RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 GRK3P35626 688 aa5.48□□□□□ -1.53
VPS50-217ENST00000485140 MAGEA10P43363 369 aaPredicted RBP5.48□□□□□ -1.53
VPS50-217ENST00000485140 PRSS53Q2L4Q9 553 aa5.48□□□□□ -1.53
VPS50-217ENST00000485140 VASNQ6EMK4 673 aa5.48□□□□□ -1.53
VPS50-217ENST00000485140 GLB1LQ6UWU2 654 aa5.48□□□□□ -1.53
VPS50-217ENST00000485140 NSMFQ6X4W1 530 aa5.48□□□□□ -1.53
VPS50-217ENST00000485140 LBX2Q6XYB7 198 aa5.48□□□□□ -1.53
VPS50-217ENST00000485140 USP53Q70EK8 1073 aa5.48□□□□□ -1.53
VPS50-217ENST00000485140 SCUBE1Q8IWY4 988 aa5.48□□□□□ -1.53
VPS50-217ENST00000485140 NLGN4XQ8N0W4 816 aa5.48□□□□□ -1.53
VPS50-217ENST00000485140 KLHL36Q8N4N3 616 aa5.48□□□□□ -1.53
VPS50-217ENST00000485140 HNRNPLLQ8WVV9 542 aaKnown RBP5.48□□□□□ -1.53
VPS50-217ENST00000485140 GPR20Q99678 358 aa5.48□□□□□ -1.53
VPS50-217ENST00000485140 DLL4Q9NR61 685 aa5.48□□□□□ -1.53
VPS50-217ENST00000485140 PRICKLE3O43900 615 aaPredicted RBP5.47□□□□□ -1.53
VPS50-217ENST00000485140 DLX3O60479 287 aa5.47□□□□□ -1.53
VPS50-217ENST00000485140 PABPC1P11940 636 aaKnown RBP5.47□□□□□ -1.53
VPS50-217ENST00000485140 RBM25P49756 843 aaKnown RBP5.47□□□□□ -1.53
VPS50-217ENST00000485140 RASGRF1Q13972 1273 aa5.47□□□□□ -1.53
VPS50-217ENST00000485140 ZXDCQ2QGD7 858 aaPredicted RBP5.47□□□□□ -1.53
VPS50-217ENST00000485140 OTOP3Q7RTS5 596 aa5.47□□□□□ -1.53
VPS50-217ENST00000485140 ADGRG2Q8IZP9 1017 aa5.47□□□□□ -1.53
VPS50-217ENST00000485140 TXNDC5Q8NBS9 432 aaKnown RBP5.47□□□□□ -1.53
VPS50-217ENST00000485140 UHMK1Q8TAS1 419 aaKnown RBP5.47□□□□□ -1.53
VPS50-217ENST00000485140 MICAL1Q8TDZ2 1067 aa5.47□□□□□ -1.53
VPS50-217ENST00000485140 CDK5RAP1Q96SZ6 601 aaKnown RBP5.47□□□□□ -1.53
VPS50-217ENST00000485140 CCDC113Q9H0I3 377 aa5.47□□□□□ -1.53
VPS50-217ENST00000485140 SEMA4AQ9H3S1 761 aa5.47□□□□□ -1.53
VPS50-217ENST00000485140 MSL2Q9HCI7 577 aa5.47□□□□□ -1.53
VPS50-217ENST00000485140 SMPD4Q9NXE4 827 aa5.47□□□□□ -1.53
VPS50-217ENST00000485140 SIRPGQ9P1W8 387 aa5.47□□□□□ -1.53
VPS50-217ENST00000485140 DDX3XO00571 662 aaKnown RBP eCLIP5.46□□□□□ -1.54
VPS50-217ENST00000485140 LAMTOR5O43504 91 aa5.46□□□□□ -1.54
VPS50-217ENST00000485140 FBXO21O94952 628 aa5.46□□□□□ -1.54
VPS50-217ENST00000485140 ATP2B1P20020 1258 aa5.46□□□□□ -1.54
VPS50-217ENST00000485140 GJA4P35212 333 aa5.46□□□□□ -1.54
VPS50-217ENST00000485140 IL13P35225 146 aa5.46□□□□□ -1.54
VPS50-217ENST00000485140 STAT5AP42229 794 aa5.46□□□□□ -1.54
VPS50-217ENST00000485140 ADAM9Q13443 819 aa5.46□□□□□ -1.54
VPS50-217ENST00000485140 REXO1L1PQ8IX06 675 aa5.46□□□□□ -1.54
VPS50-217ENST00000485140 DDX1Q92499 740 aaKnown RBP5.46□□□□□ -1.54
VPS50-217ENST00000485140 YTHDC1Q96MU7 727 aaKnown RBP5.46□□□□□ -1.54
VPS50-217ENST00000485140 C8orf37Q96NL8 207 aa5.46□□□□□ -1.54
VPS50-217ENST00000485140 ZNF536O15090 1300 aa5.46□□□□□ -1.54
VPS50-217ENST00000485140 C1QTNF3-AMACRE9PGA6 284 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 PDPK1O15530 556 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 PRODHO43272 600 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 SUMO1P63165 101 aaKnown RBP5.45□□□□□ -1.54
VPS50-217ENST00000485140 SF1Q15637 639 aaKnown RBP5.45□□□□□ -1.54
VPS50-217ENST00000485140 ZNF568Q3ZCX4 644 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 CPZQ66K79 652 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 MCTP2Q6DN12 878 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 DENND5AQ6IQ26 1287 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 PKN3Q6P5Z2 889 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 HHIPL2Q6UWX4 724 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 DPP8Q6V1X1 898 aaPredicted RBP5.45□□□□□ -1.54
VPS50-217ENST00000485140 EP400NLQ6ZTU2 488 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 FERMT3Q86UX7 667 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 IFNL2Q8IZJ0 200 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 FAM26EQ8N5C1 309 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 ARRDC4Q8NCT1 418 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 CHST13Q8NET6 341 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 SPATA9Q9BWV2 254 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 LGR4Q9BXB1 951 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 C1QTNF3Q9BXJ4 246 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 ST7Q9NRC1 585 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 PPP1R1BQ9UD71 204 aaPredicted RBP5.45□□□□□ -1.54
VPS50-217ENST00000485140 DSEQ9UL01 958 aa5.45□□□□□ -1.54
VPS50-217ENST00000485140 CCDC163A0A0D9SF12 145 aa5.44□□□□□ -1.54
VPS50-217ENST00000485140 LRG1P02750 347 aa5.44□□□□□ -1.54
VPS50-217ENST00000485140 ENO2P09104 434 aaPredicted RBP5.44□□□□□ -1.54
VPS50-217ENST00000485140 LCP1P13796 627 aa5.44□□□□□ -1.54
VPS50-217ENST00000485140 FAHP16930 419 aa5.44□□□□□ -1.54
VPS50-217ENST00000485140 EPHA5P54756 1037 aa5.44□□□□□ -1.54
VPS50-217ENST00000485140 SMAD2Q15796 467 aaKnown RBP5.44□□□□□ -1.54
VPS50-217ENST00000485140 MTERF2Q49AM1 385 aa5.44□□□□□ -1.54
VPS50-217ENST00000485140 ARHGEF18Q6ZSZ5 1173 aa5.44□□□□□ -1.54
VPS50-217ENST00000485140 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.44□□□□□ -1.54
VPS50-217ENST00000485140 CELF2-AS1Q8N7Q2 184 aa5.44□□□□□ -1.54
VPS50-217ENST00000485140 PTPRN2Q92932 1015 aa5.44□□□□□ -1.54
VPS50-217ENST00000485140 RBM15Q96T37 977 aaKnown RBP eCLIP5.44□□□□□ -1.54
VPS50-217ENST00000485140 CDC6Q99741 560 aa5.44□□□□□ -1.54
VPS50-217ENST00000485140 CDIP1Q9H305 208 aa5.44□□□□□ -1.54
VPS50-217ENST00000485140 ARHGEF4Q9NR80 690 aa5.44□□□□□ -1.54
VPS50-217ENST00000485140 IGSF5Q9NSI5 407 aa5.44□□□□□ -1.54
VPS50-217ENST00000485140 INVSQ9Y283 1065 aa5.44□□□□□ -1.54
VPS50-217ENST00000485140 MSRB2Q9Y3D2 182 aa5.44□□□□□ -1.54
VPS50-217ENST00000485140 ADAMTS20P59510 1910 aa5.44□□□□□ -1.54
VPS50-217ENST00000485140 ARNTLO00327 626 aa5.43□□□□□ -1.54
VPS50-217ENST00000485140 WNT9AO14904 365 aa5.43□□□□□ -1.54
VPS50-217ENST00000485140 CUTAO60888 179 aa5.43□□□□□ -1.54
VPS50-217ENST00000485140 SOD2P04179 222 aa5.43□□□□□ -1.54
VPS50-217ENST00000485140 EPHB4P54760 987 aa5.43□□□□□ -1.54
VPS50-217ENST00000485140 GABREP78334 506 aa5.43□□□□□ -1.54
VPS50-217ENST00000485140 PAK1Q13153 545 aa5.43□□□□□ -1.54
VPS50-217ENST00000485140 TBC1D10BQ4KMP7 808 aaPredicted RBP5.43□□□□□ -1.54
VPS50-217ENST00000485140 FAM47CQ5HY64 1035 aa5.43□□□□□ -1.54
VPS50-217ENST00000485140 HABP4Q5JVS0 413 aaKnown RBP5.43□□□□□ -1.54
VPS50-217ENST00000485140 SLFN13Q68D06 897 aa5.43□□□□□ -1.54
VPS50-217ENST00000485140 TRMT10BQ6PF06 316 aaKnown RBP5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms