RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 A0A0U1RQG5 324 aaPredicted RBP13.27□□□□□ -0.29
CUX1-207ENST00000465461 RBAK-RBAKDNI3L0D1 243 aa13.27□□□□□ -0.29
CUX1-207ENST00000465461 ARVCFO00192 962 aa13.27□□□□□ -0.29
CUX1-207ENST00000465461 TDP2O95551 362 aa13.27□□□□□ -0.29
CUX1-207ENST00000465461 MMP1P03956 469 aa13.27□□□□□ -0.29
CUX1-207ENST00000465461 KRT2P35908 639 aa13.27□□□□□ -0.29
CUX1-207ENST00000465461 MCM2P49736 904 aa13.27□□□□□ -0.29
CUX1-207ENST00000465461 ITGB3BPQ13352 177 aaPredicted RBP13.27□□□□□ -0.29
CUX1-207ENST00000465461 TRIM29Q14134 588 aa13.27□□□□□ -0.29
CUX1-207ENST00000465461 SNX17Q15036 470 aa13.27□□□□□ -0.29
CUX1-207ENST00000465461 NONOQ15233 471 aaKnown RBP eCLIP13.27□□□□□ -0.29
CUX1-207ENST00000465461 BRDTQ58F21 947 aaPredicted RBP13.27□□□□□ -0.29
CUX1-207ENST00000465461 UTP14CQ5TAP6 766 aaKnown RBP13.27□□□□□ -0.29
CUX1-207ENST00000465461 MCTP2Q6DN12 878 aa13.27□□□□□ -0.29
CUX1-207ENST00000465461 METTL7BQ6UX53 244 aa13.27□□□□□ -0.29
CUX1-207ENST00000465461 SH3RF1Q7Z6J0 888 aa13.27□□□□□ -0.29
CUX1-207ENST00000465461 TEX2Q8IWB9 1127 aa13.27□□□□□ -0.29
CUX1-207ENST00000465461 KAT2BQ92831 832 aa13.27□□□□□ -0.29
CUX1-207ENST00000465461 EMID1Q96A84 441 aaPredicted RBP13.27□□□□□ -0.29
CUX1-207ENST00000465461 C8orf76Q96K31 380 aa13.27□□□□□ -0.29
CUX1-207ENST00000465461 GPR20Q99678 358 aa13.27□□□□□ -0.29
CUX1-207ENST00000465461 MTG1Q9BT17 334 aaPredicted RBP13.27□□□□□ -0.29
CUX1-207ENST00000465461 FOXD4L1Q9NU39 408 aa13.27□□□□□ -0.29
CUX1-207ENST00000465461 ELP1O95163 1332 aa13.27□□□□□ -0.29
CUX1-207ENST00000465461 CCDC194A0A1B0GVG4 234 aa13.26□□□□□ -0.29
CUX1-207ENST00000465461 NOP56O00567 594 aaKnown RBP13.26□□□□□ -0.29
CUX1-207ENST00000465461 CABYRO75952 493 aa13.26□□□□□ -0.29
CUX1-207ENST00000465461 GJB2P29033 226 aa13.26□□□□□ -0.29
CUX1-207ENST00000465461 CIITAP33076 1130 aa13.26□□□□□ -0.29
CUX1-207ENST00000465461 CDK7P50613 346 aa13.26□□□□□ -0.29
CUX1-207ENST00000465461 HMGN5P82970 282 aaKnown RBP13.26□□□□□ -0.29
CUX1-207ENST00000465461 DGKDQ16760 1214 aa13.26□□□□□ -0.29
CUX1-207ENST00000465461 LETM2Q2VYF4 491 aa13.26□□□□□ -0.29
CUX1-207ENST00000465461 NBPF20Q3BBV1 942 aa13.26□□□□□ -0.29
CUX1-207ENST00000465461 FAM47CQ5HY64 1035 aa13.26□□□□□ -0.29
CUX1-207ENST00000465461 KRT25Q7Z3Z0 450 aa13.26□□□□□ -0.29
CUX1-207ENST00000465461 TRIM50Q86XT4 487 aa13.26□□□□□ -0.29
CUX1-207ENST00000465461 DIS3L2Q8IYB7 885 aaKnown RBP13.26□□□□□ -0.29
CUX1-207ENST00000465461 TNFRSF25Q93038 417 aa13.26□□□□□ -0.29
CUX1-207ENST00000465461 CDHR1Q96JP9 859 aa13.26□□□□□ -0.29
CUX1-207ENST00000465461 SENP7Q9BQF6 1050 aa13.26□□□□□ -0.29
CUX1-207ENST00000465461 PRDM5Q9NQX1 630 aaPredicted RBP13.26□□□□□ -0.29
CUX1-207ENST00000465461 TNRC18O15417 2968 aaPredicted RBP13.25□□□□□ -0.29
CUX1-207ENST00000465461 GSTTP1A0A1W2PQM5 241 aa13.25□□□□□ -0.29
CUX1-207ENST00000465461 WNT7AO00755 349 aa13.25□□□□□ -0.29
CUX1-207ENST00000465461 MAFGO15525 162 aa13.25□□□□□ -0.29
CUX1-207ENST00000465461 PPFIA4O75335 1185 aa13.25□□□□□ -0.29
CUX1-207ENST00000465461 USP11P51784 963 aa13.25□□□□□ -0.29
CUX1-207ENST00000465461 FAAP100Q0VG06 881 aa13.25□□□□□ -0.29
CUX1-207ENST00000465461 C1orf53Q5VUE5 145 aa13.25□□□□□ -0.29
CUX1-207ENST00000465461 FAM177A1Q8N128 213 aaPredicted RBP13.25□□□□□ -0.29
CUX1-207ENST00000465461 LENG9Q96B70 501 aa13.25□□□□□ -0.29
CUX1-207ENST00000465461 SDF4Q9BRK5 362 aa13.25□□□□□ -0.29
CUX1-207ENST00000465461 ZNF577Q9BSK1 485 aa13.25□□□□□ -0.29
CUX1-207ENST00000465461 C16orf70Q9BSU1 422 aa13.25□□□□□ -0.29
CUX1-207ENST00000465461 TRPV6Q9H1D0 765 aa13.25□□□□□ -0.29
CUX1-207ENST00000465461 TRMT13Q9NUP7 481 aaKnown RBP13.25□□□□□ -0.29
CUX1-207ENST00000465461 TRIM43BA6NCK2 446 aa13.24□□□□□ -0.29
CUX1-207ENST00000465461 KIF28PB7ZC32 967 aa13.24□□□□□ -0.29
CUX1-207ENST00000465461 MSH4O15457 936 aa13.24□□□□□ -0.29
CUX1-207ENST00000465461 DHX15O43143 795 aaKnown RBP13.24□□□□□ -0.29
CUX1-207ENST00000465461 SLC37A4O43826 429 aa13.24□□□□□ -0.29
CUX1-207ENST00000465461 B4GALT4O60513 344 aa13.24□□□□□ -0.29
CUX1-207ENST00000465461 KPNA6O60684 536 aa13.24□□□□□ -0.29
CUX1-207ENST00000465461 LGALS2P05162 132 aa13.24□□□□□ -0.29
CUX1-207ENST00000465461 ITGB8P26012 769 aa13.24□□□□□ -0.29
CUX1-207ENST00000465461 TCF7P36402 384 aaPredicted RBP13.24□□□□□ -0.29
CUX1-207ENST00000465461 PSEN2P49810 448 aa13.24□□□□□ -0.29
CUX1-207ENST00000465461 MFSD10Q14728 455 aa13.24□□□□□ -0.29
CUX1-207ENST00000465461 KIAA0753Q2KHM9 967 aa13.24□□□□□ -0.29
CUX1-207ENST00000465461 NIPA1Q7RTP0 329 aa13.24□□□□□ -0.29
CUX1-207ENST00000465461 FAM126BQ8IXS8 530 aa13.24□□□□□ -0.29
CUX1-207ENST00000465461 SLC43A3Q8NBI5 491 aa13.24□□□□□ -0.29
CUX1-207ENST00000465461 GIMAP8Q8ND71 665 aaPredicted RBP13.24□□□□□ -0.29
CUX1-207ENST00000465461 TRIM43Q96BQ3 446 aaPredicted RBP13.24□□□□□ -0.29
CUX1-207ENST00000465461 BRMS1Q9HCU9 246 aa13.24□□□□□ -0.29
CUX1-207ENST00000465461 JPH1Q9HDC5 661 aaPredicted RBP13.24□□□□□ -0.29
CUX1-207ENST00000465461 PDLIM7Q9NR12 457 aa13.24□□□□□ -0.29
CUX1-207ENST00000465461 SLC9A2Q9UBY0 812 aa13.24□□□□□ -0.29
CUX1-207ENST00000465461 SMC3Q9UQE7 1217 aa13.24□□□□□ -0.29
CUX1-207ENST00000465461 NR2E3Q9Y5X4 410 aa13.24□□□□□ -0.29
CUX1-207ENST00000465461 NFASCO94856 1347 aa13.23□□□□□ -0.29
CUX1-207ENST00000465461 DCDC2CA8MYV0 355 aa13.23□□□□□ -0.29
CUX1-207ENST00000465461 IPO5O00410 1097 aaKnown RBP13.23□□□□□ -0.29
CUX1-207ENST00000465461 CCNT1O60563 726 aaKnown RBP13.23□□□□□ -0.29
CUX1-207ENST00000465461 CCNE2O96020 404 aa13.23□□□□□ -0.29
CUX1-207ENST00000465461 CLTBP09497 229 aa13.23□□□□□ -0.29
CUX1-207ENST00000465461 HOXD8P13378 290 aaPredicted RBP13.23□□□□□ -0.29
CUX1-207ENST00000465461 ATP2B1P20020 1258 aa13.23□□□□□ -0.29
CUX1-207ENST00000465461 ACTR2P61160 394 aa13.23□□□□□ -0.29
CUX1-207ENST00000465461 ZNF200P98182 395 aaPredicted RBP13.23□□□□□ -0.29
CUX1-207ENST00000465461 MDM2Q00987 491 aaPredicted RBP13.23□□□□□ -0.29
CUX1-207ENST00000465461 CUL4AQ13619 759 aa13.23□□□□□ -0.29
CUX1-207ENST00000465461 HIC1Q14526 733 aa13.23□□□□□ -0.29
CUX1-207ENST00000465461 ANKRD33Q7Z3H0 272 aa13.23□□□□□ -0.29
CUX1-207ENST00000465461 NEK8Q86SG6 692 aa13.23□□□□□ -0.29
CUX1-207ENST00000465461 IL27Q8NEV9 243 aa13.23□□□□□ -0.29
CUX1-207ENST00000465461 FBXO18Q8NFZ0 1043 aa13.23□□□□□ -0.29
CUX1-207ENST00000465461 SEPT1Q8WYJ6 367 aa13.23□□□□□ -0.29
CUX1-207ENST00000465461 PCYT2Q99447 389 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms