RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 PGM2Q96G03 612 aa15.12■□□□□ 0.01
HDAC1-206ENST00000476391 LTV1Q96GA3 475 aaPredicted RBP15.12■□□□□ 0.01
HDAC1-206ENST00000476391 FGD4Q96M96 766 aa15.12■□□□□ 0.01
HDAC1-206ENST00000476391 RPS6KC1Q96S38 1066 aa15.12■□□□□ 0.01
HDAC1-206ENST00000476391 UBE2OQ9C0C9 1292 aaKnown RBP15.12■□□□□ 0.01
HDAC1-206ENST00000476391 ZCWPW1Q9H0M4 648 aa15.12■□□□□ 0.01
HDAC1-206ENST00000476391 USP15Q9Y4E8 981 aaPredicted RBP15.12■□□□□ 0.01
HDAC1-206ENST00000476391 TMEM94Q12767 1356 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 BUB1O43683 1085 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 PENKP01210 267 aaPredicted RBP15.11■□□□□ 0.01
HDAC1-206ENST00000476391 PDHA1P08559 390 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 PABPC1LQ4VXU2 614 aaKnown RBP15.11■□□□□ 0.01
HDAC1-206ENST00000476391 TMEM67Q5HYA8 995 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 OR52E8Q6IFG1 317 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 IRGCQ6NXR0 463 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 TTI2Q6NXR4 508 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 TBC1D10CQ8IV04 446 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 OXER1Q8TDS5 423 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 MYL10Q9BUA6 226 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 MMADHCQ9H3L0 296 aaPredicted RBP15.11■□□□□ 0.01
HDAC1-206ENST00000476391 INTS9Q9NV88 658 aaKnown RBP15.11■□□□□ 0.01
HDAC1-206ENST00000476391 DNAAF2Q9NVR5 837 aaKnown RBP15.11■□□□□ 0.01
HDAC1-206ENST00000476391 DENND2AQ9ULE3 1009 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 SSU72P8A0A1W2PR75 194 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 GPAA1O43292 621 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 SUN1O94901 812 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 PEX5P50542 639 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 MYBPC3Q14896 1274 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 AMOTQ4VCS5 1084 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 KIF2BQ8N4N8 673 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 SCFD2Q8WU76 684 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 OPTNQ96CV9 577 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 MYD88Q99836 296 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 TRIM7Q9C029 511 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 NEUROG2Q9H2A3 272 aa15.11■□□□□ 0.01
HDAC1-206ENST00000476391 RBAK-RBAKDNI3L0D1 243 aa15.1■□□□□ 0.01
HDAC1-206ENST00000476391 CCNB1P14635 433 aa15.1■□□□□ 0.01
HDAC1-206ENST00000476391 RASSF7Q02833 373 aa15.1■□□□□ 0.01
HDAC1-206ENST00000476391 PDIA6Q15084 440 aa15.1■□□□□ 0.01
HDAC1-206ENST00000476391 ASTE1Q2TB18 679 aaPredicted RBP15.1■□□□□ 0.01
HDAC1-206ENST00000476391 AKAP4Q5JQC9 854 aa15.1■□□□□ 0.01
HDAC1-206ENST00000476391 MAEAQ7L5Y9 396 aa15.1■□□□□ 0.01
HDAC1-206ENST00000476391 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.1■□□□□ 0.01
HDAC1-206ENST00000476391 STAG2Q8N3U4 1231 aa15.1■□□□□ 0.01
HDAC1-206ENST00000476391 ANKRD13CQ8N6S4 541 aa15.1■□□□□ 0.01
HDAC1-206ENST00000476391 RBM17Q96I25 401 aaKnown RBP15.1■□□□□ 0.01
HDAC1-206ENST00000476391 ADAM7Q9H2U9 754 aa15.1■□□□□ 0.01
HDAC1-206ENST00000476391 LUC7LQ9NQ29 371 aaKnown RBP15.1■□□□□ 0.01
HDAC1-206ENST00000476391 DLGAP2Q9P1A6 1054 aa15.1■□□□□ 0.01
HDAC1-206ENST00000476391 B4E1Z4 1266 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 PALMO75781 387 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 MYL1P05976 194 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 DIXDC1Q155Q3 683 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 DBN1Q16643 649 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 RNF220Q5VTB9 566 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 ATG9AQ7Z3C6 839 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 CSGALNACT2Q8N6G5 542 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 STK32AQ8WU08 396 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 SELENOSQ9BQE4 189 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 NOC4LQ9BVI4 516 aaKnown RBP15.09■□□□□ 0.01
HDAC1-206ENST00000476391 FAM192AQ9GZU8 254 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 PUS7LQ9H0K6 701 aaKnown RBP15.09■□□□□ 0.01
HDAC1-206ENST00000476391 RXFP1Q9HBX9 757 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 ATXN10Q9UBB4 475 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 ZNF232Q9UNY5 417 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 ARHGAP23Q9P227 1491 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 LAMB4A4D0S4 1761 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 RAPGEF3O95398 923 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 IL15P40933 162 aaPredicted RBP15.09■□□□□ 0.01
HDAC1-206ENST00000476391 RFC5P40937 340 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 STAT6P42226 847 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 RAD23BP54727 409 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 ATP2C1P98194 919 aaPredicted RBP15.09■□□□□ 0.01
HDAC1-206ENST00000476391 MIIPQ5JXC2 388 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 FBXO31Q5XUX0 539 aaPredicted RBP15.09■□□□□ 0.01
HDAC1-206ENST00000476391 LCA5Q86VQ0 697 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 DDX42Q86XP3 938 aaKnown RBP eCLIP15.09■□□□□ 0.01
HDAC1-206ENST00000476391 MYLK4Q86YV6 388 aaPredicted RBP15.09■□□□□ 0.01
HDAC1-206ENST00000476391 DHTKD1Q96HY7 919 aaPredicted RBP15.09■□□□□ 0.01
HDAC1-206ENST00000476391 PRMT1Q99873 361 aaKnown RBP15.09■□□□□ 0.01
HDAC1-206ENST00000476391 CTTNBP2NLQ9P2B4 639 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 SCOCQ9UIL1 159 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 FBXO3Q9UK99 471 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 TMCO1Q9UM00 188 aa15.09■□□□□ 0.01
HDAC1-206ENST00000476391 NUDT17P0C025 328 aa15.08■□□□□ 0.01
HDAC1-206ENST00000476391 TPBGLP0DKB5 382 aa15.08■□□□□ 0.01
HDAC1-206ENST00000476391 FLT3P36888 993 aa15.08■□□□□ 0.01
HDAC1-206ENST00000476391 FKBP4Q02790 459 aaKnown RBP eCLIP15.08■□□□□ 0.01
HDAC1-206ENST00000476391 DHX9Q08211 1270 aaKnown RBP15.08■□□□□ 0.01
HDAC1-206ENST00000476391 PARP6Q2NL67 630 aa15.08■□□□□ 0.01
HDAC1-206ENST00000476391 CROCCP2Q86T23 111 aa15.08■□□□□ 0.01
HDAC1-206ENST00000476391 CRACR2BQ8N4Y2 399 aaPredicted RBP15.08■□□□□ 0.01
HDAC1-206ENST00000476391 ENDOVQ8N8Q3 282 aaKnown RBP15.08■□□□□ 0.01
HDAC1-206ENST00000476391 NKX2-3Q8TAU0 364 aa15.08■□□□□ 0.01
HDAC1-206ENST00000476391 SEC14L1Q92503 715 aa15.08■□□□□ 0.01
HDAC1-206ENST00000476391 FAM136AQ96C01 138 aa15.08■□□□□ 0.01
HDAC1-206ENST00000476391 CNOT6LQ96LI5 555 aaKnown RBP15.08■□□□□ 0.01
HDAC1-206ENST00000476391 GOPCQ9HD26 462 aa15.08■□□□□ 0.01
HDAC1-206ENST00000476391 CYP39A1Q9NYL5 469 aa15.08■□□□□ 0.01
HDAC1-206ENST00000476391 BICDL2A1A5D9 508 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms