RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 DGKDQ16760 1214 aa16.35■□□□□ 0.21
COL3A1-203ENST00000450867 KRT40Q6A162 431 aa16.35■□□□□ 0.21
COL3A1-203ENST00000450867 TBCKQ8TEA7 893 aa16.35■□□□□ 0.21
COL3A1-203ENST00000450867 DPF3Q92784 378 aa16.35■□□□□ 0.21
COL3A1-203ENST00000450867 SPATA33Q96N06 139 aa16.35■□□□□ 0.21
COL3A1-203ENST00000450867 MLXIPQ9HAP2 919 aa16.35■□□□□ 0.21
COL3A1-203ENST00000450867 MROH7Q68CQ1 1323 aa16.35■□□□□ 0.21
COL3A1-203ENST00000450867 F2P00734 622 aa16.34■□□□□ 0.21
COL3A1-203ENST00000450867 ARP10275 920 aa16.34■□□□□ 0.21
COL3A1-203ENST00000450867 CUL4AQ13619 759 aa16.34■□□□□ 0.21
COL3A1-203ENST00000450867 NONOQ15233 471 aaKnown RBP eCLIP16.34■□□□□ 0.21
COL3A1-203ENST00000450867 TRIM60Q495X7 471 aa16.34■□□□□ 0.21
COL3A1-203ENST00000450867 CYFIP1Q7L576 1253 aa16.34■□□□□ 0.21
COL3A1-203ENST00000450867 FBXO18Q8NFZ0 1043 aa16.34■□□□□ 0.21
COL3A1-203ENST00000450867 OXER1Q8TDS5 423 aa16.34■□□□□ 0.21
COL3A1-203ENST00000450867 KAT2BQ92831 832 aa16.34■□□□□ 0.21
COL3A1-203ENST00000450867 GPR20Q99678 358 aa16.34■□□□□ 0.21
COL3A1-203ENST00000450867 AGO4Q9HCK5 861 aaKnown RBP16.34■□□□□ 0.21
COL3A1-203ENST00000450867 HAS3O00219 553 aa16.33■□□□□ 0.2
COL3A1-203ENST00000450867 MYL3P08590 195 aa16.33■□□□□ 0.2
COL3A1-203ENST00000450867 KRT2P35908 639 aa16.33■□□□□ 0.2
COL3A1-203ENST00000450867 ZNF76P36508 570 aa16.33■□□□□ 0.2
COL3A1-203ENST00000450867 TLE2Q04725 743 aa16.33■□□□□ 0.2
COL3A1-203ENST00000450867 PTPN11Q06124 597 aaPredicted RBP16.33■□□□□ 0.2
COL3A1-203ENST00000450867 ITGB3BPQ13352 177 aaPredicted RBP16.33■□□□□ 0.2
COL3A1-203ENST00000450867 ITGA7Q13683 1181 aa16.33■□□□□ 0.2
COL3A1-203ENST00000450867 Q4G0T1 1027 aa16.33■□□□□ 0.2
COL3A1-203ENST00000450867 PRPF38BQ5VTL8 546 aaKnown RBP16.33■□□□□ 0.2
COL3A1-203ENST00000450867 SESTD1Q86VW0 696 aa16.33■□□□□ 0.2
COL3A1-203ENST00000450867 PLA2G4DQ86XP0 818 aa16.33■□□□□ 0.2
COL3A1-203ENST00000450867 BRMS1Q9HCU9 246 aa16.33■□□□□ 0.2
COL3A1-203ENST00000450867 CCDC194A0A1B0GVG4 234 aa16.32■□□□□ 0.2
COL3A1-203ENST00000450867 DHX15O43143 795 aaKnown RBP16.32■□□□□ 0.2
COL3A1-203ENST00000450867 CD4P01730 458 aa16.32■□□□□ 0.2
COL3A1-203ENST00000450867 NR5A1Q13285 461 aa16.32■□□□□ 0.2
COL3A1-203ENST00000450867 TRIM29Q14134 588 aa16.32■□□□□ 0.2
COL3A1-203ENST00000450867 NFRKBQ6P4R8 1299 aa16.32■□□□□ 0.2
COL3A1-203ENST00000450867 FAM126BQ8IXS8 530 aa16.32■□□□□ 0.2
COL3A1-203ENST00000450867 DIS3L2Q8IYB7 885 aaKnown RBP16.32■□□□□ 0.2
COL3A1-203ENST00000450867 C7orf61Q8IZ16 206 aa16.32■□□□□ 0.2
COL3A1-203ENST00000450867 SNX21Q969T3 373 aa16.32■□□□□ 0.2
COL3A1-203ENST00000450867 C8orf76Q96K31 380 aa16.32■□□□□ 0.2
COL3A1-203ENST00000450867 C16orf70Q9BSU1 422 aa16.32■□□□□ 0.2
COL3A1-203ENST00000450867 PDLIM7Q9NR12 457 aa16.32■□□□□ 0.2
COL3A1-203ENST00000450867 ATP11BQ9Y2G3 1177 aa16.32■□□□□ 0.2
COL3A1-203ENST00000450867 KIF3AQ9Y496 699 aa16.32■□□□□ 0.2
COL3A1-203ENST00000450867 TANC1Q9C0D5 1861 aa16.31■□□□□ 0.2
COL3A1-203ENST00000450867 H0YGN5 161 aa16.31■□□□□ 0.2
COL3A1-203ENST00000450867 IPO5O00410 1097 aaKnown RBP16.31■□□□□ 0.2
COL3A1-203ENST00000450867 LGALS2P05162 132 aa16.31■□□□□ 0.2
COL3A1-203ENST00000450867 GCFC2P16383 781 aaKnown RBP16.31■□□□□ 0.2
COL3A1-203ENST00000450867 PSMC6P62333 389 aa16.31■□□□□ 0.2
COL3A1-203ENST00000450867 INF2Q27J81 1249 aa16.31■□□□□ 0.2
COL3A1-203ENST00000450867 EARS2Q5JPH6 523 aaKnown RBP16.31■□□□□ 0.2
COL3A1-203ENST00000450867 PPP4R3AQ6IN85 833 aa16.31■□□□□ 0.2
COL3A1-203ENST00000450867 KATNAL1Q9BW62 490 aa16.31■□□□□ 0.2
COL3A1-203ENST00000450867 JPH1Q9HDC5 661 aaPredicted RBP16.31■□□□□ 0.2
COL3A1-203ENST00000450867 TBC1D22BQ9NU19 505 aa16.31■□□□□ 0.2
COL3A1-203ENST00000450867 SLC9A2Q9UBY0 812 aa16.31■□□□□ 0.2
COL3A1-203ENST00000450867 TELO2Q9Y4R8 837 aa16.31■□□□□ 0.2
COL3A1-203ENST00000450867 EMSYQ7Z589 1322 aa16.3■□□□□ 0.2
COL3A1-203ENST00000450867 RANBP2P49792 3224 aaKnown RBP16.3■□□□□ 0.2
COL3A1-203ENST00000450867 GSTTP1A0A1W2PQM5 241 aa16.3■□□□□ 0.2
COL3A1-203ENST00000450867 DCDC2CA8MYV0 355 aa16.3■□□□□ 0.2
COL3A1-203ENST00000450867 BTBD18B2RXH4 712 aa16.3■□□□□ 0.2
COL3A1-203ENST00000450867 NOP56O00567 594 aaKnown RBP16.3■□□□□ 0.2
COL3A1-203ENST00000450867 KIAA0355O15063 1070 aa16.3■□□□□ 0.2
COL3A1-203ENST00000450867 ATG7O95352 703 aa16.3■□□□□ 0.2
COL3A1-203ENST00000450867 FAAP100Q0VG06 881 aa16.3■□□□□ 0.2
COL3A1-203ENST00000450867 NBPF20Q3BBV1 942 aa16.3■□□□□ 0.2
COL3A1-203ENST00000450867 PRR16Q569H4 304 aa16.3■□□□□ 0.2
COL3A1-203ENST00000450867 NEK8Q86SG6 692 aa16.3■□□□□ 0.2
COL3A1-203ENST00000450867 FAM184AQ8NB25 1140 aa16.3■□□□□ 0.2
COL3A1-203ENST00000450867 SLC5A5Q92911 643 aa16.3■□□□□ 0.2
COL3A1-203ENST00000450867 VTI1AQ96AJ9 217 aa16.3■□□□□ 0.2
COL3A1-203ENST00000450867 NAP1L4Q99733 375 aaKnown RBP16.3■□□□□ 0.2
COL3A1-203ENST00000450867 SDF4Q9BRK5 362 aa16.3■□□□□ 0.2
COL3A1-203ENST00000450867 FOXP1Q9H334 677 aaPredicted RBP16.3■□□□□ 0.2
COL3A1-203ENST00000450867 TBX21Q9UL17 535 aa16.3■□□□□ 0.2
COL3A1-203ENST00000450867 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.3■□□□□ 0.2
COL3A1-203ENST00000450867 MSH4O15457 936 aa16.29■□□□□ 0.2
COL3A1-203ENST00000450867 SORBS3O60504 671 aa16.29■□□□□ 0.2
COL3A1-203ENST00000450867 PQBP1O60828 265 aaKnown RBP16.29■□□□□ 0.2
COL3A1-203ENST00000450867 LGR5O75473 907 aa16.29■□□□□ 0.2
COL3A1-203ENST00000450867 TDP2O95551 362 aa16.29■□□□□ 0.2
COL3A1-203ENST00000450867 CLTBP09497 229 aa16.29■□□□□ 0.2
COL3A1-203ENST00000450867 ZNF286BP0CG31 522 aa16.29■□□□□ 0.2
COL3A1-203ENST00000450867 HOXC8P31273 242 aa16.29■□□□□ 0.2
COL3A1-203ENST00000450867 TCF7P36402 384 aaPredicted RBP16.29■□□□□ 0.2
COL3A1-203ENST00000450867 PSEN2P49810 448 aa16.29■□□□□ 0.2
COL3A1-203ENST00000450867 SAFBQ15424 915 aaKnown RBP eCLIP16.29■□□□□ 0.2
COL3A1-203ENST00000450867 PIK3AP1Q6ZUJ8 805 aa16.29■□□□□ 0.2
COL3A1-203ENST00000450867 SEPT1Q8WYJ6 367 aa16.29■□□□□ 0.2
COL3A1-203ENST00000450867 RIT2Q99578 217 aa16.29■□□□□ 0.2
COL3A1-203ENST00000450867 ZNF577Q9BSK1 485 aa16.29■□□□□ 0.2
COL3A1-203ENST00000450867 IGKV6D-21A0A0A0MT36 114 aa16.28■□□□□ 0.2
COL3A1-203ENST00000450867 FAM205CA6NFA0 338 aa16.28■□□□□ 0.2
COL3A1-203ENST00000450867 H3BRB1 525 aa16.28■□□□□ 0.2
COL3A1-203ENST00000450867 K7ELQ4 463 aaPredicted RBP16.28■□□□□ 0.2
COL3A1-203ENST00000450867 TLR3O15455 904 aaKnown RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms