RNA–Protein interactions for RNA: ENST00000488494.5

ITGB1-215, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-215ENST00000488494 TRIM50Q86XT4 487 aa20.32■□□□□ 0.84
ITGB1-215ENST00000488494 TEX2Q8IWB9 1127 aa20.32■□□□□ 0.84
ITGB1-215ENST00000488494 RETREG2Q8NC44 543 aa20.32■□□□□ 0.84
ITGB1-215ENST00000488494 HERVK_113Q902F9 699 aa20.32■□□□□ 0.84
ITGB1-215ENST00000488494 PHKBQ93100 1093 aa20.32■□□□□ 0.84
ITGB1-215ENST00000488494 VWCEQ96DN2 955 aa20.32■□□□□ 0.84
ITGB1-215ENST00000488494 CDHR1Q96JP9 859 aa20.32■□□□□ 0.84
ITGB1-215ENST00000488494 SENP7Q9BQF6 1050 aa20.32■□□□□ 0.84
ITGB1-215ENST00000488494 ANO3Q9BYT9 981 aa20.32■□□□□ 0.84
ITGB1-215ENST00000488494 MTIF3Q9H2K0 278 aaKnown RBP20.32■□□□□ 0.84
ITGB1-215ENST00000488494 TMEM260Q9NX78 707 aa20.32■□□□□ 0.84
ITGB1-215ENST00000488494 PKD2L1Q9P0L9 805 aa20.32■□□□□ 0.84
ITGB1-215ENST00000488494 CXXC1Q9P0U4 656 aaPredicted RBP20.32■□□□□ 0.84
ITGB1-215ENST00000488494 UBIAD1Q9Y5Z9 338 aa20.32■□□□□ 0.84
ITGB1-215ENST00000488494 SCN5AQ14524 2016 aa20.31■□□□□ 0.84
ITGB1-215ENST00000488494 PFKMP08237 780 aa20.31■□□□□ 0.84
ITGB1-215ENST00000488494 KCNA2P16389 499 aa20.31■□□□□ 0.84
ITGB1-215ENST00000488494 DNAJB2P25686 324 aa20.31■□□□□ 0.84
ITGB1-215ENST00000488494 PDIA3P30101 505 aaKnown RBP20.31■□□□□ 0.84
ITGB1-215ENST00000488494 RPUSD2Q8IZ73 545 aaKnown RBP20.31■□□□□ 0.84
ITGB1-215ENST00000488494 CAGE1Q8TC20 777 aa20.31■□□□□ 0.84
ITGB1-215ENST00000488494 GUCD1Q96NT3 240 aa20.31■□□□□ 0.84
ITGB1-215ENST00000488494 TM6SF1Q9BZW5 370 aa20.31■□□□□ 0.84
ITGB1-215ENST00000488494 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.3■□□□□ 0.84
ITGB1-215ENST00000488494 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.3■□□□□ 0.84
ITGB1-215ENST00000488494 H3BRB1 525 aa20.3■□□□□ 0.84
ITGB1-215ENST00000488494 ATP9AO75110 1047 aa20.3■□□□□ 0.84
ITGB1-215ENST00000488494 IQCF3P0C7M6 154 aa20.3■□□□□ 0.84
ITGB1-215ENST00000488494 RFC2P35250 354 aa20.3■□□□□ 0.84
ITGB1-215ENST00000488494 EVCP57679 992 aa20.3■□□□□ 0.84
ITGB1-215ENST00000488494 CCT2P78371 535 aaKnown RBP20.3■□□□□ 0.84
ITGB1-215ENST00000488494 AP3B2Q13367 1082 aa20.3■□□□□ 0.84
ITGB1-215ENST00000488494 GIMAP8Q8ND71 665 aaPredicted RBP20.3■□□□□ 0.84
ITGB1-215ENST00000488494 AFAP1L1Q8TED9 768 aa20.3■□□□□ 0.84
ITGB1-215ENST00000488494 SLC26A6Q9BXS9 759 aa20.3■□□□□ 0.84
ITGB1-215ENST00000488494 GLT8D2Q9H1C3 349 aa20.3■□□□□ 0.84
ITGB1-215ENST00000488494 TTYH1Q9H313 450 aaPredicted RBP20.3■□□□□ 0.84
ITGB1-215ENST00000488494 TUT1Q9H6E5 874 aaKnown RBP20.3■□□□□ 0.84
ITGB1-215ENST00000488494 ZBBXA8MT70 800 aa20.29■□□□□ 0.84
ITGB1-215ENST00000488494 GRXCR1A8MXD5 290 aa20.29■□□□□ 0.84
ITGB1-215ENST00000488494 PRPF3O43395 683 aaKnown RBP20.29■□□□□ 0.84
ITGB1-215ENST00000488494 FOSP01100 380 aaPredicted RBP20.29■□□□□ 0.84
ITGB1-215ENST00000488494 SMIM10L2AP0DMW4 78 aa20.29■□□□□ 0.84
ITGB1-215ENST00000488494 SMIM10L2BP0DMW5 78 aa20.29■□□□□ 0.84
ITGB1-215ENST00000488494 CLK2P49760 499 aaKnown RBP20.29■□□□□ 0.84
ITGB1-215ENST00000488494 ZNF200P98182 395 aaPredicted RBP20.29■□□□□ 0.84
ITGB1-215ENST00000488494 AKAP17AQ02040 695 aaKnown RBP20.29■□□□□ 0.84
ITGB1-215ENST00000488494 HIC1Q14526 733 aa20.29■□□□□ 0.84
ITGB1-215ENST00000488494 NTRK3Q16288 839 aa20.29■□□□□ 0.84
ITGB1-215ENST00000488494 PKN1Q16512 942 aa20.29■□□□□ 0.84
ITGB1-215ENST00000488494 UTP14CQ5TAP6 766 aaKnown RBP20.29■□□□□ 0.84
ITGB1-215ENST00000488494 LRRC8DQ7L1W4 858 aa20.29■□□□□ 0.84
ITGB1-215ENST00000488494 LARP6Q9BRS8 491 aaKnown RBP20.29■□□□□ 0.84
ITGB1-215ENST00000488494 RNF26Q9BY78 433 aaPredicted RBP20.29■□□□□ 0.84
ITGB1-215ENST00000488494 JADE2Q9NQC1 790 aa20.29■□□□□ 0.84
ITGB1-215ENST00000488494 ZNF215Q9UL58 517 aaPredicted RBP20.29■□□□□ 0.84
ITGB1-215ENST00000488494 CDH23Q9H251 3354 aa20.28■□□□□ 0.84
ITGB1-215ENST00000488494 ESYT2A0FGR8 921 aa20.28■□□□□ 0.84
ITGB1-215ENST00000488494 SELPP16109 830 aa20.28■□□□□ 0.84
ITGB1-215ENST00000488494 SREBF1P36956 1147 aa20.28■□□□□ 0.84
ITGB1-215ENST00000488494 PBX2P40425 430 aa20.28■□□□□ 0.84
ITGB1-215ENST00000488494 RBL2Q08999 1139 aa20.28■□□□□ 0.84
ITGB1-215ENST00000488494 PTK7Q13308 1070 aa20.28■□□□□ 0.84
ITGB1-215ENST00000488494 JAKMIP3Q5VZ66 844 aa20.28■□□□□ 0.84
ITGB1-215ENST00000488494 CCDC12Q8WUD4 166 aaPredicted RBP20.28■□□□□ 0.84
ITGB1-215ENST00000488494 WNT8BQ93098 351 aa20.28■□□□□ 0.84
ITGB1-215ENST00000488494 MXRA8Q9BRK3 442 aa20.28■□□□□ 0.84
ITGB1-215ENST00000488494 PDRG1Q9NUG6 133 aa20.28■□□□□ 0.84
ITGB1-215ENST00000488494 STXBP5LQ9Y2K9 1186 aa20.28■□□□□ 0.84
ITGB1-215ENST00000488494 TMEM265A0A087WTH1 108 aa20.27■□□□□ 0.84
ITGB1-215ENST00000488494 C17orf102A2RUQ5 167 aa20.27■□□□□ 0.84
ITGB1-215ENST00000488494 ADAMTS3O15072 1205 aa20.27■□□□□ 0.84
ITGB1-215ENST00000488494 CKBP12277 381 aa20.27■□□□□ 0.84
ITGB1-215ENST00000488494 IFNAR1P17181 557 aa20.27■□□□□ 0.84
ITGB1-215ENST00000488494 TCF7P36402 384 aaPredicted RBP20.27■□□□□ 0.84
ITGB1-215ENST00000488494 ARHGAP4P98171 946 aa20.27■□□□□ 0.84
ITGB1-215ENST00000488494 REXO1Q8N1G1 1221 aaKnown RBP20.27■□□□□ 0.84
ITGB1-215ENST00000488494 CYP2W1Q8TAV3 490 aa20.27■□□□□ 0.84
ITGB1-215ENST00000488494 TIFAQ96CG3 184 aa20.27■□□□□ 0.84
ITGB1-215ENST00000488494 PBX4Q9BYU1 374 aa20.27■□□□□ 0.84
ITGB1-215ENST00000488494 FTOQ9C0B1 505 aaKnown RBP eCLIP20.27■□□□□ 0.84
ITGB1-215ENST00000488494 ZMYND12Q9H0C1 365 aa20.27■□□□□ 0.84
ITGB1-215ENST00000488494 HOXC8P31273 242 aa20.26■□□□□ 0.83
ITGB1-215ENST00000488494 TRIM71Q2Q1W2 868 aaKnown RBP20.26■□□□□ 0.83
ITGB1-215ENST00000488494 CEP55Q53EZ4 464 aa20.26■□□□□ 0.83
ITGB1-215ENST00000488494 SERINC5Q86VE9 423 aa20.26■□□□□ 0.83
ITGB1-215ENST00000488494 SEMA6BQ9H3T3 888 aa20.26■□□□□ 0.83
ITGB1-215ENST00000488494 C6orf50Q9HD87 102 aa20.26■□□□□ 0.83
ITGB1-215ENST00000488494 JPH1Q9HDC5 661 aaPredicted RBP20.26■□□□□ 0.83
ITGB1-215ENST00000488494 KCNH7Q9NS40 1196 aa20.26■□□□□ 0.83
ITGB1-215ENST00000488494 SLC4A7Q9Y6M7 1214 aa20.26■□□□□ 0.83
ITGB1-215ENST00000488494 EYSQ5T1H1 3165 aa20.25■□□□□ 0.83
ITGB1-215ENST00000488494 ACTN1P12814 892 aa20.25■□□□□ 0.83
ITGB1-215ENST00000488494 STK3Q13188 491 aa20.25■□□□□ 0.83
ITGB1-215ENST00000488494 TRIM22Q8IYM9 498 aa20.25■□□□□ 0.83
ITGB1-215ENST00000488494 CCDC148Q8NFR7 591 aa20.25■□□□□ 0.83
ITGB1-215ENST00000488494 ATP6V0A1Q93050 837 aa20.25■□□□□ 0.83
ITGB1-215ENST00000488494 VPS54Q9P1Q0 977 aa20.25■□□□□ 0.83
ITGB1-215ENST00000488494 GBF1Q92538 1859 aa20.24■□□□□ 0.83
ITGB1-215ENST00000488494 CPLX1O14810 134 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms