RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 PPP1R18Q6NYC8 613 aa16.02■□□□□ 0.16
USP4-206ENST00000461553 CYFIP1Q7L576 1253 aa16.02■□□□□ 0.16
USP4-206ENST00000461553 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.02■□□□□ 0.16
USP4-206ENST00000461553 DHX38Q92620 1227 aaKnown RBP16.02■□□□□ 0.16
USP4-206ENST00000461553 CDHR1Q96JP9 859 aa16.02■□□□□ 0.16
USP4-206ENST00000461553 SLC28A3Q9HAS3 691 aa16.02■□□□□ 0.16
USP4-206ENST00000461553 ZNF215Q9UL58 517 aaPredicted RBP16.02■□□□□ 0.16
USP4-206ENST00000461553 NAP1L2Q9ULW6 460 aaPredicted RBP16.02■□□□□ 0.16
USP4-206ENST00000461553 H3BRB1 525 aa16.01■□□□□ 0.15
USP4-206ENST00000461553 hCG_1984214I3L0E3 225 aa16.01■□□□□ 0.15
USP4-206ENST00000461553 CKBP12277 381 aa16.01■□□□□ 0.15
USP4-206ENST00000461553 KCNJ6P48051 423 aa16.01■□□□□ 0.15
USP4-206ENST00000461553 RABGGTBP53611 331 aa16.01■□□□□ 0.15
USP4-206ENST00000461553 RCAN1P53805 252 aa16.01■□□□□ 0.15
USP4-206ENST00000461553 NAPAP54920 295 aa16.01■□□□□ 0.15
USP4-206ENST00000461553 SP4Q02446 784 aa16.01■□□□□ 0.15
USP4-206ENST00000461553 WWC2Q6AWC2 1192 aa16.01■□□□□ 0.15
USP4-206ENST00000461553 ZNF713Q8N859 430 aaPredicted RBP16.01■□□□□ 0.15
USP4-206ENST00000461553 GIMAP8Q8ND71 665 aaPredicted RBP16.01■□□□□ 0.15
USP4-206ENST00000461553 GPRASP2Q96D09 838 aa16.01■□□□□ 0.15
USP4-206ENST00000461553 SENP7Q9BQF6 1050 aa16.01■□□□□ 0.15
USP4-206ENST00000461553 C16orf70Q9BSU1 422 aa16.01■□□□□ 0.15
USP4-206ENST00000461553 USP26Q9BXU7 913 aa16.01■□□□□ 0.15
USP4-206ENST00000461553 TUT1Q9H6E5 874 aaKnown RBP16.01■□□□□ 0.15
USP4-206ENST00000461553 YBX2Q9Y2T7 364 aaKnown RBP16.01■□□□□ 0.15
USP4-206ENST00000461553 PCDHA11Q9Y5I1 949 aa16.01■□□□□ 0.15
USP4-206ENST00000461553 SIP14410 1827 aa16.01■□□□□ 0.15
USP4-206ENST00000461553 C17orf102A2RUQ5 167 aa16■□□□□ 0.15
USP4-206ENST00000461553 REC8O95072 547 aa16■□□□□ 0.15
USP4-206ENST00000461553 JAKMIP1Q96N16 626 aaKnown RBP16■□□□□ 0.15
USP4-206ENST00000461553 GPR20Q99678 358 aa16■□□□□ 0.15
USP4-206ENST00000461553 PRDM12Q9H4Q4 367 aa16■□□□□ 0.15
USP4-206ENST00000461553 BRPF3Q9ULD4 1205 aa16■□□□□ 0.15
USP4-206ENST00000461553 TRANK1O15050 2925 aa15.99■□□□□ 0.15
USP4-206ENST00000461553 VCANP13611 3396 aa15.99■□□□□ 0.15
USP4-206ENST00000461553 SMIM10L2AP0DMW4 78 aa15.99■□□□□ 0.15
USP4-206ENST00000461553 SMIM10L2BP0DMW5 78 aa15.99■□□□□ 0.15
USP4-206ENST00000461553 HSPA4P34932 840 aa15.99■□□□□ 0.15
USP4-206ENST00000461553 METAP2P50579 478 aaKnown RBP eCLIP15.99■□□□□ 0.15
USP4-206ENST00000461553 ADCY7P51828 1080 aa15.99■□□□□ 0.15
USP4-206ENST00000461553 MTMR1Q13613 665 aa15.99■□□□□ 0.15
USP4-206ENST00000461553 CNKSR3Q6P9H4 555 aa15.99■□□□□ 0.15
USP4-206ENST00000461553 TRIM50Q86XT4 487 aa15.99■□□□□ 0.15
USP4-206ENST00000461553 TEX2Q8IWB9 1127 aa15.99■□□□□ 0.15
USP4-206ENST00000461553 PHOSPHO2Q8TCD6 241 aa15.99■□□□□ 0.15
USP4-206ENST00000461553 PCDHA6Q9UN73 950 aa15.99■□□□□ 0.15
USP4-206ENST00000461553 PCDHA8Q9Y5H6 950 aa15.99■□□□□ 0.15
USP4-206ENST00000461553 MYH9P35579 1960 aaKnown RBP15.98■□□□□ 0.15
USP4-206ENST00000461553 EMSYQ7Z589 1322 aa15.98■□□□□ 0.15
USP4-206ENST00000461553 DLL1O00548 723 aa15.98■□□□□ 0.15
USP4-206ENST00000461553 ZNF200P98182 395 aaPredicted RBP15.98■□□□□ 0.15
USP4-206ENST00000461553 UTP14CQ5TAP6 766 aaKnown RBP15.98■□□□□ 0.15
USP4-206ENST00000461553 BLOC1S2Q6QNY1 142 aa15.98■□□□□ 0.15
USP4-206ENST00000461553 SERINC5Q86VE9 423 aa15.98■□□□□ 0.15
USP4-206ENST00000461553 ATP6V0A1Q93050 837 aa15.98■□□□□ 0.15
USP4-206ENST00000461553 BCAS3Q9H6U6 928 aa15.98■□□□□ 0.15
USP4-206ENST00000461553 RIC8AQ9NPQ8 531 aa15.98■□□□□ 0.15
USP4-206ENST00000461553 NID2Q14112 1375 aa15.98■□□□□ 0.15
USP4-206ENST00000461553 WDR81Q562E7 1941 aa15.98■□□□□ 0.15
USP4-206ENST00000461553 LOXHD1Q8IVV2 1947 aa15.98■□□□□ 0.15
USP4-206ENST00000461553 CCDC196A0A1B0GTZ2 297 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 KIF28PB7ZC32 967 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 NBNO60934 754 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 CXCL10P02778 98 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 GNAT1P11488 350 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 MYOGP15173 224 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 KCNA2P16389 499 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 HOXC8P31273 242 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 THPOP40225 353 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 WDR5P61964 334 aaKnown RBP15.97■□□□□ 0.15
USP4-206ENST00000461553 FUT2Q10981 343 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 AP3B2Q13367 1082 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 TRIM71Q2Q1W2 868 aaKnown RBP15.97■□□□□ 0.15
USP4-206ENST00000461553 ZNF618Q5T7W0 954 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 Q6ZUG5 572 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 KCNB2Q92953 911 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 WNT8BQ93098 351 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 GLT8D2Q9H1C3 349 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 PKD2L1Q9P0L9 805 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 SNX14Q9Y5W7 946 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 UBIAD1Q9Y5Z9 338 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 NLRC5Q86WI3 1866 aa15.97■□□□□ 0.15
USP4-206ENST00000461553 STXBP3O00186 592 aa15.96■□□□□ 0.15
USP4-206ENST00000461553 EFCAB14O75071 495 aa15.96■□□□□ 0.15
USP4-206ENST00000461553 CAND2O75155 1236 aa15.96■□□□□ 0.15
USP4-206ENST00000461553 FOSP01100 380 aaPredicted RBP15.96■□□□□ 0.15
USP4-206ENST00000461553 CA3P07451 260 aa15.96■□□□□ 0.15
USP4-206ENST00000461553 CPA1P15085 419 aa15.96■□□□□ 0.15
USP4-206ENST00000461553 ITGB5P18084 799 aa15.96■□□□□ 0.15
USP4-206ENST00000461553 PSMA5P28066 241 aa15.96■□□□□ 0.15
USP4-206ENST00000461553 CDC27P30260 824 aa15.96■□□□□ 0.15
USP4-206ENST00000461553 TCF7P36402 384 aaPredicted RBP15.96■□□□□ 0.15
USP4-206ENST00000461553 APOBRQ0VD83 1088 aa15.96■□□□□ 0.15
USP4-206ENST00000461553 HIC1Q14526 733 aa15.96■□□□□ 0.15
USP4-206ENST00000461553 TYW1BQ6NUM6 668 aa15.96■□□□□ 0.15
USP4-206ENST00000461553 HERC6Q8IVU3 1022 aa15.96■□□□□ 0.15
USP4-206ENST00000461553 BRF1Q92994 677 aa15.96■□□□□ 0.15
USP4-206ENST00000461553 ANO3Q9BYT9 981 aa15.96■□□□□ 0.15
USP4-206ENST00000461553 JADE2Q9NQC1 790 aa15.96■□□□□ 0.15
USP4-206ENST00000461553 BARHL2Q9NY43 387 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms