RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 TOB2Q14106 344 aaPredicted RBP9.17□□□□□ -0.94
USP40-216ENST00000485943 NEDD9Q14511 834 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 PGM5Q15124 567 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 KCNA10Q16322 511 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 C8orf34Q49A92 452 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 DUSP28Q4G0W2 176 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 SWT1Q5T5J6 900 aaKnown RBP9.17□□□□□ -0.94
USP40-216ENST00000485943 JAKMIP3Q5VZ66 844 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 PPP2R2DQ66LE6 453 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 XRRA1Q6P2D8 792 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 FBXL16Q8N461 479 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 TRPV1Q8NER1 839 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 DIS3LQ8TF46 1054 aaKnown RBP9.17□□□□□ -0.94
USP40-216ENST00000485943 TBC1D5Q92609 795 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 LENG1Q96BZ8 264 aaPredicted RBP9.17□□□□□ -0.94
USP40-216ENST00000485943 SDF4Q9BRK5 362 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 PDCD2LQ9BRP1 358 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 TSEN34Q9BSV6 310 aaKnown RBP9.17□□□□□ -0.94
USP40-216ENST00000485943 SH2B1Q9NRF2 756 aaPredicted RBP9.17□□□□□ -0.94
USP40-216ENST00000485943 RTEL1Q9NZ71 1219 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 ORC3Q9UBD5 711 aaPredicted RBP9.17□□□□□ -0.94
USP40-216ENST00000485943 PCDHA6Q9UN73 950 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 VPS9D1Q9Y2B5 631 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 PCDHA8Q9Y5H6 950 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 MYH7BA7E2Y1 1941 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 A0A0U1RQG5 324 aaPredicted RBP9.16□□□□□ -0.94
USP40-216ENST00000485943 POTEB3A0JP26 581 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 FIBPO43427 364 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 KPNA6O60684 536 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 PQBP1O60828 265 aaKnown RBP9.16□□□□□ -0.94
USP40-216ENST00000485943 PPP1R11O60927 126 aaPredicted RBP9.16□□□□□ -0.94
USP40-216ENST00000485943 ASGR1P07306 291 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 RFC5P40937 340 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 RGS19P49795 217 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 BEX3Q00994 111 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 LAMC2Q13753 1193 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 DGKDQ16760 1214 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 POTEBQ6S5H4 581 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 TEX2Q8IWB9 1127 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 ZNF687Q8N1G0 1237 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 RDH13Q8NBN7 331 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 TNPO1Q92973 898 aaKnown RBP9.16□□□□□ -0.94
USP40-216ENST00000485943 SHISA4Q96DD7 197 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 SPATA33Q96N06 139 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 KATNAL1Q9BW62 490 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 ANO3Q9BYT9 981 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 AGXT2Q9BYV1 514 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 RIC8AQ9NPQ8 531 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 SH3GLB2Q9NR46 395 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 PDGFCQ9NRA1 345 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 PKD2L1Q9P0L9 805 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 VPS54Q9P1Q0 977 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 Q9Y3F1 56 aa9.16□□□□□ -0.94
USP40-216ENST00000485943 KIAA1217Q5T5P2 1943 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 CENPFP49454 3210 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.15□□□□□ -0.94
USP40-216ENST00000485943 A6NJR5 290 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 STXBP3O00186 592 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 PIK3CDO00329 1044 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 PFKFB2O60825 505 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 GGPS1O95749 300 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 TGFB3P10600 412 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 SMPD1P17405 629 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 NDUFV2P19404 249 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 GCGRP47871 477 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 ACLYP53396 1101 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 GJA9P57773 515 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 HMGN5P82970 282 aaKnown RBP9.15□□□□□ -0.94
USP40-216ENST00000485943 SCRN1Q12765 414 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 MTMR1Q13613 665 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 LY6KQ17RY6 165 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 LCE2DQ5TA82 110 aaPredicted RBP9.15□□□□□ -0.94
USP40-216ENST00000485943 GALNT17Q6IS24 598 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 CCDC83Q8IWF9 413 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 ALG1Q9BT22 464 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 AZI2Q9H6S1 392 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 ZNF215Q9UL58 517 aaPredicted RBP9.15□□□□□ -0.94
USP40-216ENST00000485943 TPCN1Q9ULQ1 816 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 SAMM50Q9Y512 469 aa9.15□□□□□ -0.94
USP40-216ENST00000485943 DDX49Q9Y6V7 483 aaKnown RBP9.15□□□□□ -0.94
USP40-216ENST00000485943 A0A1W2PQ45 241 aaPredicted RBP9.14□□□□□ -0.95
USP40-216ENST00000485943 A0A1W2PQY0 241 aa9.14□□□□□ -0.95
USP40-216ENST00000485943 FAM205CA6NFA0 338 aa9.14□□□□□ -0.95
USP40-216ENST00000485943 H3BQV1 296 aa9.14□□□□□ -0.95
USP40-216ENST00000485943 RAG1P15918 1043 aa9.14□□□□□ -0.95
USP40-216ENST00000485943 RTP1P59025 263 aa9.14□□□□□ -0.95
USP40-216ENST00000485943 SETQ01105 290 aaPredicted RBP9.14□□□□□ -0.95
USP40-216ENST00000485943 PCNX4Q63HM2 1172 aa9.14□□□□□ -0.95
USP40-216ENST00000485943 CXCL17Q6UXB2 119 aa9.14□□□□□ -0.95
USP40-216ENST00000485943 SLC39A5Q6ZMH5 540 aa9.14□□□□□ -0.95
USP40-216ENST00000485943 C7orf31Q8N865 590 aa9.14□□□□□ -0.95
USP40-216ENST00000485943 NECAB1Q8N987 351 aa9.14□□□□□ -0.95
USP40-216ENST00000485943 GTF3C6Q969F1 213 aa9.14□□□□□ -0.95
USP40-216ENST00000485943 PGBD1Q96JS3 809 aa9.14□□□□□ -0.95
USP40-216ENST00000485943 NAP1L4Q99733 375 aaKnown RBP9.14□□□□□ -0.95
USP40-216ENST00000485943 MTG1Q9BT17 334 aaPredicted RBP9.14□□□□□ -0.95
USP40-216ENST00000485943 SEZ6LQ9BYH1 1024 aa9.14□□□□□ -0.95
USP40-216ENST00000485943 ALDH8A1Q9H2A2 487 aaPredicted RBP9.14□□□□□ -0.95
USP40-216ENST00000485943 TMEM39AQ9NV64 488 aa9.14□□□□□ -0.95
USP40-216ENST00000485943 COL20A1Q9P218 1284 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms