RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 NOBOXO60393 691 aa6.09□□□□□ -1.43
VPS41-213ENST00000485955 RPL13P26373 211 aaKnown RBP6.09□□□□□ -1.43
VPS41-213ENST00000485955 HABP4Q5JVS0 413 aaKnown RBP6.09□□□□□ -1.43
VPS41-213ENST00000485955 ZNF761Q86XN6 746 aaPredicted RBP6.09□□□□□ -1.43
VPS41-213ENST00000485955 PHOSPHO1Q8TCT1 267 aa6.09□□□□□ -1.43
VPS41-213ENST00000485955 PTPRN2Q92932 1015 aa6.09□□□□□ -1.43
VPS41-213ENST00000485955 KISS1RQ969F8 398 aaPredicted RBP6.09□□□□□ -1.43
VPS41-213ENST00000485955 RELTQ969Z4 430 aa6.09□□□□□ -1.43
VPS41-213ENST00000485955 SRPK1Q96SB4 655 aaKnown RBP6.09□□□□□ -1.43
VPS41-213ENST00000485955 DNAJC2Q99543 621 aaKnown RBP6.09□□□□□ -1.43
VPS41-213ENST00000485955 DHRS4Q9BTZ2 278 aa6.09□□□□□ -1.43
VPS41-213ENST00000485955 PCDH18Q9HCL0 1135 aa6.09□□□□□ -1.43
VPS41-213ENST00000485955 RTEL1Q9NZ71 1219 aa6.09□□□□□ -1.43
VPS41-213ENST00000485955 PCDHA8Q9Y5H6 950 aa6.09□□□□□ -1.43
VPS41-213ENST00000485955 PRICKLE3O43900 615 aaPredicted RBP6.08□□□□□ -1.44
VPS41-213ENST00000485955 FOXD2O60548 495 aaPredicted RBP6.08□□□□□ -1.44
VPS41-213ENST00000485955 GNAT1P11488 350 aa6.08□□□□□ -1.44
VPS41-213ENST00000485955 SUMO1P63165 101 aaKnown RBP6.08□□□□□ -1.44
VPS41-213ENST00000485955 SPIRE1Q08AE8 756 aa6.08□□□□□ -1.44
VPS41-213ENST00000485955 TUSC3Q13454 348 aa6.08□□□□□ -1.44
VPS41-213ENST00000485955 NFIXQ14938 502 aa6.08□□□□□ -1.44
VPS41-213ENST00000485955 SF3A1Q15459 793 aaKnown RBP6.08□□□□□ -1.44
VPS41-213ENST00000485955 CYP4F22Q6NT55 531 aa6.08□□□□□ -1.44
VPS41-213ENST00000485955 FRMD5Q7Z6J6 570 aa6.08□□□□□ -1.44
VPS41-213ENST00000485955 PROSER1Q86XN7 944 aa6.08□□□□□ -1.44
VPS41-213ENST00000485955 TTLL6Q8N841 843 aa6.08□□□□□ -1.44
VPS41-213ENST00000485955 UHMK1Q8TAS1 419 aaKnown RBP6.08□□□□□ -1.44
VPS41-213ENST00000485955 ZSWIM3Q96MP5 696 aa6.08□□□□□ -1.44
VPS41-213ENST00000485955 NGRNQ9NPE2 291 aaKnown RBP6.08□□□□□ -1.44
VPS41-213ENST00000485955 MRPS23Q9Y3D9 190 aaKnown RBP6.08□□□□□ -1.44
VPS41-213ENST00000485955 DUSP10Q9Y6W6 482 aa6.08□□□□□ -1.44
VPS41-213ENST00000485955 FAM47E-STBD1D6RA91 191 aa6.07□□□□□ -1.44
VPS41-213ENST00000485955 DDX3XO00571 662 aaKnown RBP eCLIP6.07□□□□□ -1.44
VPS41-213ENST00000485955 MAFKO60675 156 aa6.07□□□□□ -1.44
VPS41-213ENST00000485955 LONRF2Q1L5Z9 754 aa6.07□□□□□ -1.44
VPS41-213ENST00000485955 TMC5Q6UXY8 1006 aa6.07□□□□□ -1.44
VPS41-213ENST00000485955 DPH6Q7L8W6 267 aa6.07□□□□□ -1.44
VPS41-213ENST00000485955 MAMDC2Q7Z304 686 aaPredicted RBP6.07□□□□□ -1.44
VPS41-213ENST00000485955 FERMT3Q86UX7 667 aa6.07□□□□□ -1.44
VPS41-213ENST00000485955 LILRB2Q8N423 598 aa6.07□□□□□ -1.44
VPS41-213ENST00000485955 PCDH19Q8TAB3 1148 aa6.07□□□□□ -1.44
VPS41-213ENST00000485955 ADAMTS17Q8TE56 1095 aa6.07□□□□□ -1.44
VPS41-213ENST00000485955 SH3RF2Q8TEC5 729 aa6.07□□□□□ -1.44
VPS41-213ENST00000485955 DDX1Q92499 740 aaKnown RBP6.07□□□□□ -1.44
VPS41-213ENST00000485955 MKL1Q969V6 931 aa6.07□□□□□ -1.44
VPS41-213ENST00000485955 IPO9Q96P70 1041 aaKnown RBP6.07□□□□□ -1.44
VPS41-213ENST00000485955 DSEQ9UL01 958 aa6.07□□□□□ -1.44
VPS41-213ENST00000485955 PCDHA9Q9Y5H5 950 aa6.07□□□□□ -1.44
VPS41-213ENST00000485955 MLLT6P55198 1093 aaPredicted RBP6.06□□□□□ -1.44
VPS41-213ENST00000485955 PAK1Q13153 545 aa6.06□□□□□ -1.44
VPS41-213ENST00000485955 PHF19Q5T6S3 580 aa6.06□□□□□ -1.44
VPS41-213ENST00000485955 SOGA3Q5TF21 947 aa6.06□□□□□ -1.44
VPS41-213ENST00000485955 MCTP2Q6DN12 878 aa6.06□□□□□ -1.44
VPS41-213ENST00000485955 TRIM48Q8IWZ4 208 aa6.06□□□□□ -1.44
VPS41-213ENST00000485955 JMYQ8N9B5 988 aa6.06□□□□□ -1.44
VPS41-213ENST00000485955 SREK1Q8WXA9 508 aaKnown RBP6.06□□□□□ -1.44
VPS41-213ENST00000485955 ALG1Q9BT22 464 aa6.06□□□□□ -1.44
VPS41-213ENST00000485955 HSPBP1Q9NZL4 362 aa6.06□□□□□ -1.44
VPS41-213ENST00000485955 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.05□□□□□ -1.44
VPS41-213ENST00000485955 B8ZZF3 427 aa6.05□□□□□ -1.44
VPS41-213ENST00000485955 ACOT7O00154 380 aa6.05□□□□□ -1.44
VPS41-213ENST00000485955 AQP7O14520 342 aa6.05□□□□□ -1.44
VPS41-213ENST00000485955 CRTAMO95727 393 aa6.05□□□□□ -1.44
VPS41-213ENST00000485955 SRGAP2CP0DJJ0 459 aa6.05□□□□□ -1.44
VPS41-213ENST00000485955 EPHA5P54756 1037 aa6.05□□□□□ -1.44
VPS41-213ENST00000485955 GABREP78334 506 aa6.05□□□□□ -1.44
VPS41-213ENST00000485955 GUCY1A3Q02108 690 aa6.05□□□□□ -1.44
VPS41-213ENST00000485955 MTDHQ86UE4 582 aaKnown RBP6.05□□□□□ -1.44
VPS41-213ENST00000485955 OSTM1Q86WC4 334 aa6.05□□□□□ -1.44
VPS41-213ENST00000485955 TXNDC5Q8NBS9 432 aaKnown RBP6.05□□□□□ -1.44
VPS41-213ENST00000485955 TTLL11Q8NHH1 800 aa6.05□□□□□ -1.44
VPS41-213ENST00000485955 TEPSINQ96N21 525 aa6.05□□□□□ -1.44
VPS41-213ENST00000485955 CD244Q9BZW8 370 aa6.05□□□□□ -1.44
VPS41-213ENST00000485955 PDGFDQ9GZP0 370 aaPredicted RBP6.05□□□□□ -1.44
VPS41-213ENST00000485955 SLC52A2Q9HAB3 445 aa6.05□□□□□ -1.44
VPS41-213ENST00000485955 USP40Q9NVE5 1235 aa6.05□□□□□ -1.44
VPS41-213ENST00000485955 ARVCFO00192 962 aa6.04□□□□□ -1.44
VPS41-213ENST00000485955 PRRG2O14669 202 aa6.04□□□□□ -1.44
VPS41-213ENST00000485955 WNT9AO14904 365 aa6.04□□□□□ -1.44
VPS41-213ENST00000485955 PYGMP11217 842 aa6.04□□□□□ -1.44
VPS41-213ENST00000485955 FAHP16930 419 aa6.04□□□□□ -1.44
VPS41-213ENST00000485955 IL13P35225 146 aa6.04□□□□□ -1.44
VPS41-213ENST00000485955 RGL3Q3MIN7 710 aa6.04□□□□□ -1.44
VPS41-213ENST00000485955 PAN2Q504Q3 1202 aaKnown RBP6.04□□□□□ -1.44
VPS41-213ENST00000485955 KCTD1Q719H9 257 aa6.04□□□□□ -1.44
VPS41-213ENST00000485955 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.04□□□□□ -1.44
VPS41-213ENST00000485955 CXorf38Q8TB03 319 aa6.04□□□□□ -1.44
VPS41-213ENST00000485955 SLC7A14Q8TBB6 771 aa6.04□□□□□ -1.44
VPS41-213ENST00000485955 LNPKQ9C0E8 428 aa6.04□□□□□ -1.44
VPS41-213ENST00000485955 CROTQ9UKG9 612 aa6.04□□□□□ -1.44
VPS41-213ENST00000485955 CBLCQ9ULV8 474 aa6.04□□□□□ -1.44
VPS41-213ENST00000485955 NCANO14594 1321 aa6.03□□□□□ -1.44
VPS41-213ENST00000485955 AMY2AP04746 511 aa6.03□□□□□ -1.44
VPS41-213ENST00000485955 CKMP06732 381 aa6.03□□□□□ -1.44
VPS41-213ENST00000485955 PDE6AP16499 860 aa6.03□□□□□ -1.44
VPS41-213ENST00000485955 ZNF28P17035 718 aa6.03□□□□□ -1.44
VPS41-213ENST00000485955 AMY2BP19961 511 aa6.03□□□□□ -1.44
VPS41-213ENST00000485955 GJA9P57773 515 aa6.03□□□□□ -1.44
VPS41-213ENST00000485955 ZFYVE27Q5T4F4 411 aa6.03□□□□□ -1.44
VPS41-213ENST00000485955 ARHGAP36Q6ZRI8 547 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms