RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 CPSF2Q9P2I0 782 aaKnown RBP12.83□□□□□ -0.36
HDAC4-210ENST00000493582 FBXO3Q9UK99 471 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 THRAP3Q9Y2W1 955 aaKnown RBP12.83□□□□□ -0.36
HDAC4-210ENST00000493582 SNUPNO95149 360 aaKnown RBP12.82□□□□□ -0.36
HDAC4-210ENST00000493582 RCAN1P53805 252 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 MAP3K12Q12852 859 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 TBC1D5Q92609 795 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 TRIM31Q9BZY9 425 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 DPH5Q9H2P9 285 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 RIC1Q4ADV7 1423 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 TLR2O60603 784 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 KIF4AO95239 1232 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 LINGO3P0C6S8 592 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 RWDD2BP57060 319 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 TROAPQ12815 778 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 PDXDC1Q6P996 788 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 TMC3Q7Z5M5 1100 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 PIGWQ7Z7B1 504 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 CCHCR1Q8TD31 782 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 ESR2Q92731 530 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 TAF4BQ92750 862 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 ADAMTS1Q9UHI8 967 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 CORO1CQ9ULV4 474 aaPredicted RBP12.82□□□□□ -0.36
HDAC4-210ENST00000493582 STK38LQ9Y2H1 464 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 ATP8A1Q9Y2Q0 1164 aa12.82□□□□□ -0.36
HDAC4-210ENST00000493582 PARP4Q9UKK3 1724 aaKnown RBP12.82□□□□□ -0.36
HDAC4-210ENST00000493582 TLDC2A0PJX2 215 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 SMIM23A6NLE4 172 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 VIMP08670 466 aaKnown RBP12.81□□□□□ -0.36
HDAC4-210ENST00000493582 ITGA4P13612 1032 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 PECAM1P16284 738 aaPredicted RBP12.81□□□□□ -0.36
HDAC4-210ENST00000493582 ABL2P42684 1182 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 RBBP5Q15291 538 aaKnown RBP12.81□□□□□ -0.36
HDAC4-210ENST00000493582 CCDC84Q86UT8 332 aaPredicted RBP12.81□□□□□ -0.36
HDAC4-210ENST00000493582 SPATA5Q8NB90 893 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.81□□□□□ -0.368e-7■■■■■ 61.5
HDAC4-210ENST00000493582 ZSCAN10Q96SZ4 725 aaPredicted RBP12.81□□□□□ -0.36
HDAC4-210ENST00000493582 CELF4Q9BZC1 486 aaKnown RBP12.81□□□□□ -0.36
HDAC4-210ENST00000493582 TRIM9Q9C026 710 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 TANGO6Q9C0B7 1094 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 ARHGEF10LQ9HCE6 1279 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 CD2APQ9Y5K6 639 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 A0A087X0T9 212 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 CYP2D7A0A087X1C5 515 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 F8VZ95 297 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 UBOX5O94941 541 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 GSTA1P08263 222 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 FAM228BP0C875 321 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 NQO1P15559 274 aaKnown RBP12.81□□□□□ -0.36
HDAC4-210ENST00000493582 TRAPPC10P48553 1259 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 RPS6KA1Q15418 735 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 KIAA0895Q8NCT3 520 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 KCNV2Q8TDN2 545 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 DCAF5Q96JK2 942 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 ZNF512BQ96KM6 892 aaPredicted RBP12.81□□□□□ -0.36
HDAC4-210ENST00000493582 RNF41Q9H4P4 317 aaPredicted RBP12.81□□□□□ -0.36
HDAC4-210ENST00000493582 PCDHGC5Q9Y5F6 944 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 FAM205AQ6ZU69 1335 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 MYH7BA7E2Y1 1941 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 RTL9Q8NET4 1388 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 PDE8BO95263 885 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 SHBGP04278 402 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 PLCG1P19174 1290 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 IFNAR2P48551 515 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 PPP2R5BQ15173 497 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 SLC9C1Q4G0N8 1177 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 TMED8Q6PL24 325 aaPredicted RBP12.81□□□□□ -0.36
HDAC4-210ENST00000493582 SCFD2Q8WU76 684 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 PRMT1Q99873 361 aaKnown RBP12.81□□□□□ -0.36
HDAC4-210ENST00000493582 HOMER3Q9NSC5 361 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 SAMD15Q9P1V8 674 aa12.81□□□□□ -0.36
HDAC4-210ENST00000493582 SSU72P8A0A1W2PR75 194 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 CFAP73A6NFT4 308 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 IGF2BP3O00425 579 aaKnown RBP eCLIP12.8□□□□□ -0.36
HDAC4-210ENST00000493582 TTI1O43156 1089 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 EVI5O60447 810 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 CSF1RP07333 972 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 MTMR3Q13615 1198 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 BLMHQ13867 455 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 RASGRF1Q13972 1273 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 GNPTABQ3T906 1256 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 TMTC3Q6ZXV5 915 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 ANKS1AQ92625 1134 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 CNOT10Q9H9A5 744 aaKnown RBP12.8□□□□□ -0.36
HDAC4-210ENST00000493582 ASAP2O43150 1006 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 KRT16P08779 473 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 SCG2P13521 617 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 NCALDP61601 193 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 KCNMA1Q12791 1236 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 ANKRD20A2Q5SQ80 823 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 ANKRD20A1Q5TYW2 823 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 ANKRD20A3Q5VUR7 823 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 TLCD1Q96CP7 247 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 IQCDQ96DY2 449 aa12.8□□□□□ -0.36
HDAC4-210ENST00000493582 RBAK-RBAKDNI3L0D1 243 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 KRIT1O00522 736 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 RARAP10276 462 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 ALADP13716 330 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 ARID4AP29374 1257 aaPredicted RBP12.79□□□□□ -0.36
HDAC4-210ENST00000493582 ITIH4Q14624 930 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms