RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 GPR20Q99678 358 aa28.24■■■□□ 2.11
RAPGEF1-206ENST00000438647 MXRA8Q9BRK3 442 aa28.24■■■□□ 2.11
RAPGEF1-206ENST00000438647 ALG1Q9BT22 464 aa28.24■■■□□ 2.11
RAPGEF1-206ENST00000438647 TMEM260Q9NX78 707 aa28.24■■■□□ 2.11
RAPGEF1-206ENST00000438647 SOX1O00570 391 aaPredicted RBP28.23■■■□□ 2.11
RAPGEF1-206ENST00000438647 CYP2C9P11712 490 aa28.23■■■□□ 2.11
RAPGEF1-206ENST00000438647 CSF2RAP15509 400 aa28.23■■■□□ 2.11
RAPGEF1-206ENST00000438647 KCNA2P16389 499 aa28.23■■■□□ 2.11
RAPGEF1-206ENST00000438647 AK2P54819 239 aa28.23■■■□□ 2.11
RAPGEF1-206ENST00000438647 PTGISQ16647 500 aa28.23■■■□□ 2.11
RAPGEF1-206ENST00000438647 C9orf50Q5SZB4 431 aa28.23■■■□□ 2.11
RAPGEF1-206ENST00000438647 PPP1R13LQ8WUF5 828 aa28.23■■■□□ 2.11
RAPGEF1-206ENST00000438647 C16orf70Q9BSU1 422 aa28.23■■■□□ 2.11
RAPGEF1-206ENST00000438647 BCAS3Q9H6U6 928 aa28.23■■■□□ 2.11
RAPGEF1-206ENST00000438647 VPS54Q9P1Q0 977 aa28.23■■■□□ 2.11
RAPGEF1-206ENST00000438647 GTF2IRD1Q9UHL9 959 aa28.23■■■□□ 2.11
RAPGEF1-206ENST00000438647 TPCN1Q9ULQ1 816 aa28.23■■■□□ 2.11
RAPGEF1-206ENST00000438647 SZT2Q5T011 3432 aa28.22■■■□□ 2.11
RAPGEF1-206ENST00000438647 PFKFB2O60825 505 aa28.22■■■□□ 2.11
RAPGEF1-206ENST00000438647 LGALS2P05162 132 aa28.22■■■□□ 2.11
RAPGEF1-206ENST00000438647 ZNF76P36508 570 aa28.22■■■□□ 2.11
RAPGEF1-206ENST00000438647 EPHB4P54760 987 aa28.22■■■□□ 2.11
RAPGEF1-206ENST00000438647 ARHGAP4P98171 946 aa28.22■■■□□ 2.11
RAPGEF1-206ENST00000438647 SCRN1Q12765 414 aa28.22■■■□□ 2.11
RAPGEF1-206ENST00000438647 FAM177A1Q8N128 213 aaPredicted RBP28.22■■■□□ 2.11
RAPGEF1-206ENST00000438647 H3BRB1 525 aa28.21■■■□□ 2.11
RAPGEF1-206ENST00000438647 PITPNM1O00562 1244 aa28.21■■■□□ 2.11
RAPGEF1-206ENST00000438647 ATP9AO75110 1047 aa28.21■■■□□ 2.11
RAPGEF1-206ENST00000438647 NLRP5P59047 1200 aa28.21■■■□□ 2.11
RAPGEF1-206ENST00000438647 SP4Q02446 784 aa28.21■■■□□ 2.11
RAPGEF1-206ENST00000438647 BFSP2Q13515 415 aa28.21■■■□□ 2.11
RAPGEF1-206ENST00000438647 C8orf34Q49A92 452 aa28.21■■■□□ 2.11
RAPGEF1-206ENST00000438647 GPR153Q6NV75 609 aa28.21■■■□□ 2.11
RAPGEF1-206ENST00000438647 PSRC1Q6PGN9 363 aaPredicted RBP28.21■■■□□ 2.11
RAPGEF1-206ENST00000438647 CCDC155Q8N6L0 562 aa28.21■■■□□ 2.11
RAPGEF1-206ENST00000438647 RNPC3Q96LT9 517 aaKnown RBP28.21■■■□□ 2.11
RAPGEF1-206ENST00000438647 TUT1Q9H6E5 874 aaKnown RBP28.21■■■□□ 2.11
RAPGEF1-206ENST00000438647 KCNH7Q9NS40 1196 aa28.21■■■□□ 2.11
RAPGEF1-206ENST00000438647 HDAC6Q9UBN7 1215 aa28.21■■■□□ 2.11
RAPGEF1-206ENST00000438647 ZNF215Q9UL58 517 aaPredicted RBP28.21■■■□□ 2.11
RAPGEF1-206ENST00000438647 UMODL1Q5DID0 1318 aa28.2■■■□□ 2.11
RAPGEF1-206ENST00000438647 NEK4P51957 841 aa28.2■■■□□ 2.1
RAPGEF1-206ENST00000438647 CCL23P55773 120 aa28.2■■■□□ 2.1
RAPGEF1-206ENST00000438647 GDF6Q6KF10 455 aaPredicted RBP28.2■■■□□ 2.1
RAPGEF1-206ENST00000438647 NIPA1Q7RTP0 329 aa28.2■■■□□ 2.1
RAPGEF1-206ENST00000438647 LRCH3Q96II8 777 aa28.2■■■□□ 2.1
RAPGEF1-206ENST00000438647 IL23AQ9NPF7 189 aa28.2■■■□□ 2.1
RAPGEF1-206ENST00000438647 CYP3A4P08684 503 aa28.19■■■□□ 2.1
RAPGEF1-206ENST00000438647 RETREG2Q8NC44 543 aa28.19■■■□□ 2.1
RAPGEF1-206ENST00000438647 CAGE1Q8TC20 777 aa28.19■■■□□ 2.1
RAPGEF1-206ENST00000438647 SDF4Q9BRK5 362 aa28.19■■■□□ 2.1
RAPGEF1-206ENST00000438647 WNT8AQ9H1J5 351 aa28.19■■■□□ 2.1
RAPGEF1-206ENST00000438647 PKD2L1Q9P0L9 805 aa28.19■■■□□ 2.1
RAPGEF1-206ENST00000438647 MEIS1O00470 390 aa28.18■■■□□ 2.1
RAPGEF1-206ENST00000438647 RPUSD2Q8IZ73 545 aaKnown RBP28.18■■■□□ 2.1
RAPGEF1-206ENST00000438647 CYP2W1Q8TAV3 490 aa28.18■■■□□ 2.1
RAPGEF1-206ENST00000438647 SEPT1Q8WYJ6 367 aa28.18■■■□□ 2.1
RAPGEF1-206ENST00000438647 BUD13Q9BRD0 619 aaKnown RBP eCLIP28.18■■■□□ 2.11e-6■■■■□ 21.4
RAPGEF1-206ENST00000438647 JPH1Q9HDC5 661 aaPredicted RBP28.18■■■□□ 2.1
RAPGEF1-206ENST00000438647 LAMA2P24043 3122 aaKnown RBP28.18■■■□□ 2.1
RAPGEF1-206ENST00000438647 STK36Q9NRP7 1315 aa28.18■■■□□ 2.1
RAPGEF1-206ENST00000438647 GALNT17Q6IS24 598 aa28.17■■■□□ 2.1
RAPGEF1-206ENST00000438647 CRYGNQ8WXF5 182 aa28.17■■■□□ 2.1
RAPGEF1-206ENST00000438647 C22orf23Q9BZE7 217 aa28.17■■■□□ 2.1
RAPGEF1-206ENST00000438647 DOCK5Q9H7D0 1870 aa28.17■■■□□ 2.1
RAPGEF1-206ENST00000438647 NFASCO94856 1347 aa28.17■■■□□ 2.1
RAPGEF1-206ENST00000438647 PFKMP08237 780 aa28.16■■■□□ 2.1
RAPGEF1-206ENST00000438647 XBP1P17861 261 aa28.16■■■□□ 2.1
RAPGEF1-206ENST00000438647 TCF7P36402 384 aaPredicted RBP28.16■■■□□ 2.1
RAPGEF1-206ENST00000438647 TMEM240Q5SV17 173 aa28.16■■■□□ 2.1
RAPGEF1-206ENST00000438647 UTP14CQ5TAP6 766 aaKnown RBP28.16■■■□□ 2.1
RAPGEF1-206ENST00000438647 MTIF3Q9H2K0 278 aaKnown RBP28.16■■■□□ 2.1
RAPGEF1-206ENST00000438647 AGO4Q9HCK5 861 aaKnown RBP28.16■■■□□ 2.1
RAPGEF1-206ENST00000438647 SLC9A2Q9UBY0 812 aa28.16■■■□□ 2.1
RAPGEF1-206ENST00000438647 PCDHA4Q9UN74 947 aa28.16■■■□□ 2.1
RAPGEF1-206ENST00000438647 ARP10275 920 aa28.15■■■□□ 2.1
RAPGEF1-206ENST00000438647 ACRP10323 421 aa28.15■■■□□ 2.1
RAPGEF1-206ENST00000438647 RFC2P35250 354 aa28.15■■■□□ 2.1
RAPGEF1-206ENST00000438647 SETQ01105 290 aaPredicted RBP28.15■■■□□ 2.1
RAPGEF1-206ENST00000438647 C16orf59Q7L2K0 433 aa28.15■■■□□ 2.1
RAPGEF1-206ENST00000438647 PLA2G4DQ86XP0 818 aa28.15■■■□□ 2.1
RAPGEF1-206ENST00000438647 RASGRP4Q8TDF6 673 aa28.15■■■□□ 2.1
RAPGEF1-206ENST00000438647 AFAP1L1Q8TED9 768 aa28.15■■■□□ 2.1
RAPGEF1-206ENST00000438647 SCLYQ96I15 445 aa28.15■■■□□ 2.1
RAPGEF1-206ENST00000438647 C17orf102A2RUQ5 167 aa28.14■■■□□ 2.1
RAPGEF1-206ENST00000438647 FAM86B1E9PN63 330 aa28.14■■■□□ 2.1
RAPGEF1-206ENST00000438647 FAM86B2P0C5J1 330 aa28.14■■■□□ 2.1
RAPGEF1-206ENST00000438647 GNAT1P11488 350 aa28.14■■■□□ 2.1
RAPGEF1-206ENST00000438647 PTK7Q13308 1070 aa28.14■■■□□ 2.1
RAPGEF1-206ENST00000438647 ZNF365Q70YC5 407 aa28.14■■■□□ 2.1
RAPGEF1-206ENST00000438647 TRIM50Q86XT4 487 aa28.14■■■□□ 2.1
RAPGEF1-206ENST00000438647 CTAGE1Q96RT6 745 aa28.14■■■□□ 2.1
RAPGEF1-206ENST00000438647 GSTTP1A0A1W2PQM5 241 aa28.13■■■□□ 2.09
RAPGEF1-206ENST00000438647 ADAMTS3O15072 1205 aa28.13■■■□□ 2.09
RAPGEF1-206ENST00000438647 FGBP02675 491 aa28.13■■■□□ 2.09
RAPGEF1-206ENST00000438647 IQCF3P0C7M6 154 aa28.13■■■□□ 2.09
RAPGEF1-206ENST00000438647 SMIM10L2AP0DMW4 78 aa28.13■■■□□ 2.09
RAPGEF1-206ENST00000438647 SMIM10L2BP0DMW5 78 aa28.13■■■□□ 2.09
RAPGEF1-206ENST00000438647 SMAD3P84022 425 aaKnown RBP28.13■■■□□ 2.09
RAPGEF1-206ENST00000438647 RBL2Q08999 1139 aa28.13■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms