RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-212	ENST00000488896	PCDH18	Q9HCL0	1135 aa		7.36	□□□□□ -1.23
PTPN4-212	ENST00000488896	NGRN	Q9NPE2	291 aa	Known RBP	7.36	□□□□□ -1.23
PTPN4-212	ENST00000488896	RBPJL	Q9UBG7	517 aa		7.36	□□□□□ -1.23
PTPN4-212	ENST00000488896	ASH2L	Q9UBL3	628 aa		7.36	□□□□□ -1.23
PTPN4-212	ENST00000488896	FAM47E-STBD1	D6RA91	191 aa		7.35	□□□□□ -1.23
PTPN4-212	ENST00000488896	LRG1	P02750	347 aa		7.35	□□□□□ -1.23
PTPN4-212	ENST00000488896	TMC5	Q6UXY8	1006 aa		7.35	□□□□□ -1.23
PTPN4-212	ENST00000488896	TTLL6	Q8N841	843 aa		7.35	□□□□□ -1.23
PTPN4-212	ENST00000488896	PHOSPHO1	Q8TCT1	267 aa		7.35	□□□□□ -1.23
PTPN4-212	ENST00000488896	CLEC4D	Q8WXI8	215 aa		7.35	□□□□□ -1.23
PTPN4-212	ENST00000488896	DDX1	Q92499	740 aa	Known RBP	7.35	□□□□□ -1.23
PTPN4-212	ENST00000488896	PCDHA8	Q9Y5H6	950 aa		7.35	□□□□□ -1.23
PTPN4-212	ENST00000488896	KRTAP9-7	A8MTY7	169 aa		7.34	□□□□□ -1.23
PTPN4-212	ENST00000488896	DDX3X	O00571	662 aa	Known RBP eCLIP	7.34	□□□□□ -1.23
PTPN4-212	ENST00000488896	GUCY1A3	Q02108	690 aa		7.34	□□□□□ -1.23
PTPN4-212	ENST00000488896	TUSC3	Q13454	348 aa		7.34	□□□□□ -1.23
PTPN4-212	ENST00000488896	PRAMEF18	Q5VWM3	479 aa		7.34	□□□□□ -1.23
PTPN4-212	ENST00000488896	MCTP2	Q6DN12	878 aa		7.34	□□□□□ -1.23
PTPN4-212	ENST00000488896	TRIM48	Q8IWZ4	208 aa		7.34	□□□□□ -1.23
PTPN4-212	ENST00000488896	PTPRN2	Q92932	1015 aa		7.34	□□□□□ -1.23
PTPN4-212	ENST00000488896	DHRS4	Q9BTZ2	278 aa		7.34	□□□□□ -1.23
PTPN4-212	ENST00000488896	RTEL1	Q9NZ71	1219 aa		7.34	□□□□□ -1.23
PTPN4-212	ENST00000488896	CROT	Q9UKG9	612 aa		7.34	□□□□□ -1.23
PTPN4-212	ENST00000488896	DSE	Q9UL01	958 aa		7.34	□□□□□ -1.23
PTPN4-212	ENST00000488896	MRPS23	Q9Y3D9	190 aa	Known RBP	7.34	□□□□□ -1.23
PTPN4-212	ENST00000488896	AQP7	O14520	342 aa		7.33	□□□□□ -1.24
PTPN4-212	ENST00000488896	FOXD2	O60548	495 aa	Predicted RBP	7.33	□□□□□ -1.24
PTPN4-212	ENST00000488896	C6orf222	P0C671	652 aa	Predicted RBP	7.33	□□□□□ -1.24
PTPN4-212	ENST00000488896	SRGAP2C	P0DJJ0	459 aa		7.33	□□□□□ -1.24
PTPN4-212	ENST00000488896	RPL13	P26373	211 aa	Known RBP	7.33	□□□□□ -1.24
PTPN4-212	ENST00000488896	GJA9	P57773	515 aa		7.33	□□□□□ -1.24
PTPN4-212	ENST00000488896	ADAM9	Q13443	819 aa		7.33	□□□□□ -1.24
PTPN4-212	ENST00000488896	PHF19	Q5T6S3	580 aa		7.33	□□□□□ -1.24
PTPN4-212	ENST00000488896	SOGA3	Q5TF21	947 aa		7.33	□□□□□ -1.24
PTPN4-212	ENST00000488896	MAMDC2	Q7Z304	686 aa	Predicted RBP	7.33	□□□□□ -1.24
PTPN4-212	ENST00000488896	FERMT3	Q86UX7	667 aa		7.33	□□□□□ -1.24
PTPN4-212	ENST00000488896	ZNF761	Q86XN6	746 aa	Predicted RBP	7.33	□□□□□ -1.24
PTPN4-212	ENST00000488896	ADAMTS17	Q8TE56	1095 aa		7.33	□□□□□ -1.24
PTPN4-212	ENST00000488896	SREK1	Q8WXA9	508 aa	Known RBP	7.33	□□□□□ -1.24
PTPN4-212	ENST00000488896	PCDHA9	Q9Y5H5	950 aa		7.33	□□□□□ -1.24
PTPN4-212	ENST00000488896	PAK1	Q13153	545 aa		7.32	□□□□□ -1.24
PTPN4-212	ENST00000488896	CYP4F22	Q6NT55	531 aa		7.32	□□□□□ -1.24
PTPN4-212	ENST00000488896	FRMD5	Q7Z6J6	570 aa		7.32	□□□□□ -1.24
PTPN4-212	ENST00000488896	UHMK1	Q8TAS1	419 aa	Known RBP	7.32	□□□□□ -1.24
PTPN4-212	ENST00000488896	CLIC6	Q96NY7	704 aa		7.32	□□□□□ -1.24
PTPN4-212	ENST00000488896	CD244	Q9BZW8	370 aa		7.32	□□□□□ -1.24
PTPN4-212	ENST00000488896	CATSPERZ	Q9NTU4	200 aa		7.32	□□□□□ -1.24
PTPN4-212	ENST00000488896	NDOR1	Q9UHB4	597 aa		7.32	□□□□□ -1.24
PTPN4-212	ENST00000488896	WASF3	Q9UPY6	502 aa		7.32	□□□□□ -1.24
PTPN4-212	ENST00000488896		B8ZZF3	427 aa		7.31	□□□□□ -1.24
PTPN4-212	ENST00000488896	PRICKLE3	O43900	615 aa	Predicted RBP	7.31	□□□□□ -1.24
PTPN4-212	ENST00000488896	NOBOX	O60393	691 aa		7.31	□□□□□ -1.24
PTPN4-212	ENST00000488896	GABRE	P78334	506 aa		7.31	□□□□□ -1.24
PTPN4-212	ENST00000488896	RGL3	Q3MIN7	710 aa		7.31	□□□□□ -1.24
PTPN4-212	ENST00000488896	UBXN11	Q5T124	520 aa		7.31	□□□□□ -1.24
PTPN4-212	ENST00000488896	LRP10	Q7Z4F1	713 aa		7.31	□□□□□ -1.24
PTPN4-212	ENST00000488896	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	7.31	□□□□□ -1.24
PTPN4-212	ENST00000488896	TELO2	Q9Y4R8	837 aa		7.31	□□□□□ -1.24
PTPN4-212	ENST00000488896	NUB1	Q9Y5A7	615 aa		7.31	□□□□□ -1.24
PTPN4-212	ENST00000488896	CRTAM	O95727	393 aa		7.3	□□□□□ -1.24
PTPN4-212	ENST00000488896	PYGM	P11217	842 aa		7.3	□□□□□ -1.24
PTPN4-212	ENST00000488896	KRT15	P19012	456 aa		7.3	□□□□□ -1.24
PTPN4-212	ENST00000488896	BMS1	Q14692	1282 aa	Known RBP	7.3	□□□□□ -1.24
PTPN4-212	ENST00000488896	PAN2	Q504Q3	1202 aa	Known RBP	7.3	□□□□□ -1.24
PTPN4-212	ENST00000488896	PCDH19	Q8TAB3	1148 aa		7.3	□□□□□ -1.24
PTPN4-212	ENST00000488896	TEPSIN	Q96N21	525 aa		7.3	□□□□□ -1.24
PTPN4-212	ENST00000488896	OSBPL2	Q9H1P3	480 aa		7.3	□□□□□ -1.24
PTPN4-212	ENST00000488896	DUSP10	Q9Y6W6	482 aa		7.3	□□□□□ -1.24
PTPN4-212	ENST00000488896	SYN1	P17600	705 aa		7.29	□□□□□ -1.24
PTPN4-212	ENST00000488896	CNR2	P34972	360 aa		7.29	□□□□□ -1.24
PTPN4-212	ENST00000488896	DNM2	P50570	870 aa		7.29	□□□□□ -1.24
PTPN4-212	ENST00000488896	ST5	P78524	1137 aa		7.29	□□□□□ -1.24
PTPN4-212	ENST00000488896	RTP5	Q14D33	572 aa		7.29	□□□□□ -1.24
PTPN4-212	ENST00000488896	HABP4	Q5JVS0	413 aa	Known RBP	7.29	□□□□□ -1.24
PTPN4-212	ENST00000488896	PRR31	Q5SQ13	230 aa		7.29	□□□□□ -1.24
PTPN4-212	ENST00000488896	VASN	Q6EMK4	673 aa		7.29	□□□□□ -1.24
PTPN4-212	ENST00000488896	ARHGAP36	Q6ZRI8	547 aa		7.29	□□□□□ -1.24
PTPN4-212	ENST00000488896	EP400NL	Q6ZTU2	488 aa		7.29	□□□□□ -1.24
PTPN4-212	ENST00000488896	KCTD1	Q719H9	257 aa		7.29	□□□□□ -1.24
PTPN4-212	ENST00000488896	ZC3H7A	Q8IWR0	971 aa	Known RBP	7.29	□□□□□ -1.24
PTPN4-212	ENST00000488896	TXNDC5	Q8NBS9	432 aa	Known RBP	7.29	□□□□□ -1.24
PTPN4-212	ENST00000488896	KISS1R	Q969F8	398 aa	Predicted RBP	7.29	□□□□□ -1.24
PTPN4-212	ENST00000488896	FBXW5	Q969U6	566 aa		7.29	□□□□□ -1.24
PTPN4-212	ENST00000488896	MKL1	Q969V6	931 aa		7.29	□□□□□ -1.24
PTPN4-212	ENST00000488896	TMEM209	Q96SK2	561 aa		7.29	□□□□□ -1.24
PTPN4-212	ENST00000488896	L2HGDH	Q9H9P8	463 aa		7.29	□□□□□ -1.24
PTPN4-212	ENST00000488896	TCRBV5S4A2T	A0A5A2	114 aa		7.28	□□□□□ -1.24
PTPN4-212	ENST00000488896	KCNK3	O14649	394 aa		7.28	□□□□□ -1.24
PTPN4-212	ENST00000488896	PRRG2	O14669	202 aa		7.28	□□□□□ -1.24
PTPN4-212	ENST00000488896	CYP1A1	P04798	512 aa	Predicted RBP	7.28	□□□□□ -1.24
PTPN4-212	ENST00000488896	CKM	P06732	381 aa		7.28	□□□□□ -1.24
PTPN4-212	ENST00000488896	FAH	P16930	419 aa		7.28	□□□□□ -1.24
PTPN4-212	ENST00000488896	IL13	P35225	146 aa		7.28	□□□□□ -1.24
PTPN4-212	ENST00000488896	GLRB	P48167	497 aa		7.28	□□□□□ -1.24
PTPN4-212	ENST00000488896	MLLT6	P55198	1093 aa	Predicted RBP	7.28	□□□□□ -1.24
PTPN4-212	ENST00000488896	LONRF2	Q1L5Z9	754 aa		7.28	□□□□□ -1.24
PTPN4-212	ENST00000488896	OSTM1	Q86WC4	334 aa		7.28	□□□□□ -1.24
PTPN4-212	ENST00000488896	TTLL11	Q8NHH1	800 aa		7.28	□□□□□ -1.24
PTPN4-212	ENST00000488896	SH3RF2	Q8TEC5	729 aa		7.28	□□□□□ -1.24
PTPN4-212	ENST00000488896	BDH2	Q9BUT1	245 aa		7.28	□□□□□ -1.24

Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms