RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 UBA1P22314 1058 aaKnown RBP16.07■□□□□ 0.16
SQSTM1-208ENST00000485412 NT5C2P49902 561 aa16.07■□□□□ 0.16
SQSTM1-208ENST00000485412 AAMPQ13685 434 aa16.07■□□□□ 0.16
SQSTM1-208ENST00000485412 LAMC2Q13753 1193 aa16.07■□□□□ 0.16
SQSTM1-208ENST00000485412 COL9A3Q14050 684 aaPredicted RBP16.07■□□□□ 0.16
SQSTM1-208ENST00000485412 GRM4Q14833 912 aa16.07■□□□□ 0.16
SQSTM1-208ENST00000485412 PTPROQ16827 1216 aa16.07■□□□□ 0.16
SQSTM1-208ENST00000485412 CELF3Q5SZQ8 465 aaKnown RBP16.07■□□□□ 0.16
SQSTM1-208ENST00000485412 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.07■□□□□ 0.16
SQSTM1-208ENST00000485412 EMSYQ7Z589 1322 aa16.07■□□□□ 0.16
SQSTM1-208ENST00000485412 PUS10Q3MIT2 529 aaKnown RBP16.06■□□□□ 0.16
SQSTM1-208ENST00000485412 TIGD5Q53EQ6 642 aa16.06■□□□□ 0.16
SQSTM1-208ENST00000485412 TTC22Q5TAA0 569 aa16.06■□□□□ 0.16
SQSTM1-208ENST00000485412 VSIG10LQ86VR7 867 aa16.06■□□□□ 0.16
SQSTM1-208ENST00000485412 FCHSD1Q86WN1 690 aa16.06■□□□□ 0.16
SQSTM1-208ENST00000485412 PIBF1Q8WXW3 757 aa16.06■□□□□ 0.16
SQSTM1-208ENST00000485412 MRPL38Q96DV4 380 aaKnown RBP16.06■□□□□ 0.16
SQSTM1-208ENST00000485412 SPATA33Q96N06 139 aa16.06■□□□□ 0.16
SQSTM1-208ENST00000485412 C16orf70Q9BSU1 422 aa16.06■□□□□ 0.16
SQSTM1-208ENST00000485412 PIEZO1Q92508 2521 aa16.06■□□□□ 0.16
SQSTM1-208ENST00000485412 GRXCR2A6NFK2 248 aa16.05■□□□□ 0.16
SQSTM1-208ENST00000485412 RSPH10B2B2RC85 870 aa16.05■□□□□ 0.16
SQSTM1-208ENST00000485412 RSPH10BP0C881 870 aa16.05■□□□□ 0.16
SQSTM1-208ENST00000485412 THPOP40225 353 aa16.05■□□□□ 0.16
SQSTM1-208ENST00000485412 ANTXR2P58335 489 aa16.05■□□□□ 0.16
SQSTM1-208ENST00000485412 MKRN4PQ13434 485 aaPredicted RBP16.05■□□□□ 0.16
SQSTM1-208ENST00000485412 EP400NLQ6ZTU2 488 aa16.05■□□□□ 0.16
SQSTM1-208ENST00000485412 DBF4BQ8NFT6 615 aa16.05■□□□□ 0.16
SQSTM1-208ENST00000485412 SAMD11Q96NU1 681 aa16.05■□□□□ 0.16
SQSTM1-208ENST00000485412 RIOX1Q9H6W3 641 aa16.05■□□□□ 0.16
SQSTM1-208ENST00000485412 RALGAPA2Q2PPJ7 1873 aa16.04■□□□□ 0.16
SQSTM1-208ENST00000485412 H3BQ06 376 aaPredicted RBP16.04■□□□□ 0.16
SQSTM1-208ENST00000485412 MRPS9P82933 396 aaKnown RBP16.04■□□□□ 0.16
SQSTM1-208ENST00000485412 TROAPQ12815 778 aa16.04■□□□□ 0.16
SQSTM1-208ENST00000485412 SEMA3FQ13275 785 aa16.04■□□□□ 0.16
SQSTM1-208ENST00000485412 EPC2Q52LR7 807 aa16.04■□□□□ 0.16
SQSTM1-208ENST00000485412 TRIM50Q86XT4 487 aa16.04■□□□□ 0.16
SQSTM1-208ENST00000485412 YME1L1Q96TA2 773 aa16.04■□□□□ 0.16
SQSTM1-208ENST00000485412 FAM50BQ9Y247 325 aa16.04■□□□□ 0.16
SQSTM1-208ENST00000485412 KAT6AQ92794 2004 aa16.04■□□□□ 0.16
SQSTM1-208ENST00000485412 GCOM1H8Y6P7 765 aaPredicted RBP16.03■□□□□ 0.16
SQSTM1-208ENST00000485412 IFIT3O14879 490 aaKnown RBP16.03■□□□□ 0.16
SQSTM1-208ENST00000485412 PPFIA4O75335 1185 aa16.03■□□□□ 0.16
SQSTM1-208ENST00000485412 POLR2MP0CAP2 368 aa16.03■□□□□ 0.16
SQSTM1-208ENST00000485412 CHMLP26374 656 aa16.03■□□□□ 0.16
SQSTM1-208ENST00000485412 CCND2P30279 289 aa16.03■□□□□ 0.16
SQSTM1-208ENST00000485412 HTRA4P83105 476 aaPredicted RBP16.03■□□□□ 0.16
SQSTM1-208ENST00000485412 GPM6BQ13491 265 aa16.03■□□□□ 0.16
SQSTM1-208ENST00000485412 SERINC5Q86VE9 423 aa16.03■□□□□ 0.16
SQSTM1-208ENST00000485412 BANK1Q8NDB2 785 aa16.03■□□□□ 0.16
SQSTM1-208ENST00000485412 NEK9Q8TD19 979 aa16.03■□□□□ 0.16
SQSTM1-208ENST00000485412 SP7Q8TDD2 431 aaPredicted RBP16.03■□□□□ 0.16
SQSTM1-208ENST00000485412 SEPT8Q92599 483 aa16.03■□□□□ 0.16
SQSTM1-208ENST00000485412 MYL10Q9BUA6 226 aa16.03■□□□□ 0.16
SQSTM1-208ENST00000485412 MYO7AQ13402 2215 aa16.03■□□□□ 0.16
SQSTM1-208ENST00000485412 FRMPD4Q14CM0 1322 aa16.02■□□□□ 0.16
SQSTM1-208ENST00000485412 E7EWF7 191 aa16.02■□□□□ 0.16
SQSTM1-208ENST00000485412 TREHO43280 583 aa16.02■□□□□ 0.16
SQSTM1-208ENST00000485412 DCXO43602 365 aa16.02■□□□□ 0.16
SQSTM1-208ENST00000485412 UPP2O95045 317 aa16.02■□□□□ 0.16
SQSTM1-208ENST00000485412 LGALS2P05162 132 aa16.02■□□□□ 0.16
SQSTM1-208ENST00000485412 HOXC8P31273 242 aa16.02■□□□□ 0.16
SQSTM1-208ENST00000485412 KCNV1Q6PIU1 500 aa16.02■□□□□ 0.16
SQSTM1-208ENST00000485412 ATP6V0A1Q93050 837 aa16.02■□□□□ 0.16
SQSTM1-208ENST00000485412 RTEL1Q9NZ71 1219 aa16.02■□□□□ 0.16
SQSTM1-208ENST00000485412 SUPT16HQ9Y5B9 1047 aaKnown RBP16.02■□□□□ 0.16
SQSTM1-208ENST00000485412 C5orf42Q9H799 3197 aa16.01■□□□□ 0.15
SQSTM1-208ENST00000485412 PNMA6FA0A0J9YX94 578 aa16.01■□□□□ 0.15
SQSTM1-208ENST00000485412 C17orf102A2RUQ5 167 aa16.01■□□□□ 0.15
SQSTM1-208ENST00000485412 H3BNC9 293 aa16.01■□□□□ 0.15
SQSTM1-208ENST00000485412 CTSHP09668 335 aa16.01■□□□□ 0.15
SQSTM1-208ENST00000485412 SMIM10L2AP0DMW4 78 aa16.01■□□□□ 0.15
SQSTM1-208ENST00000485412 SMIM10L2BP0DMW5 78 aa16.01■□□□□ 0.15
SQSTM1-208ENST00000485412 PLEKHG4Q58EX7 1191 aa16.01■□□□□ 0.15
SQSTM1-208ENST00000485412 TCEAL5Q5H9L2 206 aa16.01■□□□□ 0.15
SQSTM1-208ENST00000485412 TMEM192Q8IY95 271 aa16.01■□□□□ 0.15
SQSTM1-208ENST00000485412 PABPC5Q96DU9 382 aaKnown RBP16.01■□□□□ 0.15
SQSTM1-208ENST00000485412 RNPEPQ9H4A4 650 aa16.01■□□□□ 0.15
SQSTM1-208ENST00000485412 NSUN3Q9H649 340 aaKnown RBP16.01■□□□□ 0.15
SQSTM1-208ENST00000485412 MLXIPQ9HAP2 919 aa16.01■□□□□ 0.15
SQSTM1-208ENST00000485412 MAP3K20Q9NYL2 800 aaKnown RBP16.01■□□□□ 0.15
SQSTM1-208ENST00000485412 LOXHD1Q8IVV2 1947 aa16.01■□□□□ 0.15
SQSTM1-208ENST00000485412 H3BRB1 525 aa16■□□□□ 0.15
SQSTM1-208ENST00000485412 MRE11P49959 708 aa16■□□□□ 0.15
SQSTM1-208ENST00000485412 IRX6P78412 446 aaPredicted RBP16■□□□□ 0.15
SQSTM1-208ENST00000485412 SP4Q02446 784 aa16■□□□□ 0.15
SQSTM1-208ENST00000485412 TRDNQ13061 729 aa16■□□□□ 0.15
SQSTM1-208ENST00000485412 WTAPQ15007 396 aa16■□□□□ 0.15
SQSTM1-208ENST00000485412 USP17L6PQ6QN14 398 aa16■□□□□ 0.15
SQSTM1-208ENST00000485412 CYFIP1Q7L576 1253 aa16■□□□□ 0.15
SQSTM1-208ENST00000485412 MB21D2Q8IYB1 491 aaPredicted RBP16■□□□□ 0.15
SQSTM1-208ENST00000485412 IGDCC4Q8TDY8 1250 aa16■□□□□ 0.15
SQSTM1-208ENST00000485412 TOP1MTQ969P6 601 aa16■□□□□ 0.15
SQSTM1-208ENST00000485412 INPP4AQ96PE3 977 aaPredicted RBP16■□□□□ 0.15
SQSTM1-208ENST00000485412 TUT1Q9H6E5 874 aaKnown RBP16■□□□□ 0.15
SQSTM1-208ENST00000485412 SETD4Q9NVD3 440 aa16■□□□□ 0.15
SQSTM1-208ENST00000485412 CLDND1Q9NY35 253 aa16■□□□□ 0.15
SQSTM1-208ENST00000485412 PRKAG3Q9UGI9 489 aa16■□□□□ 0.15
SQSTM1-208ENST00000485412 U3KPZ7 1027 aaPredicted RBP16■□□□□ 0.15
SQSTM1-208ENST00000485412 SPATA31C2B4DYI2 1134 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms