RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 IQCF3P0C7M6 154 aa13.82□□□□□ -0.2
USP40-210ENST00000454354 METAP2P50579 478 aaKnown RBP eCLIP13.82□□□□□ -0.2
USP40-210ENST00000454354 CHMP4BP1P59074 171 aa13.82□□□□□ -0.2
USP40-210ENST00000454354 FGD1P98174 961 aa13.82□□□□□ -0.2
USP40-210ENST00000454354 APOBRQ0VD83 1088 aa13.82□□□□□ -0.2
USP40-210ENST00000454354 CYFIP1Q7L576 1253 aa13.82□□□□□ -0.2
USP40-210ENST00000454354 OTOP2Q7RTS6 562 aa13.82□□□□□ -0.2
USP40-210ENST00000454354 RETREG2Q8NC44 543 aa13.82□□□□□ -0.2
USP40-210ENST00000454354 BRF1Q92994 677 aa13.82□□□□□ -0.2
USP40-210ENST00000454354 CDHR1Q96JP9 859 aa13.82□□□□□ -0.2
USP40-210ENST00000454354 GPR20Q99678 358 aa13.82□□□□□ -0.2
USP40-210ENST00000454354 PBX4Q9BYU1 374 aa13.82□□□□□ -0.2
USP40-210ENST00000454354 RIC8AQ9NPQ8 531 aa13.82□□□□□ -0.2
USP40-210ENST00000454354 BARHL2Q9NY43 387 aa13.82□□□□□ -0.2
USP40-210ENST00000454354 PCDHA6Q9UN73 950 aa13.82□□□□□ -0.2
USP40-210ENST00000454354 PCDHA8Q9Y5H6 950 aa13.82□□□□□ -0.2
USP40-210ENST00000454354 UBIAD1Q9Y5Z9 338 aa13.82□□□□□ -0.2
USP40-210ENST00000454354 PRUNE2Q8WUY3 3088 aa13.82□□□□□ -0.2
USP40-210ENST00000454354 CCDC196A0A1B0GTZ2 297 aa13.81□□□□□ -0.2
USP40-210ENST00000454354 GRXCR1A8MXD5 290 aa13.81□□□□□ -0.2
USP40-210ENST00000454354 NOP56O00567 594 aaKnown RBP13.81□□□□□ -0.2
USP40-210ENST00000454354 KCNA2P16389 499 aa13.81□□□□□ -0.2
USP40-210ENST00000454354 ITGB5P18084 799 aa13.81□□□□□ -0.2
USP40-210ENST00000454354 PSMA5P28066 241 aa13.81□□□□□ -0.2
USP40-210ENST00000454354 NAPAP54920 295 aa13.81□□□□□ -0.2
USP40-210ENST00000454354 EVCP57679 992 aa13.81□□□□□ -0.2
USP40-210ENST00000454354 PTK7Q13308 1070 aa13.81□□□□□ -0.2
USP40-210ENST00000454354 TRIM71Q2Q1W2 868 aaKnown RBP13.81□□□□□ -0.2
USP40-210ENST00000454354 GIMAP8Q8ND71 665 aaPredicted RBP13.81□□□□□ -0.2
USP40-210ENST00000454354 TIFAQ96CG3 184 aa13.81□□□□□ -0.2
USP40-210ENST00000454354 CDX2Q99626 313 aaPredicted RBP13.81□□□□□ -0.2
USP40-210ENST00000454354 USP26Q9BXU7 913 aa13.81□□□□□ -0.2
USP40-210ENST00000454354 GLT8D2Q9H1C3 349 aa13.81□□□□□ -0.2
USP40-210ENST00000454354 EHMT1Q9H9B1 1298 aa13.81□□□□□ -0.2
USP40-210ENST00000454354 V9GY48 417 aaPredicted RBP13.81□□□□□ -0.2
USP40-210ENST00000454354 MYH9P35579 1960 aaKnown RBP13.81□□□□□ -0.2
USP40-210ENST00000454354 LOXHD1Q8IVV2 1947 aa13.8□□□□□ -0.2
USP40-210ENST00000454354 H3BRB1 525 aa13.8□□□□□ -0.2
USP40-210ENST00000454354 PARNO95453 639 aaKnown RBP13.8□□□□□ -0.2
USP40-210ENST00000454354 FOSP01100 380 aaPredicted RBP13.8□□□□□ -0.2
USP40-210ENST00000454354 SELPP16109 830 aa13.8□□□□□ -0.2
USP40-210ENST00000454354 ADD1P35611 737 aaKnown RBP13.8□□□□□ -0.2
USP40-210ENST00000454354 PBX2P40425 430 aa13.8□□□□□ -0.2
USP40-210ENST00000454354 CLK2P49760 499 aaKnown RBP13.8□□□□□ -0.2
USP40-210ENST00000454354 ADCY7P51828 1080 aa13.8□□□□□ -0.2
USP40-210ENST00000454354 HIC1Q14526 733 aa13.8□□□□□ -0.2
USP40-210ENST00000454354 RAB30Q15771 203 aa13.8□□□□□ -0.2
USP40-210ENST00000454354 PFKFB3Q16875 520 aaPredicted RBP13.8□□□□□ -0.2
USP40-210ENST00000454354 DEFB128Q7Z7B8 93 aa13.8□□□□□ -0.2
USP40-210ENST00000454354 SERINC5Q86VE9 423 aa13.8□□□□□ -0.2
USP40-210ENST00000454354 TUT1Q9H6E5 874 aaKnown RBP13.8□□□□□ -0.2
USP40-210ENST00000454354 JADE2Q9NQC1 790 aa13.8□□□□□ -0.2
USP40-210ENST00000454354 SLC4A7Q9Y6M7 1214 aa13.8□□□□□ -0.2
USP40-210ENST00000454354 ESYT2A0FGR8 921 aa13.79□□□□□ -0.2
USP40-210ENST00000454354 MAFGO15525 162 aa13.79□□□□□ -0.2
USP40-210ENST00000454354 ATP9AO75110 1047 aa13.79□□□□□ -0.2
USP40-210ENST00000454354 CXCL10P02778 98 aa13.79□□□□□ -0.2
USP40-210ENST00000454354 CKBP12277 381 aa13.79□□□□□ -0.2
USP40-210ENST00000454354 ACTN1P12814 892 aa13.79□□□□□ -0.2
USP40-210ENST00000454354 SCG2P13521 617 aa13.79□□□□□ -0.2
USP40-210ENST00000454354 AP3B2Q13367 1082 aa13.79□□□□□ -0.2
USP40-210ENST00000454354 MTMR1Q13613 665 aa13.79□□□□□ -0.2
USP40-210ENST00000454354 GPNMBQ14956 572 aa13.79□□□□□ -0.2
USP40-210ENST00000454354 TRAF7Q6Q0C0 670 aa13.79□□□□□ -0.2
USP40-210ENST00000454354 RUFY3Q7L099 469 aa13.79□□□□□ -0.2
USP40-210ENST00000454354 LRRC8DQ7L1W4 858 aa13.79□□□□□ -0.2
USP40-210ENST00000454354 WNT8BQ93098 351 aa13.79□□□□□ -0.2
USP40-210ENST00000454354 ANO3Q9BYT9 981 aa13.79□□□□□ -0.2
USP40-210ENST00000454354 TM6SF1Q9BZW5 370 aa13.79□□□□□ -0.2
USP40-210ENST00000454354 ZNF576Q9H609 170 aa13.79□□□□□ -0.2
USP40-210ENST00000454354 ZSWIM6Q9HCJ5 1215 aa13.79□□□□□ -0.2
USP40-210ENST00000454354 NAP1L2Q9ULW6 460 aaPredicted RBP13.79□□□□□ -0.2
USP40-210ENST00000454354 C17orf102A2RUQ5 167 aa13.78□□□□□ -0.2
USP40-210ENST00000454354 SMCO2A6NFE2 343 aa13.78□□□□□ -0.2
USP40-210ENST00000454354 ZBBXA8MT70 800 aa13.78□□□□□ -0.2
USP40-210ENST00000454354 PRPF3O43395 683 aaKnown RBP13.78□□□□□ -0.2
USP40-210ENST00000454354 BAIAP3O94812 1187 aa13.78□□□□□ -0.2
USP40-210ENST00000454354 SMIM10L2AP0DMW4 78 aa13.78□□□□□ -0.2
USP40-210ENST00000454354 SMIM10L2BP0DMW5 78 aa13.78□□□□□ -0.2
USP40-210ENST00000454354 SREBF1P36956 1147 aa13.78□□□□□ -0.2
USP40-210ENST00000454354 ZNF200P98182 395 aaPredicted RBP13.78□□□□□ -0.2
USP40-210ENST00000454354 TOB2Q14106 344 aaPredicted RBP13.78□□□□□ -0.2
USP40-210ENST00000454354 NTRK3Q16288 839 aa13.78□□□□□ -0.2
USP40-210ENST00000454354 PKN1Q16512 942 aa13.78□□□□□ -0.2
USP40-210ENST00000454354 MYLIPQ8WY64 445 aa13.78□□□□□ -0.2
USP40-210ENST00000454354 SLC9A7Q96T83 725 aa13.78□□□□□ -0.2
USP40-210ENST00000454354 MXRA8Q9BRK3 442 aa13.78□□□□□ -0.2
USP40-210ENST00000454354 MSRAQ9UJ68 235 aa13.78□□□□□ -0.2
USP40-210ENST00000454354 ZNF215Q9UL58 517 aaPredicted RBP13.78□□□□□ -0.2
USP40-210ENST00000454354 TELO2Q9Y4R8 837 aa13.78□□□□□ -0.2
USP40-210ENST00000454354 REV3LO60673 3130 aa13.77□□□□□ -0.21
USP40-210ENST00000454354 NBNO60934 754 aa13.77□□□□□ -0.21
USP40-210ENST00000454354 NFASCO94856 1347 aa13.77□□□□□ -0.21
USP40-210ENST00000454354 ATP2A2P16615 1042 aaKnown RBP13.77□□□□□ -0.21
USP40-210ENST00000454354 IFNAR1P17181 557 aa13.77□□□□□ -0.21
USP40-210ENST00000454354 COL4A4P53420 1690 aaPredicted RBP13.77□□□□□ -0.21
USP40-210ENST00000454354 GRIN2CQ14957 1233 aa13.77□□□□□ -0.21
USP40-210ENST00000454354 EMSYQ7Z589 1322 aa13.77□□□□□ -0.21
USP40-210ENST00000454354 TRIM50Q86XT4 487 aa13.77□□□□□ -0.21
USP40-210ENST00000454354 PHOSPHO2Q8TCD6 241 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms