RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 VCANP13611 3396 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 FIBPO43427 364 aa19.19■□□□□ 0.66
USP40-212ENST00000473191 SELPP16109 830 aa19.19■□□□□ 0.66
USP40-212ENST00000473191 CDC27P30260 824 aa19.19■□□□□ 0.66
USP40-212ENST00000473191 RFC2P35250 354 aa19.19■□□□□ 0.66
USP40-212ENST00000473191 TSGA10IPQ3SY00 556 aa19.19■□□□□ 0.66
USP40-212ENST00000473191 RNF20Q5VTR2 975 aa19.19■□□□□ 0.66
USP40-212ENST00000473191 AFAP1L1Q8TED9 768 aa19.19■□□□□ 0.66
USP40-212ENST00000473191 PPM1EQ8WY54 764 aa19.19■□□□□ 0.66
USP40-212ENST00000473191 CCDC136Q96JN2 1154 aa19.19■□□□□ 0.66
USP40-212ENST00000473191 COL25A1Q9BXS0 654 aaPredicted RBP19.19■□□□□ 0.66
USP40-212ENST00000473191 H3BRB1 525 aa19.18■□□□□ 0.66
USP40-212ENST00000473191 RFXAPO00287 272 aa19.18■□□□□ 0.66
USP40-212ENST00000473191 ITGB5P18084 799 aa19.18■□□□□ 0.66
USP40-212ENST00000473191 RBL2Q08999 1139 aa19.18■□□□□ 0.66
USP40-212ENST00000473191 PTK7Q13308 1070 aa19.18■□□□□ 0.66
USP40-212ENST00000473191 GNPTABQ3T906 1256 aa19.18■□□□□ 0.66
USP40-212ENST00000473191 METTL7BQ6UX53 244 aa19.18■□□□□ 0.66
USP40-212ENST00000473191 TUT1Q9H6E5 874 aaKnown RBP19.18■□□□□ 0.66
USP40-212ENST00000473191 CERS4Q9HA82 394 aa19.18■□□□□ 0.66
USP40-212ENST00000473191 SLC28A3Q9HAS3 691 aa19.18■□□□□ 0.66
USP40-212ENST00000473191 PKD2L1Q9P0L9 805 aa19.18■□□□□ 0.66
USP40-212ENST00000473191 KLF18A0A0U1RQI7 1052 aa19.17■□□□□ 0.66
USP40-212ENST00000473191 EPOPA6NHQ4 379 aa19.17■□□□□ 0.66
USP40-212ENST00000473191 ADAMTS3O15072 1205 aa19.17■□□□□ 0.66
USP40-212ENST00000473191 TREHO43280 583 aa19.17■□□□□ 0.66
USP40-212ENST00000473191 STAM2O75886 525 aa19.17■□□□□ 0.66
USP40-212ENST00000473191 CA3P07451 260 aa19.17■□□□□ 0.66
USP40-212ENST00000473191 SMIM10L2AP0DMW4 78 aa19.17■□□□□ 0.66
USP40-212ENST00000473191 SMIM10L2BP0DMW5 78 aa19.17■□□□□ 0.66
USP40-212ENST00000473191 HOXC8P31273 242 aa19.17■□□□□ 0.66
USP40-212ENST00000473191 DEFB103AP81534 67 aa19.17■□□□□ 0.66
USP40-212ENST00000473191 RTN1Q16799 776 aa19.17■□□□□ 0.66
USP40-212ENST00000473191 UTP14CQ5TAP6 766 aaKnown RBP19.17■□□□□ 0.66
USP40-212ENST00000473191 PPP2R2DQ66LE6 453 aa19.17■□□□□ 0.66
USP40-212ENST00000473191 RNPEPQ9H4A4 650 aa19.17■□□□□ 0.66
USP40-212ENST00000473191 PCDHA6Q9UN73 950 aa19.17■□□□□ 0.66
USP40-212ENST00000473191 PCDHA8Q9Y5H6 950 aa19.17■□□□□ 0.66
USP40-212ENST00000473191 PCDHA11Q9Y5I1 949 aa19.17■□□□□ 0.66
USP40-212ENST00000473191 NOP56O00567 594 aaKnown RBP19.16■□□□□ 0.66
USP40-212ENST00000473191 ZBTB43O43298 467 aa19.16■□□□□ 0.66
USP40-212ENST00000473191 CXCL10P02778 98 aa19.16■□□□□ 0.66
USP40-212ENST00000473191 ACTN1P12814 892 aa19.16■□□□□ 0.66
USP40-212ENST00000473191 KCNA2P16389 499 aa19.16■□□□□ 0.66
USP40-212ENST00000473191 NEDD9Q14511 834 aa19.16■□□□□ 0.66
USP40-212ENST00000473191 CYP2W1Q8TAV3 490 aa19.16■□□□□ 0.66
USP40-212ENST00000473191 KCNB2Q92953 911 aa19.16■□□□□ 0.66
USP40-212ENST00000473191 SNX14Q9Y5W7 946 aa19.16■□□□□ 0.66
USP40-212ENST00000473191 UBIAD1Q9Y5Z9 338 aa19.16■□□□□ 0.66
USP40-212ENST00000473191 V9GY48 417 aaPredicted RBP19.16■□□□□ 0.66
USP40-212ENST00000473191 REV3LO60673 3130 aa19.16■□□□□ 0.66
USP40-212ENST00000473191 C17orf102A2RUQ5 167 aa19.15■□□□□ 0.66
USP40-212ENST00000473191 LCHNA4D1U4 455 aa19.15■□□□□ 0.66
USP40-212ENST00000473191 GOLGA8AA7E2F4 631 aa19.15■□□□□ 0.66
USP40-212ENST00000473191 GOLGA8BA8MQT2 603 aa19.15■□□□□ 0.66
USP40-212ENST00000473191 IGFBP4P22692 258 aa19.15■□□□□ 0.66
USP40-212ENST00000473191 ADD1P35611 737 aaKnown RBP19.15■□□□□ 0.66
USP40-212ENST00000473191 WDR5P61964 334 aaKnown RBP19.15■□□□□ 0.66
USP40-212ENST00000473191 APOBRQ0VD83 1088 aa19.15■□□□□ 0.66
USP40-212ENST00000473191 CCDC85BQ15834 202 aaPredicted RBP19.15■□□□□ 0.66
USP40-212ENST00000473191 SYNE3Q6ZMZ3 975 aa19.15■□□□□ 0.66
USP40-212ENST00000473191 SERINC5Q86VE9 423 aa19.15■□□□□ 0.66
USP40-212ENST00000473191 HERC6Q8IVU3 1022 aa19.15■□□□□ 0.66
USP40-212ENST00000473191 CCDC155Q8N6L0 562 aa19.15■□□□□ 0.66
USP40-212ENST00000473191 ATP6V0A1Q93050 837 aa19.15■□□□□ 0.66
USP40-212ENST00000473191 GAS2L1Q99501 681 aaPredicted RBP19.15■□□□□ 0.66
USP40-212ENST00000473191 SETD4Q9NVD3 440 aa19.15■□□□□ 0.66
USP40-212ENST00000473191 TMEM260Q9NX78 707 aa19.15■□□□□ 0.66
USP40-212ENST00000473191 STXBP3O00186 592 aa19.14■□□□□ 0.65
USP40-212ENST00000473191 PPFIA3O75145 1194 aa19.14■□□□□ 0.65
USP40-212ENST00000473191 HSPA4P34932 840 aa19.14■□□□□ 0.65
USP40-212ENST00000473191 THPOP40225 353 aa19.14■□□□□ 0.65
USP40-212ENST00000473191 Q6ZUG5 572 aa19.14■□□□□ 0.65
USP40-212ENST00000473191 JAKMIP1Q96N16 626 aaKnown RBP19.14■□□□□ 0.65
USP40-212ENST00000473191 SLC9A7Q96T83 725 aa19.14■□□□□ 0.65
USP40-212ENST00000473191 SENP7Q9BQF6 1050 aa19.14■□□□□ 0.65
USP40-212ENST00000473191 RBM28Q9NW13 759 aaKnown RBP19.14■□□□□ 0.65
USP40-212ENST00000473191 NAP1L2Q9ULW6 460 aaPredicted RBP19.14■□□□□ 0.65
USP40-212ENST00000473191 SPTBN5Q9NRC6 3674 aaKnown RBP19.13■□□□□ 0.65
USP40-212ENST00000473191 GSTTP1A0A1W2PQM5 241 aa19.13■□□□□ 0.65
USP40-212ENST00000473191 NAPAP54920 295 aa19.13■□□□□ 0.65
USP40-212ENST00000473191 KRT40Q6A162 431 aa19.13■□□□□ 0.65
USP40-212ENST00000473191 XRRA1Q6P2D8 792 aa19.13■□□□□ 0.65
USP40-212ENST00000473191 CNKSR3Q6P9H4 555 aa19.13■□□□□ 0.65
USP40-212ENST00000473191 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.13■□□□□ 0.65
USP40-212ENST00000473191 NLRX1Q86UT6 975 aa19.13■□□□□ 0.65
USP40-212ENST00000473191 PHOSPHO2Q8TCD6 241 aa19.13■□□□□ 0.65
USP40-212ENST00000473191 GPRASP2Q96D09 838 aa19.13■□□□□ 0.65
USP40-212ENST00000473191 USP26Q9BXU7 913 aa19.13■□□□□ 0.65
USP40-212ENST00000473191 SPDYE3A6NKU9 549 aa19.12■□□□□ 0.65
USP40-212ENST00000473191 BAIAP3O94812 1187 aa19.12■□□□□ 0.65
USP40-212ENST00000473191 CTSHP09668 335 aa19.12■□□□□ 0.65
USP40-212ENST00000473191 MARK3P27448 753 aa19.12■□□□□ 0.65
USP40-212ENST00000473191 TCF7P36402 384 aaPredicted RBP19.12■□□□□ 0.65
USP40-212ENST00000473191 ADAM17P78536 824 aa19.12■□□□□ 0.65
USP40-212ENST00000473191 TAP1Q03518 808 aa19.12■□□□□ 0.65
USP40-212ENST00000473191 MTMR1Q13613 665 aa19.12■□□□□ 0.65
USP40-212ENST00000473191 KRT32Q14532 448 aa19.12■□□□□ 0.65
USP40-212ENST00000473191 BRF1Q92994 677 aa19.12■□□□□ 0.65
USP40-212ENST00000473191 ZBTB10Q96DT7 871 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms