000493608 NUDT18Q6ZVK8 323 aa12.3□□□□□ -0.44
COL6A3-214ENST00000493608 TMEM199Q8N511 208 aa12.3□□□□□ -0.44
COL6A3-214ENST00000493608 SAMD3Q8N6K7 520 aa12.3□□□□□ -0.44
COL6A3-214ENST00000493608 RNPC3Q96LT9 517 aaKnown RBP12.3□□□□□ -0.44
COL6A3-214ENST00000493608 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.3□□□□□ -0.44
COL6A3-214ENST00000493608 HIPK3Q9H422 1215 aa12.3□□□□□ -0.44
COL6A3-214ENST00000493608 BCAS3Q9H6U6 928 aa12.3□□□□□ -0.44
COL6A3-214ENST00000493608 SEC63Q9UGP8 760 aaKnown RBP12.3□□□□□ -0.44
COL6A3-214ENST00000493608 NAP1L2Q9ULW6 460 aaPredicted RBP12.3□□□□□ -0.44
COL6A3-214ENST00000493608 SCN5AQ14524 2016 aa12.29□□□□□ -0.44
COL6A3-214ENST00000493608 RBAK-RBAKDNI3L0D1 243 aa12.29□□□□□ -0.44
COL6A3-214ENST00000493608 MEIS2O14770 477 aa12.29□□□□□ -0.44
COL6A3-214ENST00000493608 SMARCA1P28370 1054 aa12.29□□□□□ -0.44
COL6A3-214ENST00000493608 CCND2P30279 289 aa12.29□□□□□ -0.44
COL6A3-214ENST00000493608 SP2Q02086 613 aa12.29□□□□□ -0.44
COL6A3-214ENST00000493608 TMEM240Q5SV17 173 aa12.29□□□□□ -0.44
COL6A3-214ENST00000493608 APOA5Q6Q788 366 aa12.29□□□□□ -0.44
COL6A3-214ENST00000493608 PADI6Q6TGC4 694 aa12.29□□□□□ -0.44
COL6A3-214ENST00000493608 TMTC3Q6ZXV5 915 aa12.29□□□□□ -0.44
COL6A3-214ENST00000493608 ZNF365Q70YC5 407 aa12.29□□□□□ -0.44
COL6A3-214ENST00000493608 SGMS1Q86VZ5 419 aa12.29□□□□□ -0.44
COL6A3-214ENST00000493608 DHX37Q8IY37 1157 aaKnown RBP12.29□□□□□ -0.44
COL6A3-214ENST00000493608 SMARCC2Q8TAQ2 1214 aa12.29□□□□□ -0.44
COL6A3-214ENST00000493608 SCLYQ96I15 445 aa12.29□□□□□ -0.44
COL6A3-214ENST00000493608 NOC4LQ9BVI4 516 aaKnown RBP12.29□□□□□ -0.44
COL6A3-214ENST00000493608 KLF18A0A0U1RQI7 1052 aa12.28□□□□□ -0.44
COL6A3-214ENST00000493608 ZBTB43O43298 467 aa12.28□□□□□ -0.44
COL6A3-214ENST00000493608 KPNA6O60684 536 aa12.28□□□□□ -0.44
COL6A3-214ENST00000493608 GGPS1O95749 300 aa12.28□□□□□ -0.44
COL6A3-214ENST00000493608 MRPS9P82933 396 aaKnown RBP12.28□□□□□ -0.44
COL6A3-214ENST00000493608 FGD1P98174 961 aa12.28□□□□□ -0.44
COL6A3-214ENST00000493608 PPIGQ13427 754 aaKnown RBP eCLIP12.28□□□□□ -0.44
COL6A3-214ENST00000493608 KRT32Q14532 448 aa12.28□□□□□ -0.44
COL6A3-214ENST00000493608 UBE2SQ16763 222 aa12.28□□□□□ -0.44
COL6A3-214ENST00000493608 KAT2BQ92831 832 aa12.28□□□□□ -0.44
COL6A3-214ENST00000493608 CUL5Q93034 780 aa12.28□□□□□ -0.44
COL6A3-214ENST00000493608 JAKMIP1Q96N16 626 aaKnown RBP12.28□□□□□ -0.44
COL6A3-214ENST00000493608 ALG1Q9BT22 464 aa12.28□□□□□ -0.44
COL6A3-214ENST00000493608 SEZ6LQ9BYH1 1024 aa12.28□□□□□ -0.44
COL6A3-214ENST00000493608 MTMR10Q9NXD2 777 aa12.28□□□□□ -0.44
COL6A3-214ENST00000493608 SNX14Q9Y5W7 946 aa12.28□□□□□ -0.44
COL6A3-214ENST00000493608 ZNF286BP0CG31 522 aa12.27□□□□□ -0.45
COL6A3-214ENST00000493608 CASTP20810 708 aaKnown RBP12.27□□□□□ -0.45
COL6A3-214ENST00000493608 CDC27P30260 824 aa12.27□□□□□ -0.45
COL6A3-214ENST00000493608 HSPA4P34932 840 aa12.27□□□□□ -0.45
COL6A3-214ENST00000493608 APOBRQ0VD83 1088 aa12.27□□□□□ -0.45
COL6A3-214ENST00000493608 LAMC2Q13753 1193 aa12.27□□□□□ -0.45
COL6A3-214ENST00000493608 DGKDQ16760 1214 aa12.27□□□□□ -0.45
COL6A3-214ENST00000493608 RTN1Q16799 776 aa12.27□□□□□ -0.45
COL6A3-214ENST00000493608 HSDL1Q3SXM5 330 aa12.27□□□□□ -0.45
COL6A3-214ENST00000493608 CELF3Q5SZQ8 465 aaKnown RBP12.27□□□□□ -0.45
COL6A3-214ENST00000493608 MYSM1Q5VVJ2 828 aa12.27□□□□□ -0.45
COL6A3-214ENST00000493608 FAM109BQ6ICB4 259 aaPredicted RBP12.27□□□□□ -0.45
COL6A3-214ENST00000493608 NFRKBQ6P4R8 1299 aa12.27□□□□□ -0.45
COL6A3-214ENST00000493608 Q6ZUG5 572 aa12.27□□□□□ -0.45
COL6A3-214ENST00000493608 HEATR3Q7Z4Q2 680 aa12.27□□□□□ -0.45
COL6A3-214ENST00000493608 WNT8AQ9H1J5 351 aa12.27□□□□□ -0.45
COL6A3-214ENST00000493608 PSTPIP2Q9H939 334 aa12.27□□□□□ -0.45
COL6A3-214ENST00000493608 MYO9BQ13459 2157 aa12.27□□□□□ -0.45
COL6A3-214ENST00000493608 GOLGA8AA7E2F4 631 aa12.26□□□□□ -0.45
COL6A3-214ENST00000493608 GOLGA8BA8MQT2 603 aa12.26□□□□□ -0.45
COL6A3-214ENST00000493608 GRXCR1A8MXD5 290 aa12.26□□□□□ -0.45
COL6A3-214ENST00000493608 SUPT20HL2P0C7V6 817 aa12.26□□□□□ -0.45
COL6A3-214ENST00000493608 UBA1P22314 1058 aaKnown RBP12.26□□□□□ -0.45
COL6A3-214ENST00000493608 ADD1P35611 737 aaKnown RBP12.26□□□□□ -0.45
COL6A3-214ENST00000493608 SEMA3FQ13275 785 aa12.26□□□□□ -0.45
COL6A3-214ENST00000493608 OTOP2Q7RTS6 562 aa12.26□□□□□ -0.45
COL6A3-214ENST00000493608 DEFB128Q7Z7B8 93 aa12.26□□□□□ -0.45
COL6A3-214ENST00000493608 PPTC7Q8NI37 304 aa12.26□□□□□ -0.45
COL6A3-214ENST00000493608 KCNB2Q92953 911 aa12.26□□□□□ -0.45
COL6A3-214ENST00000493608 EMID1Q96A84 441 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-214ENST00000493608 SPATA33Q96N06 139 aa12.26□□□□□ -0.45
COL6A3-214ENST00000493608 MLXIPQ9HAP2 919 aa12.26□□□□□ -0.45
COL6A3-214ENST00000493608 IL23AQ9NPF7 189 aa12.26□□□□□ -0.45
COL6A3-214ENST00000493608 FAM217BQ9NTX9 383 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-214ENST00000493608 RBM28Q9NW13 759 aaKnown RBP12.26□□□□□ -0.45
COL6A3-214ENST00000493608 PPP4R2Q9NY27 417 aa12.26□□□□□ -0.45
COL6A3-214ENST00000493608 TELO2Q9Y4R8 837 aa12.26□□□□□ -0.45
COL6A3-214ENST00000493608 V9GY48 417 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-214ENST00000493608 CNTNAP5Q8WYK1 1306 aa12.26□□□□□ -0.45
COL6A3-214ENST00000493608 TET1Q8NFU7 2136 aa12.25□□□□□ -0.45
COL6A3-214ENST00000493608 PIK3CDO00329 1044 aa12.25□□□□□ -0.45
COL6A3-214ENST00000493608 PPFIA3O75145 1194 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms