RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 BCAS3Q9H6U6 928 aa17.28■□□□□ 0.36
LIMS1-212ENST00000474038 ORC3Q9UBD5 711 aaPredicted RBP17.28■□□□□ 0.36
LIMS1-212ENST00000474038 UMODL1Q5DID0 1318 aa17.27■□□□□ 0.36
LIMS1-212ENST00000474038 COL6A3P12111 3177 aa17.27■□□□□ 0.36
LIMS1-212ENST00000474038 KPNA6O60684 536 aa17.27■□□□□ 0.36
LIMS1-212ENST00000474038 MMP3P08254 477 aa17.27■□□□□ 0.36
LIMS1-212ENST00000474038 CYP2C18P33260 490 aa17.27■□□□□ 0.36
LIMS1-212ENST00000474038 MCTP2Q6DN12 878 aa17.27■□□□□ 0.36
LIMS1-212ENST00000474038 FAM177A1Q8N128 213 aaPredicted RBP17.27■□□□□ 0.36
LIMS1-212ENST00000474038 CRYGNQ8WXF5 182 aa17.27■□□□□ 0.36
LIMS1-212ENST00000474038 ZSCAN31Q96LW9 406 aaPredicted RBP17.27■□□□□ 0.36
LIMS1-212ENST00000474038 MTG1Q9BT17 334 aaPredicted RBP17.27■□□□□ 0.36
LIMS1-212ENST00000474038 MTMR10Q9NXD2 777 aa17.27■□□□□ 0.36
LIMS1-212ENST00000474038 JAK2O60674 1132 aa17.26■□□□□ 0.35
LIMS1-212ENST00000474038 CSF2RAP15509 400 aa17.26■□□□□ 0.35
LIMS1-212ENST00000474038 ARHGAP4P98171 946 aa17.26■□□□□ 0.35
LIMS1-212ENST00000474038 NPY5RQ15761 445 aa17.26■□□□□ 0.35
LIMS1-212ENST00000474038 PPTC7Q8NI37 304 aa17.26■□□□□ 0.35
LIMS1-212ENST00000474038 CYP2W1Q8TAV3 490 aa17.26■□□□□ 0.35
LIMS1-212ENST00000474038 SENP7Q9BQF6 1050 aa17.26■□□□□ 0.35
LIMS1-212ENST00000474038 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.26■□□□□ 0.35
LIMS1-212ENST00000474038 MXRA8Q9BRK3 442 aa17.26■□□□□ 0.35
LIMS1-212ENST00000474038 HIPK3Q9H422 1215 aa17.26■□□□□ 0.35
LIMS1-212ENST00000474038 JADE2Q9NQC1 790 aa17.26■□□□□ 0.35
LIMS1-212ENST00000474038 GJB4Q9NTQ9 266 aa17.26■□□□□ 0.35
LIMS1-212ENST00000474038 PCDHA4Q9UN74 947 aa17.26■□□□□ 0.35
LIMS1-212ENST00000474038 KCNJ14Q9UNX9 436 aa17.26■□□□□ 0.35
LIMS1-212ENST00000474038 ATP9AO75110 1047 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 ACRP10323 421 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 PPIGQ13427 754 aaKnown RBP eCLIP17.25■□□□□ 0.35
LIMS1-212ENST00000474038 MTMR1Q13613 665 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 NEDD9Q14511 834 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 HSDL1Q3SXM5 330 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 CEP55Q53EZ4 464 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 GALNT17Q6IS24 598 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 C16orf59Q7L2K0 433 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 CYFIP1Q7L576 1253 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 CCDC83Q8IWF9 413 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 BLIDQ8IZY5 108 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 TMEM199Q8N511 208 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 DAGLBQ8NCG7 672 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 WASF1Q92558 559 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 CDHR1Q96JP9 859 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 FAM161BQ96MY7 647 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 SPATA33Q96N06 139 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 ALG1Q9BT22 464 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 PHF20Q9BVI0 1012 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 SEZ6LQ9BYH1 1024 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 MLXIPQ9HAP2 919 aa17.25■□□□□ 0.35
LIMS1-212ENST00000474038 SH2B1Q9NRF2 756 aaPredicted RBP17.25■□□□□ 0.35
LIMS1-212ENST00000474038 TRMT13Q9NUP7 481 aaKnown RBP17.25■□□□□ 0.35
LIMS1-212ENST00000474038 MYH9P35579 1960 aaKnown RBP17.24■□□□□ 0.35
LIMS1-212ENST00000474038 M0R2N6 131 aa17.24■□□□□ 0.35
LIMS1-212ENST00000474038 ST18O60284 1047 aa17.24■□□□□ 0.35
LIMS1-212ENST00000474038 CYP3A4P08684 503 aa17.24■□□□□ 0.35
LIMS1-212ENST00000474038 HOXD8P13378 290 aaPredicted RBP17.24■□□□□ 0.35
LIMS1-212ENST00000474038 KCNA2P16389 499 aa17.24■□□□□ 0.35
LIMS1-212ENST00000474038 CCL23P55773 120 aa17.24■□□□□ 0.35
LIMS1-212ENST00000474038 DGKDQ16760 1214 aa17.24■□□□□ 0.35
LIMS1-212ENST00000474038 NBPF20Q3BBV1 942 aa17.24■□□□□ 0.35
LIMS1-212ENST00000474038 FAM47CQ5HY64 1035 aa17.24■□□□□ 0.35
LIMS1-212ENST00000474038 TMEM240Q5SV17 173 aa17.24■□□□□ 0.35
LIMS1-212ENST00000474038 METTL7BQ6UX53 244 aa17.24■□□□□ 0.35
LIMS1-212ENST00000474038 IL27Q8NEV9 243 aa17.24■□□□□ 0.35
LIMS1-212ENST00000474038 NOC4LQ9BVI4 516 aaKnown RBP17.24■□□□□ 0.35
LIMS1-212ENST00000474038 FAM86B1E9PN63 330 aa17.23■□□□□ 0.35
LIMS1-212ENST00000474038 MEIS1O00470 390 aa17.23■□□□□ 0.35
LIMS1-212ENST00000474038 MAFGO15525 162 aa17.23■□□□□ 0.35
LIMS1-212ENST00000474038 PPFIA4O75335 1185 aa17.23■□□□□ 0.35
LIMS1-212ENST00000474038 CD2BP2O95400 341 aaKnown RBP17.23■□□□□ 0.35
LIMS1-212ENST00000474038 FAM86B2P0C5J1 330 aa17.23■□□□□ 0.35
LIMS1-212ENST00000474038 ARP10275 920 aa17.23■□□□□ 0.35
LIMS1-212ENST00000474038 CYP2C9P11712 490 aa17.23■□□□□ 0.35
LIMS1-212ENST00000474038 XBP1P17861 261 aa17.23■□□□□ 0.35
LIMS1-212ENST00000474038 ZNF76P36508 570 aa17.23■□□□□ 0.35
LIMS1-212ENST00000474038 CHMP4BP1P59074 171 aa17.23■□□□□ 0.35
LIMS1-212ENST00000474038 SMAD3P84022 425 aaKnown RBP17.23■□□□□ 0.35
LIMS1-212ENST00000474038 ZNF697Q5TEC3 545 aa17.23■□□□□ 0.35
LIMS1-212ENST00000474038 FAM109BQ6ICB4 259 aaPredicted RBP17.23■□□□□ 0.35
LIMS1-212ENST00000474038 GIMAP8Q8ND71 665 aaPredicted RBP17.23■□□□□ 0.35
LIMS1-212ENST00000474038 KAT2BQ92831 832 aa17.23■□□□□ 0.35
LIMS1-212ENST00000474038 WNT8AQ9H1J5 351 aa17.23■□□□□ 0.35
LIMS1-212ENST00000474038 KCNH7Q9NS40 1196 aa17.23■□□□□ 0.35
LIMS1-212ENST00000474038 PKD2L1Q9P0L9 805 aa17.23■□□□□ 0.35
LIMS1-212ENST00000474038 TELO2Q9Y4R8 837 aa17.23■□□□□ 0.35
LIMS1-212ENST00000474038 IGLV3-22A0A075B6J6 115 aa17.22■□□□□ 0.35
LIMS1-212ENST00000474038 EDIL3O43854 480 aa17.22■□□□□ 0.35
LIMS1-212ENST00000474038 ZNF365Q70YC5 407 aa17.22■□□□□ 0.35
LIMS1-212ENST00000474038 NIPA1Q7RTP0 329 aa17.22■□□□□ 0.35
LIMS1-212ENST00000474038 GUCD1Q96NT3 240 aa17.22■□□□□ 0.35
LIMS1-212ENST00000474038 LLPHQ9BRT6 129 aaKnown RBP17.22■□□□□ 0.35
LIMS1-212ENST00000474038 NOP56O00567 594 aaKnown RBP17.21■□□□□ 0.35
LIMS1-212ENST00000474038 F2P00734 622 aa17.21■□□□□ 0.35
LIMS1-212ENST00000474038 ZNF286BP0CG31 522 aa17.21■□□□□ 0.35
LIMS1-212ENST00000474038 CIITAP33076 1130 aa17.21■□□□□ 0.35
LIMS1-212ENST00000474038 NFRKBQ6P4R8 1299 aa17.21■□□□□ 0.35
LIMS1-212ENST00000474038 PLA2G4DQ86XP0 818 aa17.21■□□□□ 0.35
LIMS1-212ENST00000474038 SCLYQ96I15 445 aa17.21■□□□□ 0.35
LIMS1-212ENST00000474038 GPR20Q99678 358 aa17.21■□□□□ 0.35
LIMS1-212ENST00000474038 AGO4Q9HCK5 861 aaKnown RBP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms