RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 BEX3Q00994 111 aa13.36□□□□□ -0.27
USP54-209ENST00000464635 BAATQ14032 418 aaPredicted RBP13.36□□□□□ -0.27
USP54-209ENST00000464635 SHHQ15465 462 aa13.36□□□□□ -0.27
USP54-209ENST00000464635 RESP18Q5W5W9 173 aa13.36□□□□□ -0.27
USP54-209ENST00000464635 SLC30A10Q6XR72 485 aa13.36□□□□□ -0.27
USP54-209ENST00000464635 EEPD1Q7L9B9 569 aa13.36□□□□□ -0.27
USP54-209ENST00000464635 FMR1NBQ8N0W7 255 aaPredicted RBP13.36□□□□□ -0.27
USP54-209ENST00000464635 CLEC4DQ8WXI8 215 aa13.36□□□□□ -0.27
USP54-209ENST00000464635 NUP62CLQ9H1M0 184 aa13.36□□□□□ -0.27
USP54-209ENST00000464635 RIC8AQ9NPQ8 531 aa13.36□□□□□ -0.27
USP54-209ENST00000464635 DACT1Q9NYF0 836 aa13.36□□□□□ -0.27
USP54-209ENST00000464635 PCDHA6Q9UN73 950 aa13.36□□□□□ -0.27
USP54-209ENST00000464635 HPSEQ9Y251 543 aa13.36□□□□□ -0.27
USP54-209ENST00000464635 PCDHA8Q9Y5H6 950 aa13.36□□□□□ -0.27
USP54-209ENST00000464635 COL6A3P12111 3177 aa13.35□□□□□ -0.27
USP54-209ENST00000464635 CCDC194A0A1B0GVG4 234 aa13.35□□□□□ -0.27
USP54-209ENST00000464635 MOXD2PA6NHM9 499 aa13.35□□□□□ -0.27
USP54-209ENST00000464635 ASB14A6NK59 587 aa13.35□□□□□ -0.27
USP54-209ENST00000464635 SMPD1P17405 629 aa13.35□□□□□ -0.27
USP54-209ENST00000464635 LIG1P18858 919 aa13.35□□□□□ -0.27
USP54-209ENST00000464635 PRPHP41219 470 aa13.35□□□□□ -0.27
USP54-209ENST00000464635 CLK2P49760 499 aaKnown RBP13.35□□□□□ -0.27
USP54-209ENST00000464635 EPHB4P54760 987 aa13.35□□□□□ -0.27
USP54-209ENST00000464635 ATP2C1P98194 919 aaPredicted RBP13.35□□□□□ -0.27
USP54-209ENST00000464635 TNFAIP2Q03169 654 aa13.35□□□□□ -0.27
USP54-209ENST00000464635 FAAP100Q0VG06 881 aa13.35□□□□□ -0.27
USP54-209ENST00000464635 UVSSAQ2YD98 709 aa13.35□□□□□ -0.27
USP54-209ENST00000464635 TTC38Q5R3I4 469 aa13.35□□□□□ -0.27
USP54-209ENST00000464635 TYW1BQ6NUM6 668 aa13.35□□□□□ -0.27
USP54-209ENST00000464635 HEATR3Q7Z4Q2 680 aa13.35□□□□□ -0.27
USP54-209ENST00000464635 DEFB123Q8N688 67 aa13.35□□□□□ -0.27
USP54-209ENST00000464635 UBA5Q9GZZ9 404 aa13.35□□□□□ -0.27
USP54-209ENST00000464635 GZF1Q9H116 711 aaPredicted RBP13.35□□□□□ -0.27
USP54-209ENST00000464635 USP25Q9UHP3 1055 aa13.35□□□□□ -0.27
USP54-209ENST00000464635 GNEQ9Y223 722 aaKnown RBP13.35□□□□□ -0.27
USP54-209ENST00000464635 hCG_1642624A0A1W2PR95 340 aa13.34□□□□□ -0.27
USP54-209ENST00000464635 KIAA0355O15063 1070 aa13.34□□□□□ -0.27
USP54-209ENST00000464635 KINO60870 393 aaKnown RBP13.34□□□□□ -0.27
USP54-209ENST00000464635 NR1I2O75469 434 aa13.34□□□□□ -0.27
USP54-209ENST00000464635 FOSP01100 380 aaPredicted RBP13.34□□□□□ -0.27
USP54-209ENST00000464635 ALDH5A1P51649 535 aaPredicted RBP13.34□□□□□ -0.27
USP54-209ENST00000464635 CEBPZQ03701 1054 aaKnown RBP13.34□□□□□ -0.27
USP54-209ENST00000464635 NONOQ15233 471 aaKnown RBP eCLIP13.34□□□□□ -0.27
USP54-209ENST00000464635 TAPT1Q6NXT6 567 aa13.34□□□□□ -0.27
USP54-209ENST00000464635 KANK3Q6NY19 840 aa13.34□□□□□ -0.27
USP54-209ENST00000464635 MOXD1Q6UVY6 613 aa13.34□□□□□ -0.27
USP54-209ENST00000464635 ANKRD33Q7Z3H0 272 aa13.34□□□□□ -0.27
USP54-209ENST00000464635 TLK2Q86UE8 772 aa13.34□□□□□ -0.27
USP54-209ENST00000464635 CCDC34Q96HJ3 373 aa13.34□□□□□ -0.27
USP54-209ENST00000464635 FUCA2Q9BTY2 467 aa13.34□□□□□ -0.27
USP54-209ENST00000464635 AMNQ9BXJ7 453 aa13.34□□□□□ -0.27
USP54-209ENST00000464635 FTOQ9C0B1 505 aaKnown RBP eCLIP13.34□□□□□ -0.27
USP54-209ENST00000464635 FBXO2Q9UK22 296 aaPredicted RBP13.34□□□□□ -0.27
USP54-209ENST00000464635 PCDHB6Q9Y5E3 794 aa13.34□□□□□ -0.27
USP54-209ENST00000464635 KIAA1217Q5T5P2 1943 aa13.34□□□□□ -0.27
USP54-209ENST00000464635 CCDC192P0DO97 292 aa13.33□□□□□ -0.28
USP54-209ENST00000464635 ADCY7P51828 1080 aa13.33□□□□□ -0.28
USP54-209ENST00000464635 NKX3-2P78367 333 aa13.33□□□□□ -0.28
USP54-209ENST00000464635 AP3B2Q13367 1082 aa13.33□□□□□ -0.28
USP54-209ENST00000464635 USH1GQ495M9 461 aa13.33□□□□□ -0.28
USP54-209ENST00000464635 GNASQ5JWF2 1037 aa13.33□□□□□ -0.28
USP54-209ENST00000464635 PPP4R3AQ6IN85 833 aa13.33□□□□□ -0.28
USP54-209ENST00000464635 GPR153Q6NV75 609 aa13.33□□□□□ -0.28
USP54-209ENST00000464635 REXO1Q8N1G1 1221 aaKnown RBP13.33□□□□□ -0.28
USP54-209ENST00000464635 FSIP1Q8NA03 581 aa13.33□□□□□ -0.28
USP54-209ENST00000464635 PCSK9Q8NBP7 692 aaKnown RBP13.33□□□□□ -0.28
USP54-209ENST00000464635 MORC4Q8TE76 937 aa13.33□□□□□ -0.28
USP54-209ENST00000464635 GPKOWQ92917 476 aaPredicted RBP eCLIP13.33□□□□□ -0.28
USP54-209ENST00000464635 CUL5Q93034 780 aa13.33□□□□□ -0.28
USP54-209ENST00000464635 GLT1D1Q96MS3 346 aa13.33□□□□□ -0.28
USP54-209ENST00000464635 TNMDQ9H2S6 317 aa13.33□□□□□ -0.28
USP54-209ENST00000464635 GRPEL1Q9HAV7 217 aa13.33□□□□□ -0.28
USP54-209ENST00000464635 SPC25Q9HBM1 224 aa13.33□□□□□ -0.28
USP54-209ENST00000464635 TMEM39AQ9NV64 488 aa13.33□□□□□ -0.28
USP54-209ENST00000464635 MTMR10Q9NXD2 777 aa13.33□□□□□ -0.28
USP54-209ENST00000464635 FAM13BQ9NYF5 915 aa13.33□□□□□ -0.28
USP54-209ENST00000464635 MAP3K20Q9NYL2 800 aaKnown RBP13.33□□□□□ -0.28
USP54-209ENST00000464635 TBX21Q9UL17 535 aa13.33□□□□□ -0.28
USP54-209ENST00000464635 GBF1Q92538 1859 aa13.32□□□□□ -0.28
USP54-209ENST00000464635 SYCE3A1L190 88 aa13.32□□□□□ -0.28
USP54-209ENST00000464635 PIK3CDO00329 1044 aa13.32□□□□□ -0.28
USP54-209ENST00000464635 ZNF202O95125 648 aa13.32□□□□□ -0.28
USP54-209ENST00000464635 RAG1P15918 1043 aa13.32□□□□□ -0.28
USP54-209ENST00000464635 GCFC2P16383 781 aaKnown RBP13.32□□□□□ -0.28
USP54-209ENST00000464635 DEKP35659 375 aaKnown RBP13.32□□□□□ -0.28
USP54-209ENST00000464635 LONP1P36776 959 aaKnown RBP13.32□□□□□ -0.28
USP54-209ENST00000464635 CDK7P50613 346 aa13.32□□□□□ -0.28
USP54-209ENST00000464635 USP11P51784 963 aa13.32□□□□□ -0.28
USP54-209ENST00000464635 RPS6P62753 249 aaKnown RBP13.32□□□□□ -0.28
USP54-209ENST00000464635 SEMA3FQ13275 785 aa13.32□□□□□ -0.28
USP54-209ENST00000464635 CDC37Q16543 378 aaPredicted RBP13.32□□□□□ -0.28
USP54-209ENST00000464635 FSCN1Q16658 493 aaKnown RBP13.32□□□□□ -0.28
USP54-209ENST00000464635 QRICH1Q2TAL8 776 aa13.32□□□□□ -0.28
USP54-209ENST00000464635 EARS2Q5JPH6 523 aaKnown RBP13.32□□□□□ -0.28
USP54-209ENST00000464635 CXCL17Q6UXB2 119 aa13.32□□□□□ -0.28
USP54-209ENST00000464635 PIK3AP1Q6ZUJ8 805 aa13.32□□□□□ -0.28
USP54-209ENST00000464635 NEK8Q86SG6 692 aa13.32□□□□□ -0.28
USP54-209ENST00000464635 GAS2L3Q86XJ1 694 aa13.32□□□□□ -0.28
USP54-209ENST00000464635 C4orf32Q8N8J7 132 aa13.32□□□□□ -0.28
USP54-209ENST00000464635 VTI1AQ96AJ9 217 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms